PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_540
Name: CCA1 motif1 BS in CAB1
Description: A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene

#Associated genes: 41
#Associated MapMan terms: 41

Show species without binding site experiments

Click table-header(s) to enable sorting

MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	vvi
27	RNA	8 (19.51%)	0	0	0	0	6	1	1
27.3	RNA.regulation of transcription	8 (19.51%)	0	0	0	0	6	1	1
11	lipid metabolism	3 (7.32%)	1	0	0	0	1	0	1
29	protein	3 (7.32%)	1	1	0	0	0	0	1
1	PS	2 (4.88%)	0	0	0	1	0	1	0
10	cell wall	2 (4.88%)	0	0	0	0	0	1	1
11.8	lipid metabolism.exotics(steroids, squalene etc)	2 (4.88%)	0	0	0	0	1	0	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	2 (4.88%)	0	0	0	0	2	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	2 (4.88%)	0	0	0	0	2	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	2 (4.88%)	0	0	0	0	2	0	0
29.2.1.1.3.2.32	protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L32	2 (4.88%)	0	0	1	1	0	0	0
30	signalling	2 (4.88%)	0	0	0	0	0	1	1
30.5	signalling.G-proteins	2 (4.88%)	0	0	0	0	0	1	1
31	cell	2 (4.88%)	0	0	0	2	0	0	0
34	transport	2 (4.88%)	1	0	0	0	1	0	0
1.2	PS.photorespiration	1 (2.44%)	0	0	0	1	0	0	0
1.3	PS.calvin cycle	1 (2.44%)	0	0	0	0	0	1	0
1.3.6	PS.calvin cycle.aldolase	1 (2.44%)	0	0	0	0	0	1	0
10.2	cell wall.cellulose synthesis	1 (2.44%)	0	0	0	0	0	0	1
10.8	cell wall.pectin*esterases	1 (2.44%)	0	0	0	0	0	1	0
10.8.1	cell wall.pectin*esterases.PME	1 (2.44%)	0	0	0	0	0	1	0
11.3	lipid metabolism.Phospholipid synthesis	1 (2.44%)	1	0	0	0	0	0	0
13	amino acid metabolism	1 (2.44%)	0	1	0	0	0	0	0
13.2	amino acid metabolism.degradation	1 (2.44%)	0	1	0	0	0	0	0
13.2.3	amino acid metabolism.degradation.aspartate family	1 (2.44%)	0	1	0	0	0	0	0
13.2.3.4	amino acid metabolism.degradation.aspartate family.methionine	1 (2.44%)	0	1	0	0	0	0	0
20	stress	1 (2.44%)	0	0	0	0	1	0	0
20.2	stress.abiotic	1 (2.44%)	0	0	0	0	1	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	1 (2.44%)	0	0	0	0	0	0	1
27.3.99	RNA.regulation of transcription.unclassified	1 (2.44%)	0	0	0	0	0	1	0
29.1	protein.aa activation	1 (2.44%)	0	1	0	0	0	0	0
29.1.22	protein.aa activation.asparagine-tRNA ligase	1 (2.44%)	0	1	0	0	0	0	0
29.4	protein.postranslational modification	1 (2.44%)	0	0	0	0	0	0	1
29.5	protein.degradation	1 (2.44%)	1	0	0	0	0	0	0
29.5.11	protein.degradation.ubiquitin	1 (2.44%)	1	0	0	0	0	0	0
29.5.11.20	protein.degradation.ubiquitin.proteasom	1 (2.44%)	1	0	0	0	0	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	1 (2.44%)	0	0	0	0	0	1	0
31.1	cell.organisation	1 (2.44%)	0	0	0	1	0	0	0
31.4	cell.vesicle transport	1 (2.44%)	0	0	0	1	0	0	0
34.11	transport.NDP-sugars at the ER	1 (2.44%)	0	0	0	0	1	0	0
34.99	transport.misc	1 (2.44%)	1	0	0	0	0	0	0