Gene Ontology terms associated with a binding site

Binding site
Motif_665
Name
ACEATCHS
Description
ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system
#Associated genes
34
#Associated GO terms
324
 
Biological Process
Molecular Function
Cellular Component






Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell23 (67.65%)2000184233
GO:0044464cell part23 (67.65%)2000184233
GO:0005622intracellular18 (52.94%)2000162232
GO:0043229intracellular organelle18 (52.94%)2000162232
GO:0044424intracellular part18 (52.94%)2000162232
GO:0043226organelle18 (52.94%)2000162232
GO:0043231intracellular membrane-bounded organelle17 (50.00%)2000152232
GO:0043227membrane-bounded organelle17 (50.00%)2000152232
GO:0016020membrane16 (47.06%)2200132222
GO:0005737cytoplasm15 (44.12%)2000141232
GO:0044444cytoplasmic part15 (44.12%)2000141232
GO:0009507chloroplast9 (26.47%)0000031131
GO:0009536plastid9 (26.47%)0000031131
GO:0044425membrane part8 (23.53%)1000121111
GO:0031224intrinsic to membrane7 (20.59%)1000121101
GO:0071944cell periphery6 (17.65%)0000022101
GO:0044446intracellular organelle part6 (17.65%)2000000121
GO:0044422organelle part6 (17.65%)2000000121
GO:0005886plasma membrane6 (17.65%)0000022101
GO:0016021integral to membrane4 (11.76%)1000110100
GO:0005794Golgi apparatus3 (8.82%)1000110000
GO:0031225anchored to membrane3 (8.82%)0000011001
GO:0046658anchored to plasma membrane3 (8.82%)0000011001
GO:0044434chloroplast part3 (8.82%)0000000120
GO:0009534chloroplast thylakoid3 (8.82%)0000000120
GO:0009535chloroplast thylakoid membrane3 (8.82%)0000000120
GO:0005768endosome3 (8.82%)1000110000
GO:0031226intrinsic to plasma membrane3 (8.82%)0000011001
GO:0005634nucleus3 (8.82%)1000011000
GO:0031090organelle membrane3 (8.82%)2000000001
GO:0031984organelle subcompartment3 (8.82%)0000000120
GO:0034357photosynthetic membrane3 (8.82%)0000000120
GO:0044459plasma membrane part3 (8.82%)0000011001
GO:0044435plastid part3 (8.82%)0000000120
GO:0031976plastid thylakoid3 (8.82%)0000000120
GO:0055035plastid thylakoid membrane3 (8.82%)0000000120
GO:0009579thylakoid3 (8.82%)0000000120
GO:0042651thylakoid membrane3 (8.82%)0000000120
GO:0044436thylakoid part3 (8.82%)0000000120
GO:0005802trans-Golgi network3 (8.82%)1000110000
GO:0009941chloroplast envelope2 (5.88%)0000000110
GO:0005783endoplasmic reticulum2 (5.88%)1000000100
GO:0031975envelope2 (5.88%)0000000110
GO:0031967organelle envelope2 (5.88%)0000000110
GO:0000325plant-type vacuole2 (5.88%)1000000001
GO:0009705plant-type vacuole membrane2 (5.88%)1000000001
GO:0009526plastid envelope2 (5.88%)0000000110
GO:0005774vacuolar membrane2 (5.88%)1000000001
GO:0044437vacuolar part2 (5.88%)1000000001
GO:0005773vacuole2 (5.88%)1000000001
GO:0044431Golgi apparatus part1 (2.94%)1000000000
GO:0000139Golgi membrane1 (2.94%)1000000000
GO:0042807central vacuole1 (2.94%)0000000001
GO:0005694chromosome1 (2.94%)0000010000
GO:0012505endomembrane system1 (2.94%)1000000000
GO:0043232intracellular non-membrane-bounded organelle1 (2.94%)0000010000
GO:0032991macromolecular complex1 (2.94%)0000000010
GO:0043228non-membrane-bounded organelle1 (2.94%)0000010000
GO:0009521photosystem1 (2.94%)0000000010
GO:0009523photosystem II1 (2.94%)0000000010
GO:0043234protein complex1 (2.94%)0000000010
