PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_604
Name: EMHVCHORD
Description: Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter

#Associated genes: 692
#Associated MapMan terms: 180

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	131 (18.93%)	3	4	6	44	33	16	13	12
27.3	RNA.regulation of transcription	116 (16.76%)	3	4	6	36	32	15	10	10
29	protein	59 (8.53%)	0	1	1	20	15	11	4	7
30	signalling	37 (5.35%)	0	1	6	5	9	6	5	5
34	transport	30 (4.34%)	2	4	1	5	6	6	1	5
29.4	protein.postranslational modification	29 (4.19%)	0	0	0	10	7	6	3	3
33	development	25 (3.61%)	2	3	1	4	7	4	1	3
30.2	signalling.receptor kinases	23 (3.32%)	0	1	5	3	6	4	2	2
28	DNA	21 (3.03%)	3	1	1	7	5	2	1	1
26	misc	20 (2.89%)	1	0	1	1	7	6	1	3
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	20 (2.89%)	0	1	1	9	2	4	1	2
29.5	protein.degradation	18 (2.60%)	0	1	1	5	6	3	1	1
31	cell	18 (2.60%)	0	0	1	7	3	1	3	3
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	17 (2.46%)	0	0	2	6	5	3	1	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	17 (2.46%)	0	0	3	3	4	4	1	2
20	stress	16 (2.31%)	1	1	3	6	1	2	1	1
28.1	DNA.synthesis/chromatin structure	15 (2.17%)	2	1	1	3	4	2	1	1
33.99	development.unspecified	15 (2.17%)	2	3	0	3	3	3	1	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	13 (1.88%)	0	0	1	4	7	0	1	0
15	metal handling	11 (1.59%)	0	1	1	2	1	2	3	1
27.4	RNA.RNA binding	11 (1.59%)	0	0	0	7	0	1	2	1
29.5.11	protein.degradation.ubiquitin	11 (1.59%)	0	0	1	2	5	3	0	0
15.2	metal handling.binding, chelation and storage	10 (1.45%)	0	1	1	2	1	1	3	1
17	hormone metabolism	10 (1.45%)	0	0	1	1	1	4	2	1
20.2	stress.abiotic	10 (1.45%)	0	1	3	4	1	0	1	0
31.1	cell.organisation	9 (1.30%)	0	0	1	3	1	1	1	2
10	cell wall	8 (1.16%)	1	0	0	4	1	1	0	1
29.3	protein.targeting	8 (1.16%)	0	0	0	5	1	1	0	1
33.3	development.squamosa promoter binding like (SPL)	8 (1.16%)	0	0	1	1	4	0	0	2
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	7 (1.01%)	0	0	0	2	3	2	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	7 (1.01%)	0	0	1	3	0	1	0	2
27.3.67	RNA.regulation of transcription.putative transcription regulator	7 (1.01%)	0	0	0	2	0	1	3	1
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	7 (1.01%)	0	0	0	2	3	1	1	0
27.3.99	RNA.regulation of transcription.unclassified	7 (1.01%)	0	0	1	2	1	2	0	1
29.3.4	protein.targeting.secretory pathway	7 (1.01%)	0	0	0	4	1	1	0	1
34.99	transport.misc	7 (1.01%)	1	3	0	1	0	0	0	2
20.1	stress.biotic	6 (0.87%)	1	0	0	2	0	2	0	1
27.3.18	RNA.regulation of transcription.E2F/DP transcription factor family	6 (0.87%)	0	0	0	2	2	0	1	1
28.99	DNA.unspecified	6 (0.87%)	1	0	0	4	1	0	0	0
29.3.4.1	protein.targeting.secretory pathway.ER	6 (0.87%)	0	0	0	3	1	1	0	1
34.19	transport.Major Intrinsic Proteins	6 (0.87%)	1	0	1	0	2	1	0	1
17.2	hormone metabolism.auxin	5 (0.72%)	0	0	0	1	0	2	1	1
20.2.99	stress.abiotic.unspecified	5 (0.72%)	0	0	1	3	0	0	1	0
26.19	misc.plastocyanin-like	5 (0.72%)	0	0	1	1	1	1	1	0
29.4.1	protein.postranslational modification.kinase	5 (0.72%)	0	0	0	1	2	1	1	0
29.5.11.20	protein.degradation.ubiquitin.proteasom	5 (0.72%)	0	0	0	2	2	1	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	5 (0.72%)	0	0	0	4	1	0	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	5 (0.72%)	0	0	0	0	3	2	0	0
