PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_544
Name: CACGCAATGMGH3
Description: Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein

#Associated genes: 236
#Associated MapMan terms: 98

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	51 (21.61%)	4	5	4	16	9	7	0	6
27.3	RNA.regulation of transcription	44 (18.64%)	3	5	4	14	7	6	0	5
29	protein	18 (7.63%)	1	2	3	2	5	5	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	13 (5.51%)	1	1	1	5	1	2	0	2
33	development	12 (5.08%)	0	0	1	4	4	2	0	1
33.99	development.unspecified	12 (5.08%)	0	0	1	4	4	2	0	1
29.4	protein.postranslational modification	10 (4.24%)	0	0	2	0	3	5	0	0
17	hormone metabolism	9 (3.81%)	0	1	1	2	2	2	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	9 (3.81%)	1	0	1	3	2	2	0	0
20	stress	7 (2.97%)	1	2	1	0	2	0	0	1
27.1	RNA.processing	7 (2.97%)	1	0	0	2	2	1	0	1
27.1.1	RNA.processing.splicing	7 (2.97%)	1	0	0	2	2	1	0	1
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	7 (2.97%)	1	0	1	2	1	1	0	1
11	lipid metabolism	6 (2.54%)	1	0	1	0	1	1	1	1
16	secondary metabolism	6 (2.54%)	0	1	1	0	2	1	0	1
20.2	stress.abiotic	6 (2.54%)	1	2	0	0	2	0	0	1
27.3.40	RNA.regulation of transcription.Aux/IAA family	6 (2.54%)	1	2	1	0	0	1	0	1
30	signalling	6 (2.54%)	0	1	1	1	0	1	0	2
31	cell	6 (2.54%)	2	1	0	1	1	1	0	0
10	cell wall	5 (2.12%)	0	0	1	1	2	0	0	1
16.10	secondary metabolism.simple phenols	5 (2.12%)	0	0	1	0	2	1	0	1
17.5	hormone metabolism.ethylene	5 (2.12%)	0	0	0	2	1	1	0	1
26	misc	5 (2.12%)	0	0	1	3	0	1	0	0
28	DNA	5 (2.12%)	1	0	0	2	0	0	0	2
29.5	protein.degradation	5 (2.12%)	0	1	1	2	1	0	0	0
34	transport	5 (2.12%)	1	0	0	1	1	1	0	1
11.9	lipid metabolism.lipid degradation	4 (1.69%)	0	0	0	0	1	1	1	1
11.9.4	lipid metabolism.lipid degradation.beta-oxidation	4 (1.69%)	0	0	0	0	1	1	1	1
20.2.1	stress.abiotic.heat	4 (1.69%)	1	2	0	0	0	0	0	1
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	4 (1.69%)	0	0	0	0	3	0	0	1
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	4 (1.69%)	0	0	0	4	0	0	0	0
29.4.1	protein.postranslational modification.kinase	4 (1.69%)	0	0	0	0	2	2	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	4 (1.69%)	0	0	0	0	2	2	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	4 (1.69%)	0	0	0	0	3	1	0	0
11.9.4.13	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA reductase	3 (1.27%)	0	0	0	0	1	0	1	1
17.1	hormone metabolism.abscisic acid	3 (1.27%)	0	0	1	0	1	1	0	0
17.1.1	hormone metabolism.abscisic acid.synthesis-degradation	3 (1.27%)	0	0	1	0	1	1	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	3 (1.27%)	0	0	0	0	1	1	0	1
27.3.99	RNA.regulation of transcription.unclassified	3 (1.27%)	0	2	0	0	1	0	0	0
28.1	DNA.synthesis/chromatin structure	3 (1.27%)	0	0	0	2	0	0	0	1
10.6	cell wall.degradation	2 (0.85%)	0	0	0	0	1	0	0	1
17.5.1	hormone metabolism.ethylene.synthesis-degradation	2 (0.85%)	0	0	0	2	0	0	0	0
20.2.4	stress.abiotic.touch/wounding	2 (0.85%)	0	0	0	0	2	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	2 (0.85%)	0	0	0	2	0	0	0	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	2 (0.85%)	0	0	1	0	0	1	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	2 (0.85%)	0	0	0	1	0	1	0	0
29.3	protein.targeting	2 (0.85%)	1	1	0	0	0	0	0	0
29.3.4	protein.targeting.secretory pathway	2 (0.85%)	1	1	0	0	0	0	0	0