GO:0000326protein storage vacuole1 (2.94%)0000000001
GO:0000322storage vacuole1 (2.94%)0000000001

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0003824catalytic activity14 (41.18%)2000152121
GO:0005488binding12 (35.29%)1000053120
GO:1901363heterocyclic compound binding11 (32.35%)0000053120
GO:0097159organic cyclic compound binding11 (32.35%)0000053120
GO:0016740transferase activity8 (23.53%)2000131010
GO:0005524ATP binding7 (20.59%)0000031120
GO:0030554adenyl nucleotide binding7 (20.59%)0000031120
GO:0032559adenyl ribonucleotide binding7 (20.59%)0000031120
GO:0043168anion binding7 (20.59%)0000031120
GO:0097367carbohydrate derivative binding7 (20.59%)0000031120
GO:0043167ion binding7 (20.59%)0000031120
GO:0001882nucleoside binding7 (20.59%)0000031120
GO:1901265nucleoside phosphate binding7 (20.59%)0000031120
GO:0000166nucleotide binding7 (20.59%)0000031120
GO:0001883purine nucleoside binding7 (20.59%)0000031120
GO:0017076purine nucleotide binding7 (20.59%)0000031120
GO:0032550purine ribonucleoside binding7 (20.59%)0000031120
GO:0035639purine ribonucleoside triphosphate binding7 (20.59%)0000031120
GO:0032555purine ribonucleotide binding7 (20.59%)0000031120
GO:0032549ribonucleoside binding7 (20.59%)0000031120
GO:0032553ribonucleotide binding7 (20.59%)0000031120
GO:0036094small molecule binding7 (20.59%)0000031120
GO:0003677DNA binding5 (14.71%)0000032000
GO:0003676nucleic acid binding5 (14.71%)0000032000
GO:0016301kinase activity4 (11.76%)0000021010
GO:0016773phosphotransferase activity, alcohol group as acceptor4 (11.76%)0000021010
GO:0004672protein kinase activity4 (11.76%)0000021010
GO:0016772transferase activity, transferring phosphorus-containing groups4 (11.76%)0000021010
GO:0016887ATPase activity3 (8.82%)0000010110
GO:0008106alcohol dehydrogenase (NADP+) activity3 (8.82%)0000011001
GO:0004033aldo-keto reductase (NADP) activity3 (8.82%)0000011001
GO:0003682chromatin binding3 (8.82%)0000012000
GO:0016787hydrolase activity3 (8.82%)0000010110
GO:0016817hydrolase activity, acting on acid anhydrides3 (8.82%)0000010110
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides3 (8.82%)0000010110
GO:0017111nucleoside-triphosphatase activity3 (8.82%)0000010110
GO:0016491oxidoreductase activity3 (8.82%)0000011001
GO:0016614oxidoreductase activity, acting on CH-OH group of donors3 (8.82%)0000011001
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor3 (8.82%)0000011001
GO:0004674protein serine/threonine kinase activity3 (8.82%)0000011010
GO:0016462pyrophosphatase activity3 (8.82%)0000010110
GO:0016757transferase activity, transferring glycosyl groups3 (8.82%)1000110000
GO:0016758transferase activity, transferring hexosyl groups3 (8.82%)1000110000
GO:0004175endopeptidase activity2 (5.88%)0000000110
GO:0004222metalloendopeptidase activity2 (5.88%)0000000110
GO:0008237metallopeptidase activity2 (5.88%)0000000110
GO:0008233peptidase activity2 (5.88%)0000000110
GO:0070011peptidase activity, acting on L-amino acid peptides2 (5.88%)0000000110
GO:0042623ATPase activity, coupled1 (2.94%)0000010000
GO:0061505DNA topoisomerase II activity1 (2.94%)0000010000
GO:0003916DNA topoisomerase activity1 (2.94%)0000010000
GO:0003918DNA topoisomerase type II (ATP-hydrolyzing) activity1 (2.94%)0000010000
GO:0008094DNA-dependent ATPase activity1 (2.94%)0000010000
