Gene Ontology terms associated with a binding site

Binding site
Motif_589
Name
ARECOREZMGAPC4
Description
Putative binding site for a Myb found in the promoter of maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene; Essential for anaerobic induction
#Associated genes
42
#Associated GO terms
284
 
Biological Process
Molecular Function
Cellular Component






Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell18 (42.86%)5101343001
GO:0044464cell part18 (42.86%)5101343001
GO:0005622intracellular12 (28.57%)5000222001
GO:0043231intracellular membrane-bounded organelle12 (28.57%)5000222001
GO:0043229intracellular organelle12 (28.57%)5000222001
GO:0044424intracellular part12 (28.57%)5000222001
GO:0043227membrane-bounded organelle12 (28.57%)5000222001
GO:0043226organelle12 (28.57%)5000222001
GO:0016020membrane9 (21.43%)3101121000
GO:0071944cell periphery8 (19.05%)2101121000
GO:0005634nucleus8 (19.05%)5000201000
GO:0005886plasma membrane8 (19.05%)2101121000
GO:0005618cell wall7 (16.67%)2101120000
GO:0030312external encapsulating structure7 (16.67%)2101120000
GO:0009505plant-type cell wall7 (16.67%)2101120000
GO:0009531secondary cell wall7 (16.67%)2101120000
GO:0005737cytoplasm5 (11.90%)1000021001
GO:0044444cytoplasmic part4 (9.52%)0000021001
GO:0005773vacuole4 (9.52%)0000021001
GO:0032991macromolecular complex2 (4.76%)1000001000
GO:0044430cytoskeletal part1 (2.38%)1000000000
GO:0005856cytoskeleton1 (2.38%)1000000000
GO:0012505endomembrane system1 (2.38%)1000000000
GO:0031975envelope1 (2.38%)1000000000
GO:0043232intracellular non-membrane-bounded organelle1 (2.38%)1000000000
GO:0044446intracellular organelle part1 (2.38%)1000000000
GO:0015630microtubule cytoskeleton1 (2.38%)1000000000
GO:0043228non-membrane-bounded organelle1 (2.38%)1000000000
GO:0005635nuclear envelope1 (2.38%)1000000000
GO:0031965nuclear membrane1 (2.38%)1000000000
GO:0044428nuclear part1 (2.38%)1000000000
GO:0031967organelle envelope1 (2.38%)1000000000
GO:0031090organelle membrane1 (2.38%)1000000000
GO:0044422organelle part1 (2.38%)1000000000
GO:0043234protein complex1 (2.38%)1000000000
GO:0030529ribonucleoprotein complex1 (2.38%)0000001000
GO:0005819spindle1 (2.38%)1000000000
GO:0000922spindle pole1 (2.38%)1000000000

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding12 (28.57%)2202401001
GO:1901363heterocyclic compound binding10 (23.81%)2201301001
GO:0097159organic cyclic compound binding10 (23.81%)2201301001
GO:0003676nucleic acid binding9 (21.43%)1201301001
GO:0003677DNA binding7 (16.67%)1201300000
GO:0005088Ras guanyl-nucleotide exchange factor activity7 (16.67%)2101120000
GO:0005089Rho guanyl-nucleotide exchange factor activity7 (16.67%)2101120000
GO:0005085guanyl-nucleotide exchange factor activity7 (16.67%)2101120000
GO:0003824catalytic activity5 (11.90%)1000021001
GO:0005515protein binding5 (11.90%)0101300000
GO:0016787hydrolase activity4 (9.52%)0000021001
GO:0016798hydrolase activity, acting on glycosyl bonds4 (9.52%)0000021001
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds4 (9.52%)0000021001
GO:0004650polygalacturonase activity4 (9.52%)0000021001
GO:0043167ion binding2 (4.76%)1000100000
GO:0001071nucleic acid binding transcription factor activity2 (4.76%)1100000000
GO:1901265nucleoside phosphate binding2 (4.76%)1000001000
GO:0000166nucleotide binding2 (4.76%)1000001000
GO:0046983protein dimerization activity2 (4.76%)0000200000