29.3.4.3	protein.targeting.secretory pathway.vacuole	2 (0.85%)	1	1	0	0	0	0	0	0
29.5.11	protein.degradation.ubiquitin	2 (0.85%)	0	0	0	2	0	0	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	2 (0.85%)	0	0	0	2	0	0	0	0
30.2	signalling.receptor kinases	2 (0.85%)	0	1	0	0	0	1	0	0
30.2.17	signalling.receptor kinases.DUF 26	2 (0.85%)	0	1	0	0	0	1	0	0
30.3	signalling.calcium	2 (0.85%)	0	0	0	1	0	0	0	1
30.5	signalling.G-proteins	2 (0.85%)	0	0	1	0	0	0	0	1
31.1	cell.organisation	2 (0.85%)	1	0	0	1	0	0	0	0
31.3	cell.cycle	2 (0.85%)	0	0	0	0	1	1	0	0
31.5	cell.cell death	2 (0.85%)	1	1	0	0	0	0	0	0
31.5.1	cell.cell death.plants	2 (0.85%)	1	1	0	0	0	0	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.42%)	0	0	0	0	0	0	1	0
9.7	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	1 (0.42%)	0	0	0	0	0	0	1	0
10.1	cell wall.precursor synthesis	1 (0.42%)	0	0	1	0	0	0	0	0
10.1.5	cell wall.precursor synthesis.UXS	1 (0.42%)	0	0	1	0	0	0	0	0
10.5	cell wall.cell wall proteins	1 (0.42%)	0	0	0	0	1	0	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.42%)	0	0	0	0	0	0	0	1
10.7	cell wall.modification	1 (0.42%)	0	0	0	1	0	0	0	0
11.2	lipid metabolism.FA desaturation	1 (0.42%)	1	0	0	0	0	0	0	0
11.2.4	lipid metabolism.FA desaturation.omega 6 desaturase	1 (0.42%)	1	0	0	0	0	0	0	0
11.3	lipid metabolism.Phospholipid synthesis	1 (0.42%)	0	0	1	0	0	0	0	0
11.9.4.2	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH	1 (0.42%)	0	0	0	0	0	1	0	0
15	metal handling	1 (0.42%)	0	0	1	0	0	0	0	0
15.2	metal handling.binding, chelation and storage	1 (0.42%)	0	0	1	0	0	0	0	0
16.2	secondary metabolism.phenylpropanoids	1 (0.42%)	0	1	0	0	0	0	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	1 (0.42%)	0	1	0	0	0	0	0	0
16.2.1.6	secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT	1 (0.42%)	0	1	0	0	0	0	0	0
17.2	hormone metabolism.auxin	1 (0.42%)	0	1	0	0	0	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (0.42%)	0	1	0	0	0	0	0	0
17.5.1.1	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase	1 (0.42%)	0	0	0	1	0	0	0	0
20.1	stress.biotic	1 (0.42%)	0	0	1	0	0	0	0	0
26.13	misc.acid and other phosphatases	1 (0.42%)	0	0	0	0	0	1	0	0
26.28	misc.GDSL-motif lipase	1 (0.42%)	0	0	0	1	0	0	0	0
26.7	misc.oxidases - copper, flavone etc	1 (0.42%)	0	0	1	0	0	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.42%)	0	0	0	1	0	0	0	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.42%)	0	0	0	0	1	0	0	0
27.3.64	RNA.regulation of transcription.PHOR1	1 (0.42%)	0	0	0	1	0	0	0	0
28.2	DNA.repair	1 (0.42%)	1	0	0	0	0	0	0	0
28.99	DNA.unspecified	1 (0.42%)	0	0	0	0	0	0	0	1
29.2	protein.synthesis	1 (0.42%)	0	0	0	0	1	0	0	0
29.2.4	protein.synthesis.elongation	1 (0.42%)	0	0	0	0	1	0	0	0
29.5.3	protein.degradation.cysteine protease	1 (0.42%)	0	1	0	0	0	0	0	0
29.5.5	protein.degradation.serine protease	1 (0.42%)	0	0	1	0	0	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.42%)	0	0	0	0	1	0	0	0
34.12	transport.metal	1 (0.42%)	0	0	0	1	0	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.42%)	0	0	0	0	0	0	0	1
34.19	transport.Major Intrinsic Proteins	1 (0.42%)	0	0	0	0	0	1	0	0
34.19.2	transport.Major Intrinsic Proteins.TIP	1 (0.42%)	0	0	0	0	0	1	0	0
34.2	transport.sugars	1 (0.42%)	1	0	0	0	0	0	0	0
34.7	transport.phosphate	1 (0.42%)	0	0	0	0	1	0	0	0