GO:0016853isomerase activity1 (2.94%)0000010000
GO:0060089molecular transducer activity1 (2.94%)0000010000
GO:0016210naringenin-chalcone synthase activity1 (2.94%)1000000000
GO:0001071nucleic acid binding transcription factor activity1 (2.94%)0000001000
GO:0045735nutrient reservoir activity1 (2.94%)0000010000
GO:0000156phosphorelay response regulator activity1 (2.94%)0000010000
GO:0005515protein binding1 (2.94%)1000000000
GO:0000988protein binding transcription factor activity1 (2.94%)0000001000
GO:0003700sequence-specific DNA binding transcription factor activity1 (2.94%)0000001000
GO:0004871signal transducer activity1 (2.94%)0000010000
GO:0003713transcription coactivator activity1 (2.94%)0000001000
GO:0003712transcription cofactor activity1 (2.94%)0000001000
GO:0000989transcription factor binding transcription factor activity1 (2.94%)0000001000
GO:0016746transferase activity, transferring acyl groups1 (2.94%)1000000000
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups1 (2.94%)1000000000
GO:0005215transporter activity1 (2.94%)0000000001

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0008152metabolic process17 (50.00%)1000064132
GO:0044237cellular metabolic process14 (41.18%)1000053131
GO:0009987cellular process14 (41.18%)1000053131
GO:0071704organic substance metabolic process12 (35.29%)1000053120
GO:0044238primary metabolic process12 (35.29%)1000053120
GO:0044260cellular macromolecule metabolic process11 (32.35%)0000053120
GO:0043170macromolecule metabolic process11 (32.35%)0000053120
GO:0065007biological regulation10 (29.41%)1000032130
GO:0050789regulation of biological process10 (29.41%)1000032130
GO:0019222regulation of metabolic process10 (29.41%)1000032130
GO:0031323regulation of cellular metabolic process9 (26.47%)0000032130
GO:0050794regulation of cellular process9 (26.47%)0000032130
GO:0044699single-organism process8 (23.53%)1000022111
GO:0044710single-organism metabolic process7 (20.59%)1000012111
GO:0006725cellular aromatic compound metabolic process6 (17.65%)1000032000
GO:0044267cellular protein metabolic process6 (17.65%)0000021120
GO:1901360organic cyclic compound metabolic process6 (17.65%)1000032000
GO:0019538protein metabolic process6 (17.65%)0000021120
GO:0019438aromatic compound biosynthetic process5 (14.71%)1000022000
GO:0009058biosynthetic process5 (14.71%)1000022000
GO:0044249cellular biosynthetic process5 (14.71%)1000022000
GO:0034641cellular nitrogen compound metabolic process5 (14.71%)0000032000
GO:0006091generation of precursor metabolites and energy5 (14.71%)0000010130
GO:0046483heterocycle metabolic process5 (14.71%)0000032000
GO:0006807nitrogen compound metabolic process5 (14.71%)0000032000
GO:0090304nucleic acid metabolic process5 (14.71%)0000032000
GO:0006139nucleobase-containing compound metabolic process5 (14.71%)0000032000
GO:1901362organic cyclic compound biosynthetic process5 (14.71%)1000022000
GO:1901576organic substance biosynthetic process5 (14.71%)1000022000
GO:0055114oxidation-reduction process5 (14.71%)0000011111
GO:0015979photosynthesis5 (14.71%)0000010130
GO:0019684photosynthesis, light reaction5 (14.71%)0000010130
GO:0009889regulation of biosynthetic process5 (14.71%)1000022000
GO:0043467regulation of generation of precursor metabolites and energy5 (14.71%)0000010130