GO:0046982protein heterodimerization activity2 (4.76%)0000200000
GO:0043565sequence-specific DNA binding2 (4.76%)0000200000
GO:0003700sequence-specific DNA binding transcription factor activity2 (4.76%)1100000000
GO:0036094small molecule binding2 (4.76%)1000001000
GO:0005524ATP binding1 (2.38%)1000000000
GO:0003723RNA binding1 (2.38%)0000001000
GO:0030554adenyl nucleotide binding1 (2.38%)1000000000
GO:0032559adenyl ribonucleotide binding1 (2.38%)1000000000
GO:0043168anion binding1 (2.38%)1000000000
GO:0097367carbohydrate derivative binding1 (2.38%)1000000000
GO:0043169cation binding1 (2.38%)0000100000
GO:0035173histone kinase activity1 (2.38%)1000000000
GO:0035175histone kinase activity (H3-S10 specific)1 (2.38%)1000000000
GO:0035174histone serine kinase activity1 (2.38%)1000000000
GO:0016301kinase activity1 (2.38%)1000000000
GO:0046872metal ion binding1 (2.38%)0000100000
GO:0001882nucleoside binding1 (2.38%)1000000000
GO:0016773phosphotransferase activity, alcohol group as acceptor1 (2.38%)1000000000
GO:0004672protein kinase activity1 (2.38%)1000000000
GO:0004674protein serine/threonine kinase activity1 (2.38%)1000000000
GO:0001883purine nucleoside binding1 (2.38%)1000000000
GO:0017076purine nucleotide binding1 (2.38%)1000000000
GO:0032550purine ribonucleoside binding1 (2.38%)1000000000
GO:0035639purine ribonucleoside triphosphate binding1 (2.38%)1000000000
GO:0032555purine ribonucleotide binding1 (2.38%)1000000000
GO:0032549ribonucleoside binding1 (2.38%)1000000000
GO:0032553ribonucleotide binding1 (2.38%)1000000000
GO:0016740transferase activity1 (2.38%)1000000000
GO:0016772transferase activity, transferring phosphorus-containing groups1 (2.38%)1000000000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0009987cellular process16 (38.10%)5202321001
GO:0008152metabolic process12 (28.57%)2101222002
GO:0071704organic substance metabolic process12 (28.57%)2101222002
GO:0044238primary metabolic process12 (28.57%)2101222002
GO:0048856anatomical structure development10 (23.81%)5101120000
GO:0009653anatomical structure morphogenesis10 (23.81%)5101120000
GO:0032502developmental process10 (23.81%)5101120000
GO:0007275multicellular organismal development10 (23.81%)5101120000
GO:0032501multicellular organismal process10 (23.81%)5101120000
GO:0048513organ development10 (23.81%)5101120000
GO:0044707single-multicellular organism process10 (23.81%)5101120000
GO:0044767single-organism developmental process10 (23.81%)5101120000
GO:0044699single-organism process10 (23.81%)5101120000
GO:0048731system development10 (23.81%)5101120000
GO:0016043cellular component organization9 (21.43%)4101120000
GO:0071840cellular component organization or biogenesis9 (21.43%)4101120000
GO:0044763single-organism cellular process9 (21.43%)4101120000
GO:0009888tissue development9 (21.43%)4101120000
GO:0006725cellular aromatic compound metabolic process8 (19.05%)2101201001
GO:0044260cellular macromolecule metabolic process8 (19.05%)2101201001
GO:0044237cellular metabolic process8 (19.05%)2101201001
GO:0034641cellular nitrogen compound metabolic process8 (19.05%)2101201001
GO:0048589developmental growth8 (19.05%)3101120000
GO:0008544epidermis development8 (19.05%)3101120000
GO:0040007growth8 (19.05%)3101120000
GO:0046483heterocycle metabolic process8 (19.05%)2101201001
GO:0043170macromolecule metabolic process8 (19.05%)2101201001
GO:0006807nitrogen compound metabolic process8 (19.05%)2101201001
