Gene Ontology terms associated with a binding site

Binding site
Motif_676
Name
RNFG1OS
Description
RNFG1 binding site; Box I; RNFG1 is one of two Rice Nuclear Factors required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); Box I is found at -3 to +8 of RTBV promoter; See also RNFG2OS
#Associated genes
4
#Associated GO terms
129
 
Biological Process
Molecular Function
Cellular Component






Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0009056catabolic process3 (75.00%)0002000001
GO:0044248cellular catabolic process3 (75.00%)0002000001
GO:0044237cellular metabolic process3 (75.00%)0002000001
GO:0009987cellular process3 (75.00%)0002000001
GO:0008152metabolic process3 (75.00%)0002000001
GO:1901575organic substance catabolic process3 (75.00%)0002000001
GO:0071704organic substance metabolic process3 (75.00%)0002000001
GO:0044238primary metabolic process3 (75.00%)0002000001
GO:0044265cellular macromolecule catabolic process2 (50.00%)0002000000
GO:0044260cellular macromolecule metabolic process2 (50.00%)0002000000
GO:0044257cellular protein catabolic process2 (50.00%)0002000000
GO:0044267cellular protein metabolic process2 (50.00%)0002000000
GO:0009057macromolecule catabolic process2 (50.00%)0002000000
GO:0043170macromolecule metabolic process2 (50.00%)0002000000
GO:0043632modification-dependent macromolecule catabolic process2 (50.00%)0002000000
GO:0019941modification-dependent protein catabolic process2 (50.00%)0002000000
GO:0030163protein catabolic process2 (50.00%)0002000000
GO:0019538protein metabolic process2 (50.00%)0002000000
GO:0006508proteolysis2 (50.00%)0002000000
GO:0051603proteolysis involved in cellular protein catabolic process2 (50.00%)0002000000
GO:0050896response to stimulus2 (50.00%)0000100001
GO:0044699single-organism process2 (50.00%)0000100001
GO:0006511ubiquitin-dependent protein catabolic process2 (50.00%)0002000000
GO:0006559L-phenylalanine catabolic process1 (25.00%)0000000001
GO:0006558L-phenylalanine metabolic process1 (25.00%)0000000001
GO:1901606alpha-amino acid catabolic process1 (25.00%)0000000001
GO:1901605alpha-amino acid metabolic process1 (25.00%)0000000001
GO:0048856anatomical structure development1 (25.00%)0000100000
GO:0009074aromatic amino acid family catabolic process1 (25.00%)0000000001
GO:0009072aromatic amino acid family metabolic process1 (25.00%)0000000001
GO:0019439aromatic compound catabolic process1 (25.00%)0000000001
GO:0009734auxin mediated signaling pathway1 (25.00%)0000000001
GO:0065007biological regulation1 (25.00%)0000000001
GO:0009058biosynthetic process1 (25.00%)0000000001
GO:0046395carboxylic acid catabolic process1 (25.00%)0000000001
GO:0019752carboxylic acid metabolic process1 (25.00%)0000000001
GO:0007154cell communication1 (25.00%)0000000001
GO:0009063cellular amino acid catabolic process1 (25.00%)0000000001
GO:0006520cellular amino acid metabolic process1 (25.00%)0000000001
GO:0006725cellular aromatic compound metabolic process1 (25.00%)0000000001
GO:0071365cellular response to auxin stimulus1 (25.00%)0000000001
GO:0070887cellular response to chemical stimulus1 (25.00%)0000000001
GO:0071495cellular response to endogenous stimulus1 (25.00%)0000000001
GO:0032870cellular response to hormone stimulus1 (25.00%)0000000001
GO:0071310cellular response to organic substance1 (25.00%)0000000001
GO:0051716cellular response to stimulus1 (25.00%)0000000001
GO:0032502developmental process1 (25.00%)0000100000
GO:0003006developmental process involved in reproduction1 (25.00%)0000100000
GO:1902222erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process1 (25.00%)0000000001
GO:1902221erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process1 (25.00%)0000000001
GO:0009755hormone-mediated signaling pathway1 (25.00%)0000000001
GO:0007275multicellular organismal development1 (25.00%)0000100000
GO:0032501multicellular organismal process1 (25.00%)0000100000
GO:0006807nitrogen compound metabolic process1 (25.00%)0000000001
GO:0016054organic acid catabolic process1 (25.00%)0000000001
GO:0006082organic acid metabolic process1 (25.00%)0000000001
GO:1901361organic cyclic compound catabolic process1 (25.00%)0000000001
GO:1901360organic cyclic compound metabolic process1 (25.00%)0000000001
GO:1901565organonitrogen compound catabolic process1 (25.00%)0000000001
GO:1901564organonitrogen compound metabolic process1 (25.00%)0000000001
GO:0043436oxoacid metabolic process1 (25.00%)0000000001
GO:0009640photomorphogenesis1 (25.00%)0000100000
GO:0009791post-embryonic development1 (25.00%)0000100000
GO:0050789regulation of biological process1 (25.00%)0000000001
GO:0050794regulation of cellular process1 (25.00%)0000000001
GO:0000003reproduction1 (25.00%)0000100000
GO:0022414reproductive process1 (25.00%)0000100000
GO:0048608reproductive structure development1 (25.00%)0000100000
GO:0061458reproductive system development1 (25.00%)0000100000
GO:0009628response to abiotic stimulus1 (25.00%)0000100000
GO:0009646response to absence of light1 (25.00%)0000100000
GO:0009733response to auxin1 (25.00%)0000000001
GO:0042221response to chemical1 (25.00%)0000000001
GO:0009719response to endogenous stimulus1 (25.00%)0000000001
GO:0009725response to hormone1 (25.00%)0000000001
GO:0009642response to light intensity1 (25.00%)0000100000
GO:0009416response to light stimulus1 (25.00%)0000100000
GO:0010033response to organic substance1 (25.00%)0000000001
GO:0009314response to radiation1 (25.00%)0000100000
GO:0009639response to red or far red light1 (25.00%)0000100000
GO:0007165signal transduction1 (25.00%)0000000001
GO:0023052signaling1 (25.00%)0000000001
GO:0044700single organism signaling1 (25.00%)0000000001
GO:0044707single-multicellular organism process1 (25.00%)0000100000
GO:0044712single-organism catabolic process1 (25.00%)0000000001
GO:0044763single-organism cellular process1 (25.00%)0000000001
GO:0044767single-organism developmental process1 (25.00%)0000100000
GO:0044710single-organism metabolic process1 (25.00%)0000000001
GO:0009647skotomorphogenesis1 (25.00%)0000100000
GO:0044282small molecule catabolic process1 (25.00%)0000000001
GO:0044281small molecule metabolic process1 (25.00%)0000000001
GO:0048731system development1 (25.00%)0000100000
GO:0010228vegetative to reproductive phase transition of meristem1 (25.00%)0000100000