GO:0010109regulation of photosynthesis5 (14.71%)0000010130
GO:0042548regulation of photosynthesis, light reaction5 (14.71%)0000010130
GO:0080090regulation of primary metabolic process5 (14.71%)1000022000
GO:0044763single-organism cellular process5 (14.71%)1000011110
GO:0032774RNA biosynthetic process4 (11.76%)0000022000
GO:0016070RNA metabolic process4 (11.76%)0000022000
GO:0034645cellular macromolecule biosynthetic process4 (11.76%)0000022000
GO:0044271cellular nitrogen compound biosynthetic process4 (11.76%)0000022000
GO:0006464cellular protein modification process4 (11.76%)0000021010
GO:0010467gene expression4 (11.76%)0000022000
GO:0018130heterocycle biosynthetic process4 (11.76%)0000022000
GO:0009059macromolecule biosynthetic process4 (11.76%)0000022000
GO:0043412macromolecule modification4 (11.76%)0000021010
GO:0034654nucleobase-containing compound biosynthetic process4 (11.76%)0000022000
GO:0006796phosphate-containing compound metabolic process4 (11.76%)0000021010
GO:0006793phosphorus metabolic process4 (11.76%)0000021010
GO:0016310phosphorylation4 (11.76%)0000021010
GO:0036211protein modification process4 (11.76%)0000021010
GO:0006468protein phosphorylation4 (11.76%)0000021010
GO:2001141regulation of RNA biosynthetic process4 (11.76%)0000022000
GO:0051252regulation of RNA metabolic process4 (11.76%)0000022000
GO:0031326regulation of cellular biosynthetic process4 (11.76%)0000022000
GO:2000112regulation of cellular macromolecule biosynthetic process4 (11.76%)0000022000
GO:0010468regulation of gene expression4 (11.76%)0000022000
GO:0010556regulation of macromolecule biosynthetic process4 (11.76%)0000022000
GO:0060255regulation of macromolecule metabolic process4 (11.76%)0000022000
GO:0051171regulation of nitrogen compound metabolic process4 (11.76%)0000022000
GO:0019219regulation of nucleobase-containing compound metabolic process4 (11.76%)0000022000
GO:0006355regulation of transcription, DNA-dependent4 (11.76%)0000022000
GO:0050896response to stimulus4 (11.76%)1000010110
GO:0006351transcription, DNA-templated4 (11.76%)0000022000
GO:0009056catabolic process3 (8.82%)0000000111
GO:0044248cellular catabolic process3 (8.82%)0000000111
GO:0007623circadian rhythm3 (8.82%)0000020010
GO:0009628response to abiotic stimulus3 (8.82%)1000000110
GO:0009416response to light stimulus3 (8.82%)1000000110
GO:0009314response to radiation3 (8.82%)1000000110
GO:0048511rhythmic process3 (8.82%)0000020010
GO:0006259DNA metabolic process2 (5.88%)0000011000
GO:0010304PSII associated light-harvesting complex II catabolic process2 (5.88%)0000000110
GO:0044265cellular macromolecule catabolic process2 (5.88%)0000000110
GO:0044257cellular protein catabolic process2 (5.88%)0000000110
GO:0022900electron transport chain2 (5.88%)0000000110
GO:0051234establishment of localization2 (5.88%)1000000001
GO:0051179localization2 (5.88%)1000000001
GO:0009057macromolecule catabolic process2 (5.88%)0000000110
GO:0048519negative regulation of biological process2 (5.88%)0000000110
GO:0031324negative regulation of cellular metabolic process2 (5.88%)0000000110
GO:0048523negative regulation of cellular process2 (5.88%)0000000110
GO:0009892negative regulation of metabolic process2 (5.88%)0000000110