29.5.5	protein.degradation.serine protease	5 (0.72%)	0	1	0	2	1	0	0	1
30.3	signalling.calcium	5 (0.72%)	0	0	1	0	2	0	2	0
31.2	cell.division	5 (0.72%)	0	0	0	2	2	0	1	0
34.1	transport.p- and v-ATPases	5 (0.72%)	0	0	0	3	0	1	0	1
34.19.2	transport.Major Intrinsic Proteins.TIP	5 (0.72%)	0	0	1	0	2	1	0	1
4	glycolysis	4 (0.58%)	0	0	1	1	0	1	0	1
12.2.1	N-metabolism.ammonia metabolism.glutamate synthase	4 (0.58%)	0	2	0	0	0	1	0	1
20.2.1	stress.abiotic.heat	4 (0.58%)	0	1	2	1	0	0	0	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	4 (0.58%)	1	0	0	0	1	1	1	0
29.2.1.1.1.1.12	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S12	4 (0.58%)	0	0	0	0	4	0	0	0
29.2.1.2.2.38	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L38	4 (0.58%)	0	0	1	1	0	1	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	4 (0.58%)	0	0	0	1	2	1	0	0
4.2	glycolysis.plastid branch	4 (0.58%)	0	0	1	1	0	1	0	1
12.2	N-metabolism.ammonia metabolism	4 (0.58%)	0	2	0	0	0	1	0	1
4.2.2	glycolysis.plastid branch.phosphoglucomutase (PGM)	4 (0.58%)	0	0	1	1	0	1	0	1
12	N-metabolism	4 (0.58%)	0	2	0	0	0	1	0	1
16	secondary metabolism	4 (0.58%)	0	0	0	1	1	2	0	0
23	nucleotide metabolism	4 (0.58%)	2	0	0	2	0	0	0	0
1	PS	3 (0.43%)	0	0	1	0	0	0	1	1
1.1	PS.lightreaction	3 (0.43%)	0	0	1	0	0	0	1	1
11	lipid metabolism	3 (0.43%)	0	1	0	2	0	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	3 (0.43%)	0	0	0	1	0	1	0	1
17.5	hormone metabolism.ethylene	3 (0.43%)	0	0	1	0	0	1	1	0
26.10	misc.cytochrome P450	3 (0.43%)	0	0	0	0	1	2	0	0
26.22	misc.short chain dehydrogenase/reductase (SDR)	3 (0.43%)	1	0	0	0	2	0	0	0
27.1	RNA.processing	3 (0.43%)	0	0	0	1	1	0	0	1
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	3 (0.43%)	0	2	0	1	0	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	3 (0.43%)	0	1	0	1	1	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	3 (0.43%)	1	0	0	0	2	0	0	0
29.1	protein.aa activation	3 (0.43%)	0	0	0	0	0	1	0	2
30.11	signalling.light	3 (0.43%)	0	0	0	2	0	0	0	1
30.2.17	signalling.receptor kinases.DUF 26	3 (0.43%)	0	0	2	0	0	0	1	0
30.5	signalling.G-proteins	3 (0.43%)	0	0	0	0	0	2	0	1
31.3	cell.cycle	3 (0.43%)	0	0	0	2	0	0	1	0
34.16	transport.ABC transporters and multidrug resistance systems	3 (0.43%)	0	0	0	0	2	1	0	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	2 (0.29%)	0	0	1	0	0	0	0	1
10.1	cell wall.precursor synthesis	2 (0.29%)	0	0	0	2	0	0	0	0
10.1.6	cell wall.precursor synthesis.GAE	2 (0.29%)	0	0	0	2	0	0	0	0
10.6	cell wall.degradation	2 (0.29%)	0	0	0	0	1	0	0	1
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	2 (0.29%)	0	0	0	0	1	0	0	1
11.9	lipid metabolism.lipid degradation	2 (0.29%)	0	0	0	2	0	0	0	0
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	2 (0.29%)	0	0	0	2	0	0	0	0
11.9.3.1	lipid metabolism.lipid degradation.lysophospholipases.phospholipase D	2 (0.29%)	0	0	0	2	0	0	0	0
16.8	secondary metabolism.flavonoids	2 (0.29%)	0	0	0	0	1	1	0	0
16.8.2	secondary metabolism.flavonoids.chalcones	2 (0.29%)	0	0	0	0	1	1	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	2 (0.29%)	0	0	0	0	0	1	1	0