GO:0090304nucleic acid metabolic process8 (19.05%)2101201001
GO:0006139nucleobase-containing compound metabolic process8 (19.05%)2101201001
GO:1901360organic cyclic compound metabolic process8 (19.05%)2101201001
GO:0043588skin development8 (19.05%)3101120000
GO:0016070RNA metabolic process7 (16.67%)2101201000
GO:0048468cell development7 (16.67%)2101120000
GO:0030154cell differentiation7 (16.67%)2101120000
GO:0016049cell growth7 (16.67%)2101120000
GO:0048469cell maturation7 (16.67%)2101120000
GO:0071555cell wall organization7 (16.67%)2101120000
GO:0071554cell wall organization or biogenesis7 (16.67%)2101120000
GO:0048869cellular developmental process7 (16.67%)2101120000
GO:0048588developmental cell growth7 (16.67%)2101120000
GO:0060560developmental growth involved in morphogenesis7 (16.67%)2101120000
GO:0021700developmental maturation7 (16.67%)2101120000
GO:0009913epidermal cell differentiation7 (16.67%)2101120000
GO:0030855epithelial cell differentiation7 (16.67%)2101120000
GO:0060429epithelium development7 (16.67%)2101120000
GO:0045229external encapsulating structure organization7 (16.67%)2101120000
GO:0010467gene expression7 (16.67%)2101201000
GO:0009664plant-type cell wall organization7 (16.67%)2101120000
GO:0071669plant-type cell wall organization or biogenesis7 (16.67%)2101120000
GO:0048364root development7 (16.67%)2101120000
GO:0010053root epidermal cell differentiation7 (16.67%)2101120000
GO:0080147root hair cell development7 (16.67%)2101120000
GO:0048765root hair cell differentiation7 (16.67%)2101120000
GO:0048767root hair elongation7 (16.67%)2101120000
GO:0010015root morphogenesis7 (16.67%)2101120000
GO:0022622root system development7 (16.67%)2101120000
GO:0010054trichoblast differentiation7 (16.67%)2101120000
GO:0048764trichoblast maturation7 (16.67%)2101120000
GO:0032774RNA biosynthetic process6 (14.29%)2101200000
GO:0019438aromatic compound biosynthetic process6 (14.29%)2101200000
GO:0065007biological regulation6 (14.29%)2101200000
GO:0009058biosynthetic process6 (14.29%)2101200000
GO:0044249cellular biosynthetic process6 (14.29%)2101200000
GO:0034645cellular macromolecule biosynthetic process6 (14.29%)2101200000
GO:0044271cellular nitrogen compound biosynthetic process6 (14.29%)2101200000
GO:0018130heterocycle biosynthetic process6 (14.29%)2101200000
GO:0009059macromolecule biosynthetic process6 (14.29%)2101200000
GO:0034654nucleobase-containing compound biosynthetic process6 (14.29%)2101200000
GO:1901362organic cyclic compound biosynthetic process6 (14.29%)2101200000
GO:1901576organic substance biosynthetic process6 (14.29%)2101200000
GO:2001141regulation of RNA biosynthetic process6 (14.29%)2101200000
GO:0051252regulation of RNA metabolic process6 (14.29%)2101200000
GO:0050789regulation of biological process6 (14.29%)2101200000
GO:0009889regulation of biosynthetic process6 (14.29%)2101200000
GO:0031326regulation of cellular biosynthetic process6 (14.29%)2101200000
GO:2000112regulation of cellular macromolecule biosynthetic process6 (14.29%)2101200000
GO:0031323regulation of cellular metabolic process6 (14.29%)2101200000
GO:0050794regulation of cellular process6 (14.29%)2101200000
GO:0010468regulation of gene expression6 (14.29%)2101200000
GO:0010556regulation of macromolecule biosynthetic process6 (14.29%)2101200000
GO:0060255regulation of macromolecule metabolic process6 (14.29%)2101200000
GO:0019222regulation of metabolic process6 (14.29%)2101200000
