Gene Ontology terms associated with a binding site

Binding site
Motif_546
Name
AtWER
Description
Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis
#Associated genes
8
#Associated GO terms
226
 
Biological Process
Molecular Function
Cellular Component






Molecular Function (back to top)

Click table-header(s) to enable sorting
GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding6 (75.00%)0010311000
GO:0005515protein binding5 (62.50%)0010310000
GO:1901363heterocyclic compound binding3 (37.50%)0010011000
GO:0003676nucleic acid binding3 (37.50%)0010011000
GO:0097159organic cyclic compound binding3 (37.50%)0010011000
GO:0003677DNA binding2 (25.00%)0010010000
GO:0001071nucleic acid binding transcription factor activity2 (25.00%)0010010000
GO:0003700sequence-specific DNA binding transcription factor activity2 (25.00%)0010010000
GO:0004557alpha-galactosidase activity1 (12.50%)0000010000
GO:0003824catalytic activity1 (12.50%)0000010000
GO:0043169cation binding1 (12.50%)0000001000
GO:0047274galactinol-sucrose galactosyltransferase activity1 (12.50%)0000010000
GO:0015925galactosidase activity1 (12.50%)0000010000
GO:0008378galactosyltransferase activity1 (12.50%)0000010000
GO:0016787hydrolase activity1 (12.50%)0000010000
GO:0016798hydrolase activity, acting on glycosyl bonds1 (12.50%)0000010000
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds1 (12.50%)0000010000
GO:0043167ion binding1 (12.50%)0000001000
GO:0008289lipid binding1 (12.50%)0010000000
GO:0046872metal ion binding1 (12.50%)0000001000
GO:0046983protein dimerization activity1 (12.50%)0000010000
GO:0046982protein heterodimerization activity1 (12.50%)0000010000
GO:0052692raffinose alpha-galactosidase activity1 (12.50%)0000010000
GO:0043565sequence-specific DNA binding1 (12.50%)0010000000
GO:0016740transferase activity1 (12.50%)0000010000
GO:0016757transferase activity, transferring glycosyl groups1 (12.50%)0000010000
GO:0016758transferase activity, transferring hexosyl groups1 (12.50%)0000010000
GO:0046914transition metal ion binding1 (12.50%)0000001000
GO:0008270zinc ion binding1 (12.50%)0000001000

Biological Process (back to top)

