PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_633
Name: PE2FNTRNR1A
Description: pE2F (proximal E2F elemen) at -143bp of tobacco RNR1a promoter; E2F factors involved in gene induction at the G1/S transition of the cell cycle; Important for regulating specific RNR1a (ribonucleotide reductase large subunit) gene expression in response to UV-C irradiation

#Associated genes: 81
#Associated MapMan terms: 67

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
29	protein	16 (19.75%)	1	5	2	2	3	2	0	1
27	RNA	13 (16.05%)	0	0	2	9	0	1	0	1
27.3	RNA.regulation of transcription	12 (14.81%)	0	0	2	9	0	1	0	0
29.4	protein.postranslational modification	7 (8.64%)	0	3	1	1	2	0	0	0
29.5	protein.degradation	7 (8.64%)	1	2	1	1	1	1	0	0
28	DNA	6 (7.41%)	1	0	0	3	0	0	1	1
28.1	DNA.synthesis/chromatin structure	5 (6.17%)	0	0	0	3	0	0	1	1
29.5.1	protein.degradation.subtilases	5 (6.17%)	1	2	0	1	0	1	0	0
30	signalling	5 (6.17%)	0	1	2	0	0	2	0	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	4 (4.94%)	0	0	0	3	0	1	0	0
31	cell	4 (4.94%)	2	0	0	1	0	0	1	0
27.3.99	RNA.regulation of transcription.unclassified	3 (3.70%)	0	0	2	1	0	0	0	0
29.4.1	protein.postranslational modification.kinase	3 (3.70%)	0	1	0	0	2	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	3 (3.70%)	0	1	0	0	2	0	0	0
31.1	cell.organisation	3 (3.70%)	2	0	0	0	0	0	1	0
2	major CHO metabolism	2 (2.47%)	0	0	1	0	1	0	0	0
2.2	major CHO metabolism.degradation	2 (2.47%)	0	0	1	0	1	0	0	0
2.2.2	major CHO metabolism.degradation.starch	2 (2.47%)	0	0	1	0	1	0	0	0
2.2.2.1	major CHO metabolism.degradation.starch.starch cleavage	2 (2.47%)	0	0	1	0	1	0	0	0
2.2.2.1.2	major CHO metabolism.degradation.starch.starch cleavage.beta amylase	2 (2.47%)	0	0	1	0	1	0	0	0
13	amino acid metabolism	2 (2.47%)	1	1	0	0	0	0	0	0
13.2	amino acid metabolism.degradation	2 (2.47%)	1	1	0	0	0	0	0	0
13.2.1	amino acid metabolism.degradation.central amino acid metabolism	2 (2.47%)	1	1	0	0	0	0	0	0
13.2.1.2	amino acid metabolism.degradation.central amino acid metabolism.aspartate	2 (2.47%)	1	1	0	0	0	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	2 (2.47%)	0	0	0	2	0	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	2 (2.47%)	0	0	0	2	0	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	2 (2.47%)	0	0	0	2	0	0	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	2 (2.47%)	0	0	0	2	0	0	0	0
29.2.1.2.1.5	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S5	2 (2.47%)	1	0	0	0	1	0	0	0
29.3	protein.targeting	2 (2.47%)	0	0	0	0	0	1	0	1
29.3.3	protein.targeting.chloroplast	2 (2.47%)	0	0	0	0	0	1	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	2 (2.47%)	0	0	0	0	1	1	0	0
30.4	signalling.phosphinositides	2 (2.47%)	0	0	2	0	0	0	0	0
33	development	2 (2.47%)	0	0	0	2	0	0	0	0
33.99	development.unspecified	2 (2.47%)	0	0	0	2	0	0	0	0
1	PS	1 (1.23%)	0	0	0	0	0	0	1	0
1.1	PS.lightreaction	1 (1.23%)	0	0	0	0	0	0	1	0
1.1.1	PS.lightreaction.photosystem II	1 (1.23%)	0	0	0	0	0	0	1	0
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	1 (1.23%)	0	0	0	0	0	0	1	0
9	mitochondrial electron transport / ATP synthesis	1 (1.23%)	0	0	0	1	0	0	0	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	1 (1.23%)	0	0	0	1	0	0	0	0
10.3	cell wall.hemicellulose synthesis	1 (1.23%)	0	0	0	0	0	0	0	1
10.3.2	cell wall.hemicellulose synthesis.glucuronoxylan	1 (1.23%)	0	0	0	0	0	0	0	1
17.2	hormone metabolism.auxin	1 (1.23%)	0	1	0	0	0	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (1.23%)	0	1	0	0	0	0	0	0
20.2	stress.abiotic	1 (1.23%)	0	0	0	1	0	0	0	0
20.2.2	stress.abiotic.cold	1 (1.23%)	0	0	0	1	0	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (1.23%)	0	0	0	1	0	0	0	0
27.3.36	RNA.regulation of transcription.Argonaute	1 (1.23%)	0	0	0	1	0	0	0	0
27.3.42	RNA.regulation of transcription.Bromodomain proteins	1 (1.23%)	0	0	0	1	0	0	0	0
27.4	RNA.RNA binding	1 (1.23%)	0	0	0	0	0	0	0	1
28.2	DNA.repair	1 (1.23%)	1	0	0	0	0	0	0	0
29.2.1.2.2.80	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P0	1 (1.23%)	1	0	0	0	0	0	0	0
29.5.11	protein.degradation.ubiquitin	1 (1.23%)	0	0	0	0	1	0	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (1.23%)	0	0	0	0	1	0	0	0
29.5.3	protein.degradation.cysteine protease	1 (1.23%)	0	0	1	0	0	0	0	0
30.2	signalling.receptor kinases	1 (1.23%)	0	0	0	0	0	1	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	1 (1.23%)	0	0	0	0	0	1	0	0
30.3	signalling.calcium	1 (1.23%)	0	0	0	0	0	1	0	0
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	1 (1.23%)	0	0	1	0	0	0	0	0
30.4.5	signalling.phosphinositides.inositol-1,3,4-trisphosphate 5/6-kinase	1 (1.23%)	0	0	1	0	0	0	0	0
30.5	signalling.G-proteins	1 (1.23%)	0	1	0	0	0	0	0	0
31.2	cell.division	1 (1.23%)	0	0	0	1	0	0	0	0
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	1 (1.23%)	0	0	0	1	0	0	0	0
10	cell wall	1 (1.23%)	0	0	0	0	0	0	0	1
17	hormone metabolism	1 (1.23%)	0	1	0	0	0	0	0	0
20	stress	1 (1.23%)	0	0	0	1	0	0	0	0