GO:0051171regulation of nitrogen compound metabolic process6 (14.29%)2101200000
GO:0019219regulation of nucleobase-containing compound metabolic process6 (14.29%)2101200000
GO:0080090regulation of primary metabolic process6 (14.29%)2101200000
GO:0006355regulation of transcription, DNA-dependent6 (14.29%)2101200000
GO:0006351transcription, DNA-templated6 (14.29%)2101200000
GO:0005975carbohydrate metabolic process4 (9.52%)0000021001
GO:0009791post-embryonic development3 (7.14%)3000000000
GO:0009886post-embryonic morphogenesis3 (7.14%)3000000000
GO:0050896response to stimulus3 (7.14%)2001000000
GO:0048367shoot system development3 (7.14%)3000000000
GO:0048646anatomical structure formation involved in morphogenesis2 (4.76%)2000000000
GO:0008283cell proliferation2 (4.76%)2000000000
GO:0003006developmental process involved in reproduction2 (4.76%)2000000000
GO:0048437floral organ development2 (4.76%)2000000000
GO:0048449floral organ formation2 (4.76%)2000000000
GO:0048444floral organ morphogenesis2 (4.76%)2000000000
GO:0048438floral whorl development2 (4.76%)2000000000
GO:0009908flower development2 (4.76%)2000000000
GO:0048507meristem development2 (4.76%)2000000000
GO:0048645organ formation2 (4.76%)2000000000
GO:0009887organ morphogenesis2 (4.76%)2000000000
GO:0006996organelle organization2 (4.76%)2000000000
GO:0048827phyllome development2 (4.76%)2000000000
GO:0048569post-embryonic organ development2 (4.76%)2000000000
GO:0048563post-embryonic organ morphogenesis2 (4.76%)2000000000
GO:0000003reproduction2 (4.76%)2000000000
GO:0022414reproductive process2 (4.76%)2000000000
GO:0048608reproductive structure development2 (4.76%)2000000000
GO:0061458reproductive system development2 (4.76%)2000000000
GO:0006950response to stress2 (4.76%)1001000000
GO:0044702single organism reproductive process2 (4.76%)2000000000
GO:0015074DNA integration1 (2.38%)0000000001
GO:0006259DNA metabolic process1 (2.38%)0000000001
GO:0006396RNA processing1 (2.38%)0000001000
GO:0048440carpel development1 (2.38%)1000000000
GO:0007049cell cycle1 (2.38%)1000000000
GO:0022402cell cycle process1 (2.38%)1000000000
GO:0051301cell division1 (2.38%)1000000000
GO:0044267cellular protein metabolic process1 (2.38%)1000000000
GO:0006464cellular protein modification process1 (2.38%)1000000000
GO:0016568chromatin modification1 (2.38%)1000000000
GO:0006325chromatin organization1 (2.38%)1000000000
GO:0006342chromatin silencing1 (2.38%)1000000000
GO:0051276chromosome organization1 (2.38%)1000000000
GO:0048465corolla development1 (2.38%)1000000000
GO:0016569covalent chromatin modification1 (2.38%)1000000000
GO:0000910cytokinesis1 (2.38%)1000000000
GO:0000911cytokinesis by cell plate formation1 (2.38%)1000000000
GO:0032506cytokinetic process1 (2.38%)1000000000
GO:0007010cytoskeleton organization1 (2.38%)1000000000
GO:0048464flower calyx development1 (2.38%)1000000000
GO:0016458gene silencing1 (2.38%)1000000000
GO:0048467gynoecium development1 (2.38%)1000000000
GO:0051567histone H3-K9 methylation1 (2.38%)1000000000
GO:0034968histone lysine methylation1 (2.38%)1000000000
GO:0016571histone methylation1 (2.38%)1000000000
GO:0016570histone modification1 (2.38%)1000000000
GO:0016572histone phosphorylation1 (2.38%)1000000000
GO:0043414macromolecule methylation1 (2.38%)1000000000
GO:0043412macromolecule modification1 (2.38%)1000000000
GO:0035266meristem growth1 (2.38%)1000000000