17.4	hormone metabolism.cytokinin	2 (0.29%)	0	0	0	0	1	1	0	0
17.4.2	hormone metabolism.cytokinin.signal transduction	2 (0.29%)	0	0	0	0	1	1	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	2 (0.29%)	0	0	1	0	0	1	0	0
23.2	nucleotide metabolism.degradation	2 (0.29%)	1	0	0	1	0	0	0	0
26.4	misc.beta 1,3 glucan hydrolases	2 (0.29%)	0	0	0	0	1	0	0	1
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	2 (0.29%)	0	0	0	1	1	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	2 (0.29%)	0	0	0	0	2	0	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	2 (0.29%)	0	0	0	0	2	0	0	0
29.1.9	protein.aa activation.valine-tRNA ligase	2 (0.29%)	0	0	0	0	0	0	0	2
29.2.1.1.1.1.7	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S7	2 (0.29%)	0	0	0	0	2	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	2 (0.29%)	2	0	0	0	0	0	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	2 (0.29%)	0	1	0	1	0	0	0	0
30.2.99	signalling.receptor kinases.misc	2 (0.29%)	0	0	0	0	2	0	0	0
30.4	signalling.phosphinositides	2 (0.29%)	0	0	0	0	0	0	1	1
34.2	transport.sugars	2 (0.29%)	0	0	0	0	1	1	0	0
1.1.1	PS.lightreaction.photosystem II	1 (0.14%)	0	0	0	0	0	0	1	0
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	1 (0.14%)	0	0	0	0	0	0	1	0
3	minor CHO metabolism	1 (0.14%)	0	0	0	0	0	0	0	1
10.2	cell wall.cellulose synthesis	1 (0.14%)	0	0	0	1	0	0	0	0
10.3	cell wall.hemicellulose synthesis	1 (0.14%)	1	0	0	0	0	0	0	0
10.3.2	cell wall.hemicellulose synthesis.glucuronoxylan	1 (0.14%)	1	0	0	0	0	0	0	0
10.5	cell wall.cell wall proteins	1 (0.14%)	0	0	0	0	0	1	0	0
10.5.3	cell wall.cell wall proteins.LRR	1 (0.14%)	0	0	0	0	0	1	0	0
10.7	cell wall.modification	1 (0.14%)	0	0	0	1	0	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	1 (0.14%)	0	1	0	0	0	0	0	0
11.1.13	lipid metabolism.FA synthesis and FA elongation.acyl-CoA binding protein	1 (0.14%)	0	1	0	0	0	0	0	0
16.1	secondary metabolism.isoprenoids	1 (0.14%)	0	0	0	0	0	1	0	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	1 (0.14%)	0	0	0	0	0	1	0	0
16.2	secondary metabolism.phenylpropanoids	1 (0.14%)	0	0	0	1	0	0	0	0
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	1 (0.14%)	0	0	0	0	0	0	1	0
21	redox	1 (0.14%)	0	0	0	0	1	0	0	0
21.1	redox.thioredoxin	1 (0.14%)	0	0	0	0	1	0	0	0
23.3	nucleotide metabolism.salvage	1 (0.14%)	0	0	0	1	0	0	0	0
23.3.1	nucleotide metabolism.salvage.phosphoribosyltransferases	1 (0.14%)	0	0	0	1	0	0	0	0
23.3.1.3	nucleotide metabolism.salvage.phosphoribosyltransferases.upp	1 (0.14%)	0	0	0	1	0	0	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	1 (0.14%)	1	0	0	0	0	0	0	0
23.4.1	nucleotide metabolism.phosphotransfer and pyrophosphatases.adenylate kinase	1 (0.14%)	1	0	0	0	0	0	0	0
26.11	misc.alcohol dehydrogenases	1 (0.14%)	0	0	0	0	0	0	0	1
26.12	misc.peroxidases	1 (0.14%)	0	0	0	0	1	0	0	0
26.13	misc.acid and other phosphatases	1 (0.14%)	0	0	0	0	1	0	0	0
26.14	misc.oxygenases	1 (0.14%)	0	0	0	0	0	0	0	1
26.27	misc.calcineurin-like phosphoesterase family protein	1 (0.14%)	0	0	0	0	0	1	0	0
26.3	misc.gluco-, galacto- and mannosidases	1 (0.14%)	0	0	0	0	0	1	0	0
26.3.2	misc.gluco-, galacto- and mannosidases.beta-galactosidase	1 (0.14%)	0	0	0	0	0	1	0	0
26.4.1	misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase	1 (0.14%)	0	0	0	0	1	0	0	0
26.7	misc.oxidases - copper, flavone etc	1 (0.14%)	0	0	0	0	0	1	0	0
27.1.1	RNA.processing.splicing	1 (0.14%)	0	0	0	0	1	0	0	0
27.2	RNA.transcription	1 (0.14%)	0	0	0	0	0	0	1	0
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	1 (0.14%)	0	0	0	0	1	0	0	0
27.3.15	RNA.regulation of transcription.CCAAT box binding factor family, HAP3	1 (0.14%)	1	0	0	0	0	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.14%)	0	0	0	0	0	0	0	1
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.14%)	0	0	0	0	1	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	1 (0.14%)	0	0	0	0	1	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (0.14%)	0	0	0	0	0	0	0	1
27.3.5	RNA.regulation of transcription.ARR	1 (0.14%)	0	0	0	0	0	0	0	1
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.14%)	0	0	0	0	1	0	0	0
27.3.55	RNA.regulation of transcription.HDA	1 (0.14%)	1	0	0	0	0	0	0	0
27.3.65	RNA.regulation of transcription.Polycomb Group (PcG)	1 (0.14%)	0	0	0	0	1	0	0	0
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	1 (0.14%)	0	0	0	1	0	0	0	0
28.1.3.1	DNA.synthesis/chromatin structure.histone.H1	1 (0.14%)	1	0	0	0	0	0	0	0
29.1.20	protein.aa activation.phenylalanine-tRNA ligase	1 (0.14%)	0	0	0	0	0	1	0	0
29.2	protein.synthesis	1 (0.14%)	0	0	0	0	1	0	0	0
29.2.1.1.1.1.2	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S2	1 (0.14%)	0	0	0	0	1	0	0	0
29.2.1.1.1.2.20	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L20	1 (0.14%)	0	1	0	0	0	0	0	0
29.2.1.2.1.31	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.SA	1 (0.14%)	0	1	0	0	0	0	0	0
29.2.3	protein.synthesis.initiation	1 (0.14%)	0	0	0	0	1	0	0	0
29.3.2	protein.targeting.mitochondria	1 (0.14%)	0	0	0	1	0	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.14%)	0	0	0	1	0	0	0	0
29.4.1.59	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase IX	1 (0.14%)	0	0	0	0	0	0	1	0
29.5.1	protein.degradation.subtilases	1 (0.14%)	0	0	0	0	0	0	1	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.14%)	0	0	1	0	0	0	0	0
29.5.3	protein.degradation.cysteine protease	1 (0.14%)	0	0	0	1	0	0	0	0
3.6	minor CHO metabolism.callose	1 (0.14%)	0	0	0	0	0	0	0	1
30.1	signalling.in sugar and nutrient physiology	1 (0.14%)	0	0	0	0	1	0	0	0
31.4	cell.vesicle transport	1 (0.14%)	0	0	0	0	0	0	0	1
33.2	development.late embryogenesis abundant	1 (0.14%)	0	0	0	0	0	1	0	0
33.30	development.multitarget	1 (0.14%)	0	0	0	0	0	0	0	1
33.30.1	development.multitarget.target of rapamycin	1 (0.14%)	0	0	0	0	0	0	0	1
34.13	transport.peptides and oligopeptides	1 (0.14%)	0	0	0	0	0	0	1	0
34.14	transport.unspecified cations	1 (0.14%)	0	0	0	1	0	0	0	0
34.15	transport.potassium	1 (0.14%)	0	0	0	0	0	1	0	0
34.18	transport.unspecified anions	1 (0.14%)	0	0	0	0	0	0	0	1
34.19.3	transport.Major Intrinsic Proteins.NIP	1 (0.14%)	1	0	0	0	0	0	0	0
34.3	transport.amino acids	1 (0.14%)	0	0	0	0	0	1	0	0
34.8	transport.metabolite transporters at the envelope membrane	1 (0.14%)	0	1	0	0	0	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	1 (0.14%)	0	0	0	0	1	0	0	0