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding4 (100.00%)0002100001
GO:0003824catalytic activity3 (75.00%)0002000001
GO:0043169cation binding2 (50.00%)0002000000
GO:0016787hydrolase activity2 (50.00%)0002000000
GO:0016788hydrolase activity, acting on ester bonds2 (50.00%)0002000000
GO:0043167ion binding2 (50.00%)0002000000
GO:0046872metal ion binding2 (50.00%)0002000000
GO:0016790thiolester hydrolase activity2 (50.00%)0002000000
GO:0046914transition metal ion binding2 (50.00%)0002000000
GO:0004221ubiquitin thiolesterase activity2 (50.00%)0002000000
GO:0008270zinc ion binding2 (50.00%)0002000000
GO:0003680AT DNA binding1 (25.00%)0000100000
GO:0003677DNA binding1 (25.00%)0000100000
GO:0016880acid-ammonia (or amide) ligase activity1 (25.00%)0000000001
GO:0016211ammonia ligase activity1 (25.00%)0000000001
GO:0016841ammonia-lyase activity1 (25.00%)0000000001
GO:0005516calmodulin binding1 (25.00%)0000000001
GO:0016840carbon-nitrogen lyase activity1 (25.00%)0000000001
GO:1901363heterocyclic compound binding1 (25.00%)0000100000
GO:0016874ligase activity1 (25.00%)0000000001
GO:0016879ligase activity, forming carbon-nitrogen bonds1 (25.00%)0000000001
GO:0016829lyase activity1 (25.00%)0000000001
GO:0003676nucleic acid binding1 (25.00%)0000100000
GO:0097159organic cyclic compound binding1 (25.00%)0000100000
GO:0005515protein binding1 (25.00%)0000000001
GO:0043565sequence-specific DNA binding1 (25.00%)0000100000

Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell2 (50.00%)0000100001
GO:0044464cell part2 (50.00%)0000100001
GO:0005622intracellular2 (50.00%)0000100001
GO:0044424intracellular part2 (50.00%)0000100001
GO:0005737cytoplasm1 (25.00%)0000000001
GO:0043231intracellular membrane-bounded organelle1 (25.00%)0000100000
GO:0043229intracellular organelle1 (25.00%)0000100000
GO:0043227membrane-bounded organelle1 (25.00%)0000100000
GO:0005634nucleus1 (25.00%)0000100000
GO:0043226organelle1 (25.00%)0000100000