Gene Ontology terms associated with a binding site
- Binding site
- Motif_676
- Name
- RNFG1OS
- Description
- RNFG1 binding site; Box I; RNFG1 is one of two Rice Nuclear Factors required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); Box I is found at -3 to +8 of RTBV promoter; See also RNFG2OS
- #Associated genes
- 4
- #Associated GO terms
- 129
Biological Process
Molecular Function
Cellular Component
Biological Process (back to top)
Click table-header(s) to enable sortingGO | Description | #Associated genes | ath | bra | cme | egr | gma | ptr | ppe | sly | stu | vvi |
---|---|---|---|---|---|---|---|---|---|---|---|---|
GO:0009056 | catabolic process | 3 (75.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0044248 | cellular catabolic process | 3 (75.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0044237 | cellular metabolic process | 3 (75.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009987 | cellular process | 3 (75.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0008152 | metabolic process | 3 (75.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:1901575 | organic substance catabolic process | 3 (75.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0071704 | organic substance metabolic process | 3 (75.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0044238 | primary metabolic process | 3 (75.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0044265 | cellular macromolecule catabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0044260 | cellular macromolecule metabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0044257 | cellular protein catabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0044267 | cellular protein metabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0009057 | macromolecule catabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0043170 | macromolecule metabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0043632 | modification-dependent macromolecule catabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0019941 | modification-dependent protein catabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0030163 | protein catabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0019538 | protein metabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0006508 | proteolysis | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0051603 | proteolysis involved in cellular protein catabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0050896 | response to stimulus | 2 (50.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
GO:0044699 | single-organism process | 2 (50.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
GO:0006511 | ubiquitin-dependent protein catabolic process | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0006559 | L-phenylalanine catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0006558 | L-phenylalanine metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:1901606 | alpha-amino acid catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:1901605 | alpha-amino acid metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0048856 | anatomical structure development | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0009074 | aromatic amino acid family catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009072 | aromatic amino acid family metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0019439 | aromatic compound catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009734 | auxin mediated signaling pathway | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0065007 | biological regulation | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009058 | biosynthetic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0046395 | carboxylic acid catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0019752 | carboxylic acid metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0007154 | cell communication | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009063 | cellular amino acid catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0006520 | cellular amino acid metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0006725 | cellular aromatic compound metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0071365 | cellular response to auxin stimulus | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0070887 | cellular response to chemical stimulus | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0071495 | cellular response to endogenous stimulus | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0032870 | cellular response to hormone stimulus | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0071310 | cellular response to organic substance | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0051716 | cellular response to stimulus | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0032502 | developmental process | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0003006 | developmental process involved in reproduction | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:1902222 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:1902221 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009755 | hormone-mediated signaling pathway | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0007275 | multicellular organismal development | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0032501 | multicellular organismal process | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0006807 | nitrogen compound metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0016054 | organic acid catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0006082 | organic acid metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:1901361 | organic cyclic compound catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:1901360 | organic cyclic compound metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:1901565 | organonitrogen compound catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:1901564 | organonitrogen compound metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0043436 | oxoacid metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009640 | photomorphogenesis | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0009791 | post-embryonic development | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0050789 | regulation of biological process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0050794 | regulation of cellular process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0000003 | reproduction | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0022414 | reproductive process | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0048608 | reproductive structure development | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0061458 | reproductive system development | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0009628 | response to abiotic stimulus | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0009646 | response to absence of light | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0009733 | response to auxin | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0042221 | response to chemical | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009719 | response to endogenous stimulus | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009725 | response to hormone | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009642 | response to light intensity | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0009416 | response to light stimulus | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0010033 | response to organic substance | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009314 | response to radiation | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0009639 | response to red or far red light | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0007165 | signal transduction | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0023052 | signaling | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0044700 | single organism signaling | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0044707 | single-multicellular organism process | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0044712 | single-organism catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0044763 | single-organism cellular process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0044767 | single-organism developmental process | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0044710 | single-organism metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0009647 | skotomorphogenesis | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0044282 | small molecule catabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0044281 | small molecule metabolic process | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0048731 | system development | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0010228 | vegetative to reproductive phase transition of meristem | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Molecular Function (back to top)
Click table-header(s) to enable sortingGO | Description | #Associated genes | ath | bra | cme | egr | gma | ptr | ppe | sly | stu | vvi |
---|---|---|---|---|---|---|---|---|---|---|---|---|
GO:0005488 | binding | 4 (100.00%) | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 1 |
GO:0003824 | catalytic activity | 3 (75.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0043169 | cation binding | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0016787 | hydrolase activity | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0016788 | hydrolase activity, acting on ester bonds | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0043167 | ion binding | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0046872 | metal ion binding | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0016790 | thiolester hydrolase activity | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0046914 | transition metal ion binding | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0004221 | ubiquitin thiolesterase activity | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0008270 | zinc ion binding | 2 (50.00%) | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0003680 | AT DNA binding | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0003677 | DNA binding | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0016880 | acid-ammonia (or amide) ligase activity | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0016211 | ammonia ligase activity | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0016841 | ammonia-lyase activity | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0005516 | calmodulin binding | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0016840 | carbon-nitrogen lyase activity | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:1901363 | heterocyclic compound binding | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0016874 | ligase activity | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0016879 | ligase activity, forming carbon-nitrogen bonds | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0016829 | lyase activity | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0003676 | nucleic acid binding | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0097159 | organic cyclic compound binding | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0005515 | protein binding | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0043565 | sequence-specific DNA binding | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Cellular Component (back to top)
Click table-header(s) to enable sortingGO | Description | #Associated genes | ath | bra | cme | egr | gma | ptr | ppe | sly | stu | vvi |
---|---|---|---|---|---|---|---|---|---|---|---|---|
GO:0005623 | cell | 2 (50.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
GO:0044464 | cell part | 2 (50.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
GO:0005622 | intracellular | 2 (50.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
GO:0044424 | intracellular part | 2 (50.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
GO:0005737 | cytoplasm | 1 (25.00%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
GO:0043231 | intracellular membrane-bounded organelle | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0043229 | intracellular organelle | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0043227 | membrane-bounded organelle | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0005634 | nucleus | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
GO:0043226 | organelle | 1 (25.00%) | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |