PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_668
Name: TCA1MOTIF
Description: TCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoter

#Associated genes: 486
#Associated MapMan terms: 183

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	92 (18.93%)	12	12	6	14	18	9	11	10
27.3	RNA.regulation of transcription	70 (14.40%)	8	11	3	9	13	6	11	9
29	protein	51 (10.49%)	3	15	3	7	6	8	5	4
29.4	protein.postranslational modification	25 (5.14%)	0	8	0	4	5	5	1	2
30	signalling	22 (4.53%)	5	4	0	3	6	2	1	1
29.5	protein.degradation	18 (3.70%)	3	5	2	1	1	1	4	1
31	cell	16 (3.29%)	2	4	1	2	2	2	1	2
26	misc	14 (2.88%)	2	3	5	0	1	0	3	0
27.1	RNA.processing	14 (2.88%)	2	1	2	2	4	2	0	1
33	development	12 (2.47%)	2	0	0	4	0	1	2	3
34	transport	12 (2.47%)	1	3	0	3	1	2	1	1
29.4.1	protein.postranslational modification.kinase	11 (2.26%)	0	5	0	1	3	1	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	11 (2.26%)	0	5	0	1	3	1	0	1
33.99	development.unspecified	11 (2.26%)	2	0	0	4	0	1	1	3
31.1	cell.organisation	10 (2.06%)	2	3	0	1	1	2	1	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	9 (1.85%)	1	3	0	0	1	1	2	1
27.4	RNA.RNA binding	9 (1.85%)	2	0	1	4	1	1	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	8 (1.65%)	1	1	0	3	1	2	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	8 (1.65%)	1	0	1	1	1	0	2	2
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	7 (1.44%)	1	0	1	1	2	1	0	1
28	DNA	7 (1.44%)	1	0	1	2	1	1	1	0
10	cell wall	6 (1.23%)	0	2	2	0	0	0	1	1
20	stress	6 (1.23%)	2	0	0	0	2	2	0	0
27.1.1	RNA.processing.splicing	6 (1.23%)	1	0	1	1	2	1	0	0
28.1	DNA.synthesis/chromatin structure	6 (1.23%)	1	0	1	2	1	1	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	6 (1.23%)	1	0	1	2	1	1	0	0
29.5.11	protein.degradation.ubiquitin	6 (1.23%)	1	1	1	1	0	0	2	0
30.2	signalling.receptor kinases	6 (1.23%)	0	1	0	1	3	1	0	0
20.2	stress.abiotic	5 (1.03%)	2	0	0	0	1	2	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	5 (1.03%)	2	0	0	0	1	0	2	0
30.3	signalling.calcium	5 (1.03%)	2	0	0	1	1	0	0	1
30.5	signalling.G-proteins	5 (1.03%)	1	1	0	0	1	1	1	0
27.3.99	RNA.regulation of transcription.unclassified	4 (0.82%)	0	0	0	1	2	0	0	1
29.5.5	protein.degradation.serine protease	4 (0.82%)	0	1	1	0	1	0	0	1
30.2.17	signalling.receptor kinases.DUF 26	4 (0.82%)	0	1	0	1	1	1	0	0
30.4	signalling.phosphinositides	4 (0.82%)	1	2	0	1	0	0	0	0
31.3	cell.cycle	4 (0.82%)	0	1	0	1	1	0	0	1
1	PS	3 (0.62%)	0	1	0	0	2	0	0	0
11	lipid metabolism	3 (0.62%)	1	0	0	0	0	0	0	2
11.1	lipid metabolism.FA synthesis and FA elongation	3 (0.62%)	1	0	0	0	0	0	0	2
16	secondary metabolism	3 (0.62%)	1	1	0	0	0	0	0	1
17	hormone metabolism	3 (0.62%)	1	0	0	0	1	0	1	0
20.2.1	stress.abiotic.heat	3 (0.62%)	1	0	0	0	1	1	0	0
23	nucleotide metabolism	3 (0.62%)	1	0	0	1	0	0	1	0
26.5	misc.acyl transferases	3 (0.62%)	0	2	0	0	0	0	1	0
26.7	misc.oxidases - copper, flavone etc	3 (0.62%)	2	0	1	0	0	0	0	0
27.1.19	RNA.processing.ribonucleases	3 (0.62%)	0	0	1	1	1	0	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	3 (0.62%)	1	0	0	2	0	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	3 (0.62%)	0	1	0	0	2	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	3 (0.62%)	0	0	0	0	1	1	0	1
27.3.5	RNA.regulation of transcription.ARR	3 (0.62%)	0	1	0	0	0	0	1	1
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	3 (0.62%)	0	0	0	0	2	0	1	0
29.1	protein.aa activation	3 (0.62%)	0	0	1	0	0	1	0	1
29.1.19	protein.aa activation.arginine-tRNA ligase	3 (0.62%)	0	0	1	0	0	1	0	1
29.2.1.1.2.51	protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.L51/S25/CI-B8	3 (0.62%)	1	1	0	0	0	0	1	0
1.1	PS.lightreaction	2 (0.41%)	0	0	0	0	2	0	0	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	2 (0.41%)	0	0	0	0	2	0	0	0
8	TCA / org transformation	2 (0.41%)	1	0	0	1	0	0	0	0
10.5	cell wall.cell wall proteins	2 (0.41%)	0	0	1	0	0	0	1	0
10.5.4	cell wall.cell wall proteins.HRGP	2 (0.41%)	0	0	1	0	0	0	1	0
13.1.2.3.23	amino acid metabolism.synthesis.glutamate family.arginine.argininosuccinate lyase	2 (0.41%)	1	0	0	0	0	0	1	0
16.8	secondary metabolism.flavonoids	2 (0.41%)	1	1	0	0	0	0	0	0
16.8.2	secondary metabolism.flavonoids.chalcones	2 (0.41%)	1	1	0	0	0	0	0	0
17.2	hormone metabolism.auxin	2 (0.41%)	0	0	0	0	1	0	1	0
17.2.2	hormone metabolism.auxin.signal transduction	2 (0.41%)	0	0	0	0	1	0	1	0
20.2.3	stress.abiotic.drought/salt	2 (0.41%)	1	0	0	0	0	1	0	0
23.1	nucleotide metabolism.synthesis	2 (0.41%)	1	0	0	1	0	0	0	0
23.1.2	nucleotide metabolism.synthesis.purine	2 (0.41%)	1	0	0	1	0	0	0	0
26.12	misc.peroxidases	2 (0.41%)	0	1	0	0	0	0	1	0
26.2	misc.UDP glucosyl and glucoronyl transferases	2 (0.41%)	0	0	2	0	0	0	0	0
26.23	misc.rhodanese	2 (0.41%)	0	0	1	0	0	0	1	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	2 (0.41%)	1	0	0	0	0	0	0	1
27.3.29	RNA.regulation of transcription.TCP transcription factor family	2 (0.41%)	0	0	0	0	1	0	1	0
27.3.36	RNA.regulation of transcription.Argonaute	2 (0.41%)	0	0	0	2	0	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	2 (0.41%)	0	0	0	0	0	0	1	1
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	2 (0.41%)	0	2	0	0	0	0	0	0
27.3.50	RNA.regulation of transcription.General Transcription	2 (0.41%)	0	1	1	0	0	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	2 (0.41%)	0	0	0	0	0	1	0	1
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	2 (0.41%)	0	0	0	0	1	0	1	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	2 (0.41%)	0	0	0	1	0	0	1	0
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	2 (0.41%)	0	1	0	0	0	0	0	1
29.2	protein.synthesis	2 (0.41%)	0	0	0	1	0	1	0	0
29.3	protein.targeting	2 (0.41%)	0	1	0	1	0	0	0	0
29.5.1	protein.degradation.subtilases	2 (0.41%)	1	1	0	0	0	0	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	2 (0.41%)	0	0	1	0	0	0	1	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	2 (0.41%)	0	0	0	0	2	0	0	0
34.1	transport.p- and v-ATPases	2 (0.41%)	0	0	0	1	0	1	0	0
34.16	transport.ABC transporters and multidrug resistance systems	2 (0.41%)	0	0	0	0	1	0	1	0
34.19	transport.Major Intrinsic Proteins	2 (0.41%)	0	0	0	1	0	0	0	1
34.19.3	transport.Major Intrinsic Proteins.NIP	2 (0.41%)	0	0	0	1	0	0	0	1
8.2	TCA / org transformation.other organic acid transformations	2 (0.41%)	1	0	0	1	0	0	0	0
34.8	transport.metabolite transporters at the envelope membrane	2 (0.41%)	0	1	0	0	0	1	0	0
8.2.11	TCA / org transformation.other organic acid transformatons.atp-citrate lyase	2 (0.41%)	1	0	0	1	0	0	0	0
1.3	PS.calvin cycle	1 (0.21%)	0	1	0	0	0	0	0	0
1.3.4	PS.calvin cycle.GAP	1 (0.21%)	0	1	0	0	0	0	0	0
3	minor CHO metabolism	1 (0.21%)	0	0	0	0	0	0	0	1