Click table-header(s) to enable sorting
GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0044699single-organism process4 (50.00%)0010020001
GO:0009987cellular process3 (37.50%)0010010001
GO:0008152metabolic process3 (37.50%)0010020000
GO:0071704organic substance metabolic process3 (37.50%)0010020000
GO:0044238primary metabolic process3 (37.50%)0010020000
GO:0050896response to stimulus3 (37.50%)0000120000
GO:0032774RNA biosynthetic process2 (25.00%)0010010000
GO:0016070RNA metabolic process2 (25.00%)0010010000
GO:0048856anatomical structure development2 (25.00%)0010010000
GO:0019438aromatic compound biosynthetic process2 (25.00%)0010010000
GO:0065007biological regulation2 (25.00%)0010010000
GO:0009058biosynthetic process2 (25.00%)0010010000
GO:0048440carpel development2 (25.00%)0010010000
GO:0006725cellular aromatic compound metabolic process2 (25.00%)0010010000
GO:0044249cellular biosynthetic process2 (25.00%)0010010000
GO:0034645cellular macromolecule biosynthetic process2 (25.00%)0010010000
GO:0044260cellular macromolecule metabolic process2 (25.00%)0010010000
GO:0044237cellular metabolic process2 (25.00%)0010010000
GO:0044271cellular nitrogen compound biosynthetic process2 (25.00%)0010010000
GO:0034641cellular nitrogen compound metabolic process2 (25.00%)0010010000
GO:0032502developmental process2 (25.00%)0010010000
GO:0003006developmental process involved in reproduction2 (25.00%)0010010000
GO:0048437floral organ development2 (25.00%)0010010000
GO:0048438floral whorl development2 (25.00%)0010010000
GO:0009908flower development2 (25.00%)0010010000
GO:0010467gene expression2 (25.00%)0010010000
GO:0048467gynoecium development2 (25.00%)0010010000
GO:0018130heterocycle biosynthetic process2 (25.00%)0010010000
GO:0046483heterocycle metabolic process2 (25.00%)0010010000
GO:0009059macromolecule biosynthetic process2 (25.00%)0010010000
GO:0043170macromolecule metabolic process2 (25.00%)0010010000
GO:0007275multicellular organismal development2 (25.00%)0010010000
GO:0032501multicellular organismal process2 (25.00%)0010010000
GO:0006807nitrogen compound metabolic process2 (25.00%)0010010000
GO:0090304nucleic acid metabolic process2 (25.00%)0010010000
GO:0034654nucleobase-containing compound biosynthetic process2 (25.00%)0010010000
GO:0006139nucleobase-containing compound metabolic process2 (25.00%)0010010000
GO:0048513organ development2 (25.00%)0010010000
GO:1901362organic cyclic compound biosynthetic process2 (25.00%)0010010000
GO:1901360organic cyclic compound metabolic process2 (25.00%)0010010000
GO:1901576organic substance biosynthetic process2 (25.00%)0010010000
GO:0007389pattern specification process2 (25.00%)0010010000
GO:0048827phyllome development2 (25.00%)0010010000
GO:0009791post-embryonic development2 (25.00%)0010010000
GO:0048569post-embryonic organ development2 (25.00%)0010010000
GO:0003002regionalization2 (25.00%)0010010000
GO:2001141regulation of RNA biosynthetic process2 (25.00%)0010010000
GO:0051252regulation of RNA metabolic process2 (25.00%)0010010000
GO:0050789regulation of biological process2 (25.00%)0010010000
GO:0009889regulation of biosynthetic process2 (25.00%)0010010000
GO:0031326regulation of cellular biosynthetic process2 (25.00%)0010010000
GO:2000112regulation of cellular macromolecule biosynthetic process2 (25.00%)0010010000
GO:0031323regulation of cellular metabolic process2 (25.00%)0010010000
GO:0050794regulation of cellular process2 (25.00%)0010010000
GO:0010468regulation of gene expression2 (25.00%)0010010000
GO:0010556regulation of macromolecule biosynthetic process2 (25.00%)0010010000
GO:0060255regulation of macromolecule metabolic process2 (25.00%)0010010000
GO:0019222regulation of metabolic process2 (25.00%)0010010000
GO:0051171regulation of nitrogen compound metabolic process2 (25.00%)0010010000
GO:0019219regulation of nucleobase-containing compound metabolic process2 (25.00%)0010010000
GO:0080090regulation of primary metabolic process2 (25.00%)0010010000
GO:0006355regulation of transcription, DNA-dependent2 (25.00%)0010010000
GO:0000003reproduction2 (25.00%)0010010000
GO:0022414reproductive process2 (25.00%)0010010000
