PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_9
Name: RBENTGA3
Description: rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs

#Associated genes: 6
#Associated GO terms: 159

Biological Process
Molecular Function
Cellular Component

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Molecular Function (back to top)

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GO	Description	#Associated genes	gma	ptr	ppe
GO:0005488	binding	4 (66.67%)	2	1	1
GO:0003824	catalytic activity	2 (33.33%)	2	0	0
GO:1901363	heterocyclic compound binding	2 (33.33%)	2	0	0
GO:0043167	ion binding	2 (33.33%)	2	0	0
GO:0097159	organic cyclic compound binding	2 (33.33%)	2	0	0
GO:0016491	oxidoreductase activity	2 (33.33%)	2	0	0
GO:0005515	protein binding	2 (33.33%)	0	1	1
GO:0004499	N,N-dimethylaniline monooxygenase activity	1 (16.67%)	1	0	0
GO:0050661	NADP binding	1 (16.67%)	1	0	0
GO:0043168	anion binding	1 (16.67%)	1	0	0
GO:0043169	cation binding	1 (16.67%)	1	0	0
GO:0005261	cation channel activity	1 (16.67%)	0	0	1
GO:0008324	cation transmembrane transporter activity	1 (16.67%)	0	0	1
GO:0015267	channel activity	1 (16.67%)	0	0	1
GO:0050662	coenzyme binding	1 (16.67%)	1	0	0
GO:0048037	cofactor binding	1 (16.67%)	1	0	0
GO:0050660	flavin adenine dinucleotide binding	1 (16.67%)	1	0	0
GO:0022836	gated channel activity	1 (16.67%)	0	0	1
GO:0022890	inorganic cation transmembrane transporter activity	1 (16.67%)	0	0	1
GO:0005216	ion channel activity	1 (16.67%)	0	0	1
GO:0022839	ion gated channel activity	1 (16.67%)	0	0	1
GO:0015075	ion transmembrane transporter activity	1 (16.67%)	0	0	1
GO:0046872	metal ion binding	1 (16.67%)	1	0	0
GO:0046873	metal ion transmembrane transporter activity	1 (16.67%)	0	0	1
GO:0004497	monooxygenase activity	1 (16.67%)	1	0	0
GO:0015077	monovalent inorganic cation transmembrane transporter activity	1 (16.67%)	0	0	1
GO:0003676	nucleic acid binding	1 (16.67%)	1	0	0
GO:1901265	nucleoside phosphate binding	1 (16.67%)	1	0	0
GO:0000166	nucleotide binding	1 (16.67%)	1	0	0
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1 (16.67%)	1	0	0
GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1 (16.67%)	1	0	0
GO:0022803	passive transmembrane transporter activity	1 (16.67%)	0	0	1
GO:0005267	potassium channel activity	1 (16.67%)	0	0	1
GO:0015079	potassium ion transmembrane transporter activity	1 (16.67%)	0	0	1
GO:0036094	small molecule binding	1 (16.67%)	1	0	0
GO:0022838	substrate-specific channel activity	1 (16.67%)	0	0	1
GO:0022891	substrate-specific transmembrane transporter activity	1 (16.67%)	0	0	1
GO:0022892	substrate-specific transporter activity	1 (16.67%)	0	0	1
GO:0022857	transmembrane transporter activity	1 (16.67%)	0	0	1
GO:0005215	transporter activity	1 (16.67%)	0	0	1
GO:0022843	voltage-gated cation channel activity	1 (16.67%)	0	0	1
GO:0022832	voltage-gated channel activity	1 (16.67%)	0	0	1
GO:0005244	voltage-gated ion channel activity	1 (16.67%)	0	0	1
GO:0005249	voltage-gated potassium channel activity	1 (16.67%)	0	0	1

Biological Process (back to top)