4	glycolysis	1 (0.21%)	0	0	0	0	0	1	0	0
6	gluconeogenesis / glyoxylate cycle	1 (0.21%)	0	0	0	0	1	0	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.21%)	0	0	0	0	0	0	1	0
10.2	cell wall.cellulose synthesis	1 (0.21%)	0	1	0	0	0	0	0	0
10.3	cell wall.hemicellulose synthesis	1 (0.21%)	0	0	1	0	0	0	0	0
10.6	cell wall.degradation	1 (0.21%)	0	0	0	0	0	0	0	1
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.21%)	0	0	0	0	0	0	0	1
10.8	cell wall.pectin*esterases	1 (0.21%)	0	1	0	0	0	0	0	0
10.8.2	cell wall.pectin*esterases.acetyl esterase	1 (0.21%)	0	1	0	0	0	0	0	0
11.1.1	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation	1 (0.21%)	1	0	0	0	0	0	0	0
11.1.1.1	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation.homomeric Enzyme	1 (0.21%)	1	0	0	0	0	0	0	0
11.1.10	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	1 (0.21%)	0	0	0	0	0	0	0	1
11.1.15	lipid metabolism.FA synthesis and FA elongation.ACP desaturase	1 (0.21%)	0	0	0	0	0	0	0	1
13	amino acid metabolism	1 (0.21%)	0	1	0	0	0	0	0	0
13.2	amino acid metabolism.degradation	1 (0.21%)	0	1	0	0	0	0	0	0
13.2.2	amino acid metabolism.degradation.glutamate family	1 (0.21%)	0	1	0	0	0	0	0	0
13.2.2.3	amino acid metabolism.degradation.glutamate family.arginine	1 (0.21%)	0	1	0	0	0	0	0	0
16.10	secondary metabolism.simple phenols	1 (0.21%)	0	0	0	0	0	0	0	1
16.8.2.1	secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase	1 (0.21%)	1	0	0	0	0	0	0	0
17.3	hormone metabolism.brassinosteroid	1 (0.21%)	1	0	0	0	0	0	0	0
17.3.1	hormone metabolism.brassinosteroid.synthesis-degradation	1 (0.21%)	1	0	0	0	0	0	0	0
17.3.1.1	hormone metabolism.brassinosteroid.synthesis-degradation.BRs	1 (0.21%)	1	0	0	0	0	0	0	0
17.3.1.1.3	hormone metabolism.brassinosteroid.synthesis-degradation.BRs.CPD	1 (0.21%)	1	0	0	0	0	0	0	0
20.1	stress.biotic	1 (0.21%)	0	0	0	0	1	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.21%)	0	0	0	0	1	0	0	0
21	redox	1 (0.21%)	0	0	0	0	0	0	1	0
21.4	redox.glutaredoxins	1 (0.21%)	0	0	0	0	0	0	1	0
23.1.2.1	nucleotide metabolism.synthesis.purine.amidophosphoribosyltransferase	1 (0.21%)	0	0	0	1	0	0	0	0
23.1.2.3	nucleotide metabolism.synthesis.purine.GAR transformylase	1 (0.21%)	1	0	0	0	0	0	0	0
23.3	nucleotide metabolism.salvage	1 (0.21%)	0	0	0	0	0	0	1	0
23.3.3	nucleotide metabolism.salvage.NUDIX hydrolases	1 (0.21%)	0	0	0	0	0	0	1	0
24	Biodegradation of Xenobiotics	1 (0.21%)	0	0	0	0	0	0	0	1
24.2	Biodegradation of Xenobiotics.lactoylglutathione lyase	1 (0.21%)	0	0	0	0	0	0	0	1
26.28	misc.GDSL-motif lipase	1 (0.21%)	0	0	1	0	0	0	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	1 (0.21%)	0	0	0	0	1	0	0	0
27.1.3	RNA.processing.3 end processing	1 (0.21%)	1	0	0	0	0	0	0	0
27.1.3.9	RNA.processing.3 end processing.CstF64	1 (0.21%)	1	0	0	0	0	0	0	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	1 (0.21%)	0	0	0	1	0	0	0	0
27.3.17	RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family	1 (0.21%)	0	1	0	0	0	0	0	0
27.3.18	RNA.regulation of transcription.E2F/DP transcription factor family	1 (0.21%)	0	0	0	0	0	0	1	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.21%)	0	0	0	1	0	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.21%)	0	1	0	0	0	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.21%)	0	0	0	0	0	1	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.21%)	1	0	0	0	0	0	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.21%)	0	0	0	0	0	1	0	0