GO:0048608reproductive structure development2 (25.00%)0010010000
GO:0061458reproductive system development2 (25.00%)0010010000
GO:0042221response to chemical2 (25.00%)0000110000
GO:0009719response to endogenous stimulus2 (25.00%)0000110000
GO:0009725response to hormone2 (25.00%)0000110000
GO:0033993response to lipid2 (25.00%)0000110000
GO:0010033response to organic substance2 (25.00%)0000110000
GO:1901700response to oxygen-containing compound2 (25.00%)0000110000
GO:0048367shoot system development2 (25.00%)0010010000
GO:0044702single organism reproductive process2 (25.00%)0010010000
GO:0044707single-multicellular organism process2 (25.00%)0010010000
GO:0044763single-organism cellular process2 (25.00%)0000010001
GO:0044767single-organism developmental process2 (25.00%)0010010000
GO:0048731system development2 (25.00%)0010010000
GO:0006351transcription, DNA-templated2 (25.00%)0010010000
GO:0009943adaxial/abaxial axis specification1 (12.50%)0010000000
GO:0009955adaxial/abaxial pattern specification1 (12.50%)0010000000
GO:0048532anatomical structure arrangement1 (12.50%)0010000000
GO:0009653anatomical structure morphogenesis1 (12.50%)0010000000
GO:0010252auxin homeostasis1 (12.50%)0000010000
GO:0009798axis specification1 (12.50%)0010000000
GO:0016052carbohydrate catabolic process1 (12.50%)0000010000
GO:0005975carbohydrate metabolic process1 (12.50%)0000010000
GO:0009056catabolic process1 (12.50%)0000010000
GO:0007154cell communication1 (12.50%)0000010000
GO:0051641cellular localization1 (12.50%)0000000001
GO:0070727cellular macromolecule localization1 (12.50%)0000000001
GO:0034613cellular protein localization1 (12.50%)0000000001
GO:0070887cellular response to chemical stimulus1 (12.50%)0000010000
GO:0071495cellular response to endogenous stimulus1 (12.50%)0000010000
GO:0071370cellular response to gibberellin stimulus1 (12.50%)0000010000
GO:0032870cellular response to hormone stimulus1 (12.50%)0000010000
GO:0071396cellular response to lipid1 (12.50%)0000010000
GO:0071310cellular response to organic substance1 (12.50%)0000010000
GO:1901701cellular response to oxygen-containing compound1 (12.50%)0000010000
GO:0051716cellular response to stimulus1 (12.50%)0000010000
GO:0048878chemical homeostasis1 (12.50%)0000010000
GO:0009855determination of bilateral symmetry1 (12.50%)0010000000
GO:0009790embryo development1 (12.50%)0010000000
GO:0009793embryo development ending in seed dormancy1 (12.50%)0010000000
GO:0048508embryonic meristem development1 (12.50%)0010000000
GO:0090421embryonic meristem initiation1 (12.50%)0010000000
GO:0009880embryonic pattern specification1 (12.50%)0010000000
GO:0051234establishment of localization1 (12.50%)0000000001
GO:0051649establishment of localization in cell1 (12.50%)0000000001
GO:0045184establishment of protein localization1 (12.50%)0000000001
GO:0010154fruit development1 (12.50%)0010000000
GO:0009740gibberellic acid mediated signaling pathway1 (12.50%)0000010000
GO:0010476gibberellin mediated signaling pathway1 (12.50%)0000010000
GO:0042592homeostatic process1 (12.50%)0000010000
GO:0009755hormone-mediated signaling pathway1 (12.50%)0000010000
GO:0080060integument development1 (12.50%)0010000000
GO:0006886intracellular protein transport1 (12.50%)0000000001
GO:0046907intracellular transport1 (12.50%)0000000001
GO:0051179localization1 (12.50%)0000000001
GO:0033036macromolecule localization1 (12.50%)0000000001
GO:0048507meristem development1 (12.50%)0010000000
GO:0010014meristem initiation1 (12.50%)0010000000
GO:0009933meristem structural organization1 (12.50%)0010000000
GO:0048519negative regulation of biological process1 (12.50%)0000010000
GO:0010648negative regulation of cell communication1 (12.50%)0000010000
GO:0048523negative regulation of cellular process1 (12.50%)0000010000
GO:0009938negative regulation of gibberellic acid mediated signaling pathway1 (12.50%)0000010000
GO:0048585negative regulation of response to stimulus1 (12.50%)0000010000
GO:0009968negative regulation of signal transduction1 (12.50%)0000010000
GO:0023057negative regulation of signaling1 (12.50%)0000010000
GO:0009313oligosaccharide catabolic process1 (12.50%)0000010000