GO:0010073meristem maintenance1 (2.38%)1000000000
GO:0032259methylation1 (2.38%)1000000000
GO:0000226microtubule cytoskeleton organization1 (2.38%)1000000000
GO:0007017microtubule-based process1 (2.38%)1000000000
GO:0000278mitotic cell cycle1 (2.38%)1000000000
GO:0000281mitotic cytokinesis1 (2.38%)1000000000
GO:1902410mitotic cytokinetic process1 (2.38%)1000000000
GO:0051253negative regulation of RNA metabolic process1 (2.38%)1000000000
GO:0048519negative regulation of biological process1 (2.38%)1000000000
GO:0009890negative regulation of biosynthetic process1 (2.38%)1000000000
GO:0031327negative regulation of cellular biosynthetic process1 (2.38%)1000000000
GO:2000113negative regulation of cellular macromolecule biosynthetic process1 (2.38%)1000000000
GO:0031324negative regulation of cellular metabolic process1 (2.38%)1000000000
GO:0048523negative regulation of cellular process1 (2.38%)1000000000
GO:0010629negative regulation of gene expression1 (2.38%)1000000000
GO:0045814negative regulation of gene expression, epigenetic1 (2.38%)1000000000
GO:0010558negative regulation of macromolecule biosynthetic process1 (2.38%)1000000000
GO:0010605negative regulation of macromolecule metabolic process1 (2.38%)1000000000
GO:0009892negative regulation of metabolic process1 (2.38%)1000000000
GO:0051172negative regulation of nitrogen compound metabolic process1 (2.38%)1000000000
GO:0045934negative regulation of nucleobase-containing compound metabolic process1 (2.38%)1000000000
GO:0045892negative regulation of transcription, DNA-dependent1 (2.38%)1000000000
GO:0007389pattern specification process1 (2.38%)1000000000
GO:0048441petal development1 (2.38%)1000000000
GO:0048451petal formation1 (2.38%)1000000000
GO:0048446petal morphogenesis1 (2.38%)1000000000
GO:0006796phosphate-containing compound metabolic process1 (2.38%)1000000000
GO:0006793phosphorus metabolic process1 (2.38%)1000000000
GO:0016310phosphorylation1 (2.38%)1000000000
GO:0008213protein alkylation1 (2.38%)1000000000
GO:0019538protein metabolic process1 (2.38%)1000000000
GO:0006479protein methylation1 (2.38%)1000000000
GO:0036211protein modification process1 (2.38%)1000000000
GO:0006468protein phosphorylation1 (2.38%)1000000000
GO:0003002regionalization1 (2.38%)1000000000
GO:0042127regulation of cell proliferation1 (2.38%)1000000000
GO:0048638regulation of developmental growth1 (2.38%)1000000000
GO:0050793regulation of developmental process1 (2.38%)1000000000
GO:0040029regulation of gene expression, epigenetic1 (2.38%)1000000000
GO:0040008regulation of growth1 (2.38%)1000000000
GO:0048509regulation of meristem development1 (2.38%)1000000000
GO:0010075regulation of meristem growth1 (2.38%)1000000000
GO:2000026regulation of multicellular organismal development1 (2.38%)1000000000
GO:0051239regulation of multicellular organismal process1 (2.38%)1000000000
GO:0006979response to oxidative stress1 (2.38%)0001000000
GO:0048442sepal development1 (2.38%)1000000000
GO:0048453sepal formation1 (2.38%)1000000000
GO:0048447sepal morphogenesis1 (2.38%)1000000000
GO:0010016shoot system morphogenesis1 (2.38%)1000000000
GO:0044710single-organism metabolic process1 (2.38%)1000000000
GO:0010093specification of floral organ identity1 (2.38%)1000000000
GO:0010092specification of organ identity1 (2.38%)1000000000
GO:0010374stomatal complex development1 (2.38%)1000000000
GO:0010103stomatal complex morphogenesis1 (2.38%)1000000000