27.3.52	RNA.regulation of transcription.Global transcription factor group	1 (0.21%)	0	0	1	0	0	0	0	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	1 (0.21%)	1	0	0	0	0	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	1 (0.21%)	1	0	0	0	0	0	0	0
28.1.3.2.1	DNA.synthesis/chromatin structure.histone.core.H2A	1 (0.21%)	1	0	0	0	0	0	0	0
28.2	DNA.repair	1 (0.21%)	0	0	0	0	0	0	1	0
29.2.1.1.1.2.12	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L12	1 (0.21%)	0	1	0	0	0	0	0	0
29.2.1.1.3.1.15	protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.30S subunit.S15	1 (0.21%)	0	0	0	0	0	0	0	1
29.2.1.2.1.26	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S26	1 (0.21%)	0	0	0	1	0	0	0	0
29.2.1.2.2.11	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L11	1 (0.21%)	0	0	0	0	0	0	1	0
29.2.1.2.2.34	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34	1 (0.21%)	0	0	1	0	0	0	0	0
29.2.1.2.2.35	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35	1 (0.21%)	1	0	0	0	0	0	0	0
29.2.1.2.2.523	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23A	1 (0.21%)	0	1	0	0	0	0	0	0
29.2.2	protein.synthesis.ribosome biogenesis	1 (0.21%)	0	0	0	0	0	1	0	0
29.2.2.3	protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications	1 (0.21%)	0	0	0	0	0	1	0	0
29.2.2.3.3	protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.methylotransferases	1 (0.21%)	0	0	0	0	0	1	0	0
29.2.3	protein.synthesis.initiation	1 (0.21%)	0	0	0	1	0	0	0	0
29.3.1	protein.targeting.nucleus	1 (0.21%)	0	1	0	0	0	0	0	0
29.3.3	protein.targeting.chloroplast	1 (0.21%)	0	0	0	1	0	0	0	0
29.5.11.20	protein.degradation.ubiquitin.proteasom	1 (0.21%)	0	1	0	0	0	0	0	0
29.5.11.4.1	protein.degradation.ubiquitin.E3.HECT	1 (0.21%)	0	0	0	0	0	0	1	0
29.5.11.4.5.2	protein.degradation.ubiquitin.E3.BTB/POZ Cullin3.BTB/POZ	1 (0.21%)	0	0	0	0	0	0	0	1
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.21%)	1	0	0	0	0	0	0	0
29.5.2	protein.degradation.autophagy	1 (0.21%)	0	1	0	0	0	0	0	0
29.5.4	protein.degradation.aspartate protease	1 (0.21%)	1	0	0	0	0	0	0	0
29.5.7	protein.degradation.metalloprotease	1 (0.21%)	0	0	0	0	0	0	1	0
3.6	minor CHO metabolism.callose	1 (0.21%)	0	0	0	0	0	0	0	1
29.6	protein.folding	1 (0.21%)	0	1	0	0	0	0	0	0
30.11	signalling.light	1 (0.21%)	0	0	0	0	1	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	1 (0.21%)	0	0	0	0	1	0	0	0
30.2.99	signalling.receptor kinases.misc	1 (0.21%)	0	1	0	0	0	0	0	0
4.3	glycolysis.unclear/dually targeted	1 (0.21%)	0	0	0	0	0	1	0	0
6.3	gluconeogenesis / glyoxylate cycle.Malate DH	1 (0.21%)	0	0	0	0	1	0	0	0
9.7	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	1 (0.21%)	0	0	0	0	0	0	1	0
30.6	signalling.MAP kinases	1 (0.21%)	1	0	0	0	0	0	0	0
31.2	cell.division	1 (0.21%)	0	0	0	0	0	0	0	1
31.4	cell.vesicle transport	1 (0.21%)	0	0	1	0	0	0	0	0
33.1	development.storage proteins	1 (0.21%)	0	0	0	0	0	0	1	0
34.18	transport.unspecified anions	1 (0.21%)	1	0	0	0	0	0	0	0
34.21	transport.calcium	1 (0.21%)	0	0	0	1	0	0	0	0
34.3	transport.amino acids	1 (0.21%)	0	1	0	0	0	0	0	0
34.7	transport.phosphate	1 (0.21%)	0	1	0	0	0	0	0	0
4.3.12	glycolysis.unclear/dually targeted.phosphoglycerate mutase	1 (0.21%)	0	0	0	0	0	1	0	0