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GO	Description	#Associated genes	gma	ppe
GO:0008152	metabolic process	3 (50.00%)	3	0
GO:0044699	single-organism process	3 (50.00%)	2	1
GO:0065007	biological regulation	2 (33.33%)	2	0
GO:0009058	biosynthetic process	2 (33.33%)	2	0
GO:0044249	cellular biosynthetic process	2 (33.33%)	2	0
GO:0044237	cellular metabolic process	2 (33.33%)	2	0
GO:0009987	cellular process	2 (33.33%)	2	0
GO:0055114	oxidation-reduction process	2 (33.33%)	2	0
GO:0044710	single-organism metabolic process	2 (33.33%)	2	0
GO:0032774	RNA biosynthetic process	1 (16.67%)	1	0
GO:0016070	RNA metabolic process	1 (16.67%)	1	0
GO:0019438	aromatic compound biosynthetic process	1 (16.67%)	1	0
GO:0009851	auxin biosynthetic process	1 (16.67%)	1	0
GO:0009850	auxin metabolic process	1 (16.67%)	1	0
GO:0006812	cation transport	1 (16.67%)	0	1
GO:0006725	cellular aromatic compound metabolic process	1 (16.67%)	1	0
GO:0022607	cellular component assembly	1 (16.67%)	0	1
GO:0044085	cellular component biogenesis	1 (16.67%)	0	1
GO:0016043	cellular component organization	1 (16.67%)	0	1
GO:0071840	cellular component organization or biogenesis	1 (16.67%)	0	1
GO:0034645	cellular macromolecule biosynthetic process	1 (16.67%)	1	0
GO:0044260	cellular macromolecule metabolic process	1 (16.67%)	1	0
GO:0044271	cellular nitrogen compound biosynthetic process	1 (16.67%)	1	0
GO:0034641	cellular nitrogen compound metabolic process	1 (16.67%)	1	0
GO:0051234	establishment of localization	1 (16.67%)	0	1
GO:0010467	gene expression	1 (16.67%)	1	0
GO:0018130	heterocycle biosynthetic process	1 (16.67%)	1	0
GO:0046483	heterocycle metabolic process	1 (16.67%)	1	0
GO:0042446	hormone biosynthetic process	1 (16.67%)	1	0
GO:0042445	hormone metabolic process	1 (16.67%)	1	0
GO:0006811	ion transport	1 (16.67%)	0	1
GO:0051179	localization	1 (16.67%)	0	1
GO:0065003	macromolecular complex assembly	1 (16.67%)	0	1
GO:0043933	macromolecular complex subunit organization	1 (16.67%)	0	1
GO:0009059	macromolecule biosynthetic process	1 (16.67%)	1	0
GO:0043170	macromolecule metabolic process	1 (16.67%)	1	0
GO:0030001	metal ion transport	1 (16.67%)	0	1
GO:0015672	monovalent inorganic cation transport	1 (16.67%)	0	1
GO:0006807	nitrogen compound metabolic process	1 (16.67%)	1	0
GO:0090304	nucleic acid metabolic process	1 (16.67%)	1	0
GO:0034654	nucleobase-containing compound biosynthetic process	1 (16.67%)	1	0
GO:0006139	nucleobase-containing compound metabolic process	1 (16.67%)	1	0
GO:1901362	organic cyclic compound biosynthetic process	1 (16.67%)	1	0
GO:1901360	organic cyclic compound metabolic process	1 (16.67%)	1	0
GO:1901576	organic substance biosynthetic process	1 (16.67%)	1	0
GO:0071704	organic substance metabolic process	1 (16.67%)	1	0
GO:0006813	potassium ion transport	1 (16.67%)	0	1
GO:0044238	primary metabolic process	1 (16.67%)	1	0
GO:0006461	protein complex assembly	1 (16.67%)	0	1
GO:0070271	protein complex biogenesis	1 (16.67%)	0	1
GO:0071822	protein complex subunit organization	1 (16.67%)	0	1
GO:0051260	protein homooligomerization	1 (16.67%)	0	1
GO:0051259	protein oligomerization	1 (16.67%)	0	1
GO:2001141	regulation of RNA biosynthetic process	1 (16.67%)	1	0
GO:0051252	regulation of RNA metabolic process	1 (16.67%)	1	0
GO:0050789	regulation of biological process	1 (16.67%)	1	0
GO:0065008	regulation of biological quality	1 (16.67%)	1	0
GO:0009889	regulation of biosynthetic process	1 (16.67%)	1	0
GO:0031326	regulation of cellular biosynthetic process	1 (16.67%)	1	0
GO:2000112	regulation of cellular macromolecule biosynthetic process	1 (16.67%)	1	0
GO:0031323	regulation of cellular metabolic process	1 (16.67%)	1	0
GO:0050794	regulation of cellular process	1 (16.67%)	1	0
GO:0010468	regulation of gene expression	1 (16.67%)	1	0
GO:0010817	regulation of hormone levels	1 (16.67%)	1	0
GO:0010556	regulation of macromolecule biosynthetic process	1 (16.67%)	1	0
GO:0060255	regulation of macromolecule metabolic process	1 (16.67%)	1	0
GO:0019222	regulation of metabolic process	1 (16.67%)	1	0
GO:0051171	regulation of nitrogen compound metabolic process	1 (16.67%)	1	0
GO:0019219	regulation of nucleobase-containing compound metabolic process	1 (16.67%)	1	0
GO:0080090	regulation of primary metabolic process	1 (16.67%)	1	0
GO:0006355	regulation of transcription, DNA-dependent	1 (16.67%)	1	0
GO:0044765	single-organism transport	1 (16.67%)	0	1
GO:0006351	transcription, DNA-templated	1 (16.67%)	1	0
GO:0006810	transport	1 (16.67%)	0	1