GO:0043155negative regulation of photosynthesis, light reaction2 (5.88%)0000000110
GO:1901575organic substance catabolic process2 (5.88%)0000000110
GO:0010205photoinhibition2 (5.88%)0000000110
GO:0009767photosynthetic electron transport chain2 (5.88%)0000000110
GO:0048518positive regulation of biological process2 (5.88%)0000011000
GO:0030163protein catabolic process2 (5.88%)0000000110
GO:0006508proteolysis2 (5.88%)0000000110
GO:0009644response to high light intensity2 (5.88%)0000000110
GO:0009642response to light intensity2 (5.88%)0000000110
GO:0044711single-organism biosynthetic process2 (5.88%)1000001000
GO:0006810transport2 (5.88%)1000000001
GO:0071103DNA conformation change1 (2.94%)0000010000
GO:0042023DNA endoreduplication1 (2.94%)0000001000
GO:0006260DNA replication1 (2.94%)0000001000
GO:0006265DNA topological change1 (2.94%)0000010000
GO:0006261DNA-dependent DNA replication1 (2.94%)0000001000
GO:0048856anatomical structure development1 (2.94%)0000001000
GO:0009718anthocyanin-containing compound biosynthetic process1 (2.94%)1000000000
GO:0046283anthocyanin-containing compound metabolic process1 (2.94%)1000000000
GO:0006914autophagy1 (2.94%)0000000001
GO:0009926auxin polar transport1 (2.94%)1000000000
GO:0060918auxin transport1 (2.94%)1000000000
GO:0007154cell communication1 (2.94%)0000010000
GO:0007049cell cycle1 (2.94%)0000001000
GO:0044786cell cycle DNA replication1 (2.94%)0000001000
GO:0022402cell cycle process1 (2.94%)0000001000
GO:0042546cell wall biogenesis1 (2.94%)0000001000
GO:0071554cell wall organization or biogenesis1 (2.94%)0000001000
GO:0044085cellular component biogenesis1 (2.94%)0000001000
GO:0071840cellular component organization or biogenesis1 (2.94%)0000001000
GO:0042180cellular ketone metabolic process1 (2.94%)1000000000
GO:0051716cellular response to stimulus1 (2.94%)0000010000
GO:0009715chalcone biosynthetic process1 (2.94%)1000000000
GO:0009714chalcone metabolic process1 (2.94%)1000000000
GO:0032502developmental process1 (2.94%)0000001000
GO:0003006developmental process involved in reproduction1 (2.94%)0000001000
GO:0009813flavonoid biosynthetic process1 (2.94%)1000000000
GO:0009812flavonoid metabolic process1 (2.94%)1000000000
GO:0009914hormone transport1 (2.94%)1000000000
GO:0042181ketone biosynthetic process1 (2.94%)1000000000
GO:0044706multi-multicellular organism process1 (2.94%)0000001000
GO:0051704multi-organism process1 (2.94%)0000001000
GO:0044703multi-organism reproductive process1 (2.94%)0000001000
GO:0032501multicellular organismal process1 (2.94%)0000001000
GO:0009699phenylpropanoid biosynthetic process1 (2.94%)1000000000
GO:0009698phenylpropanoid metabolic process1 (2.94%)1000000000
GO:0000160phosphorelay signal transduction system1 (2.94%)0000010000
GO:0042549photosystem II stabilization1 (2.94%)0000000010
GO:0046148pigment biosynthetic process1 (2.94%)1000000000
GO:0042440pigment metabolic process1 (2.94%)1000000000
GO:0009832plant-type cell wall biogenesis1 (2.94%)0000001000
GO:0071669plant-type cell wall organization or biogenesis1 (2.94%)0000001000
GO:0048868pollen tube development1 (2.94%)0000001000
GO:0009856pollination1 (2.94%)0000001000
GO:0051254positive regulation of RNA metabolic process1 (2.94%)0000001000
GO:0009891positive regulation of biosynthetic process1 (2.94%)0000001000