GO:0009311oligosaccharide metabolic process1 (12.50%)0000010000
GO:1901575organic substance catabolic process1 (12.50%)0000010000
GO:0071702organic substance transport1 (12.50%)0000000001
GO:0048481ovule development1 (12.50%)0010000000
GO:0035670plant-type ovary development1 (12.50%)0010000000
GO:0009944polarity specification of adaxial/abaxial axis1 (12.50%)0010000000
GO:0051254positive regulation of RNA metabolic process1 (12.50%)0000010000
GO:0048518positive regulation of biological process1 (12.50%)0000010000
GO:0009891positive regulation of biosynthetic process1 (12.50%)0000010000
GO:0031328positive regulation of cellular biosynthetic process1 (12.50%)0000010000
GO:0031325positive regulation of cellular metabolic process1 (12.50%)0000010000
GO:0048522positive regulation of cellular process1 (12.50%)0000010000
GO:0010628positive regulation of gene expression1 (12.50%)0000010000
GO:0010557positive regulation of macromolecule biosynthetic process1 (12.50%)0000010000
GO:0010604positive regulation of macromolecule metabolic process1 (12.50%)0000010000
GO:0009893positive regulation of metabolic process1 (12.50%)0000010000
GO:0051173positive regulation of nitrogen compound metabolic process1 (12.50%)0000010000
GO:0045935positive regulation of nucleobase-containing compound metabolic process1 (12.50%)0000010000
GO:0045893positive regulation of transcription, DNA-dependent1 (12.50%)0000010000
GO:0010072primary shoot apical meristem specification1 (12.50%)0010000000
GO:0008104protein localization1 (12.50%)0000000001
GO:0015031protein transport1 (12.50%)0000000001
GO:0034484raffinose catabolic process1 (12.50%)0000010000
GO:0033530raffinose metabolic process1 (12.50%)0000010000
GO:0065008regulation of biological quality1 (12.50%)0000010000
GO:0010646regulation of cell communication1 (12.50%)0000010000
GO:0009937regulation of gibberellic acid mediated signaling pathway1 (12.50%)0000010000
GO:0048583regulation of response to stimulus1 (12.50%)0000010000
GO:0009966regulation of signal transduction1 (12.50%)0000010000
GO:0023051regulation of signaling1 (12.50%)0000010000
GO:0009628response to abiotic stimulus1 (12.50%)0000010000
GO:0009737response to abscisic acid1 (12.50%)0000100000
GO:0097305response to alcohol1 (12.50%)0000100000
GO:0009739response to gibberellin stimulus1 (12.50%)0000010000
GO:0080167response to karrikin1 (12.50%)0000010000
GO:0006979response to oxidative stress1 (12.50%)0000010000
GO:0006950response to stress1 (12.50%)0000010000
GO:0048316seed development1 (12.50%)0010000000
GO:0010016shoot system morphogenesis1 (12.50%)0010000000
GO:0007165signal transduction1 (12.50%)0000010000
GO:0023052signaling1 (12.50%)0000010000
GO:0044700single organism signaling1 (12.50%)0000010000
GO:0044724single-organism carbohydrate catabolic process1 (12.50%)0000010000
GO:0044723single-organism carbohydrate metabolic process1 (12.50%)0000010000
GO:0044712single-organism catabolic process1 (12.50%)0000010000
GO:0044710single-organism metabolic process1 (12.50%)0000010000
GO:0065001specification of axis polarity1 (12.50%)0010000000
GO:0009799specification of symmetry1 (12.50%)0010000000
GO:0048480stigma development1 (12.50%)0000010000
GO:0048479style development1 (12.50%)0000010000
GO:0009888tissue development1 (12.50%)0010000000
GO:0006810transport1 (12.50%)0000000001
GO:0010051xylem and phloem pattern formation1 (12.50%)0000010000

Cellular Component (back to top)

Click table-header(s) to enable sorting
GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell3 (37.50%)0010010001
GO:0044464cell part3 (37.50%)0010010001
GO:0005622intracellular3 (37.50%)0010010001
GO:0043231intracellular membrane-bounded organelle2 (25.00%)0010010000
GO:0043229intracellular organelle2 (25.00%)0010010000
GO:0044424intracellular part2 (25.00%)0010010000
GO:0043227membrane-bounded organelle2 (25.00%)0010010000
GO:0005634nucleus2 (25.00%)0010010000
GO:0043226organelle2 (25.00%)0010010000
GO:0030054cell junction1 (12.50%)0000010000
GO:0005911cell-cell junction1 (12.50%)0000010000
GO:0009506plasmodesma1 (12.50%)0000010000
GO:0055044symplast1 (12.50%)0000010000