Cellular Component (back to top)

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GO	Description	#Associated genes	ptr	ppe
GO:0005623	cell	2 (33.33%)	1	1
GO:0044464	cell part	2 (33.33%)	1	1
GO:0016020	membrane	2 (33.33%)	1	1
GO:0034703	cation channel complex	1 (16.67%)	0	1
GO:0071944	cell periphery	1 (16.67%)	0	1
GO:0009507	chloroplast	1 (16.67%)	1	0
GO:0044434	chloroplast part	1 (16.67%)	1	0
GO:0009534	chloroplast thylakoid	1 (16.67%)	1	0
GO:0009535	chloroplast thylakoid membrane	1 (16.67%)	1	0
GO:0005737	cytoplasm	1 (16.67%)	1	0
GO:0044444	cytoplasmic part	1 (16.67%)	1	0
GO:0016021	integral to membrane	1 (16.67%)	0	1
GO:0005887	integral to plasma membrane	1 (16.67%)	0	1
GO:0005622	intracellular	1 (16.67%)	1	0
GO:0043231	intracellular membrane-bounded organelle	1 (16.67%)	1	0
GO:0043229	intracellular organelle	1 (16.67%)	1	0
GO:0044446	intracellular organelle part	1 (16.67%)	1	0
GO:0044424	intracellular part	1 (16.67%)	1	0
GO:0031224	intrinsic to membrane	1 (16.67%)	0	1
GO:0031226	intrinsic to plasma membrane	1 (16.67%)	0	1
GO:0034702	ion channel complex	1 (16.67%)	0	1
GO:0032991	macromolecular complex	1 (16.67%)	0	1
GO:0044425	membrane part	1 (16.67%)	0	1
GO:0043227	membrane-bounded organelle	1 (16.67%)	1	0
GO:0043226	organelle	1 (16.67%)	1	0
GO:0044422	organelle part	1 (16.67%)	1	0
GO:0031984	organelle subcompartment	1 (16.67%)	1	0
GO:0034357	photosynthetic membrane	1 (16.67%)	1	0
GO:0005886	plasma membrane	1 (16.67%)	0	1
GO:0044459	plasma membrane part	1 (16.67%)	0	1
GO:0009536	plastid	1 (16.67%)	1	0
GO:0044435	plastid part	1 (16.67%)	1	0
GO:0031976	plastid thylakoid	1 (16.67%)	1	0
GO:0055035	plastid thylakoid membrane	1 (16.67%)	1	0
GO:0034705	potassium channel complex	1 (16.67%)	0	1
GO:0043234	protein complex	1 (16.67%)	0	1
GO:0009579	thylakoid	1 (16.67%)	1	0
GO:0042651	thylakoid membrane	1 (16.67%)	1	0
GO:0044436	thylakoid part	1 (16.67%)	1	0
GO:1902495	transmembrane transporter complex	1 (16.67%)	0	1
GO:0008076	voltage-gated potassium channel complex	1 (16.67%)	0	1