GO:0031328positive regulation of cellular biosynthetic process1 (2.94%)0000001000
GO:0031325positive regulation of cellular metabolic process1 (2.94%)0000001000
GO:0048522positive regulation of cellular process1 (2.94%)0000001000
GO:0042753positive regulation of circadian rhythm1 (2.94%)0000010000
GO:0010628positive regulation of gene expression1 (2.94%)0000001000
GO:0010557positive regulation of macromolecule biosynthetic process1 (2.94%)0000001000
GO:0010604positive regulation of macromolecule metabolic process1 (2.94%)0000001000
GO:0009893positive regulation of metabolic process1 (2.94%)0000001000
GO:0051173positive regulation of nitrogen compound metabolic process1 (2.94%)0000001000
GO:0045935positive regulation of nucleobase-containing compound metabolic process1 (2.94%)0000001000
GO:0045893positive regulation of transcription, DNA-dependent1 (2.94%)0000001000
GO:0032875regulation of DNA endoreduplication1 (2.94%)0000001000
GO:0051052regulation of DNA metabolic process1 (2.94%)0000001000
GO:0006275regulation of DNA replication1 (2.94%)0000001000
GO:0090329regulation of DNA-dependent DNA replication1 (2.94%)0000001000
GO:0031540regulation of anthocyanin biosynthetic process1 (2.94%)1000000000
GO:0031537regulation of anthocyanin metabolic process1 (2.94%)1000000000
GO:0065008regulation of biological quality1 (2.94%)1000000000
GO:0051726regulation of cell cycle1 (2.94%)0000001000
GO:0010564regulation of cell cycle process1 (2.94%)0000001000
GO:0044087regulation of cellular component biogenesis1 (2.94%)0000001000
GO:0042752regulation of circadian rhythm1 (2.94%)0000010000
GO:0009962regulation of flavonoid biosynthetic process1 (2.94%)1000000000
GO:0010817regulation of hormone levels1 (2.94%)1000000000
GO:2000652regulation of secondary cell wall biogenesis1 (2.94%)0000001000
GO:0000003reproduction1 (2.94%)0000001000
GO:0022414reproductive process1 (2.94%)0000001000
GO:0009411response to UV1 (2.94%)1000000000
GO:0010224response to UV-B1 (2.94%)1000000000
GO:0009733response to auxin1 (2.94%)1000000000
GO:0009743response to carbohydrate1 (2.94%)1000000000
GO:0042221response to chemical1 (2.94%)1000000000
GO:0034285response to disaccharide1 (2.94%)1000000000
GO:0009719response to endogenous stimulus1 (2.94%)1000000000
GO:0009629response to gravity1 (2.94%)1000000000
GO:0009725response to hormone1 (2.94%)1000000000
GO:0009753response to jasmonic acid1 (2.94%)1000000000
GO:0010033response to organic substance1 (2.94%)1000000000
GO:0006979response to oxidative stress1 (2.94%)1000000000
GO:1901700response to oxygen-containing compound1 (2.94%)1000000000
GO:0006950response to stress1 (2.94%)1000000000
GO:0009744response to sucrose1 (2.94%)1000000000
GO:0009611response to wounding1 (2.94%)1000000000
GO:0009834secondary cell wall biogenesis1 (2.94%)0000001000
GO:0019748secondary metabolic process1 (2.94%)1000000000
GO:0044550secondary metabolite biosynthetic process1 (2.94%)1000000000
GO:0007165signal transduction1 (2.94%)0000010000
GO:0023052signaling1 (2.94%)0000010000
GO:0044700single organism signaling1 (2.94%)0000010000
GO:0044765single-organism transport1 (2.94%)1000000000
GO:0044283small molecule biosynthetic process1 (2.94%)1000000000
GO:0044281small molecule metabolic process1 (2.94%)1000000000