PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_518
Name: SPHCOREZMC1
Description: Core of Sph element; Core motif of Sph element in maize C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response

#Associated genes: 238
#Associated MapMan terms: 107

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	73 (30.67%)	1	5	7	19	16	10	6	9
27.3	RNA.regulation of transcription	70 (29.41%)	1	5	5	19	16	9	6	9
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	29 (12.18%)	1	4	2	11	4	1	3	3
17	hormone metabolism	16 (6.72%)	3	0	2	4	3	3	1	0
10	cell wall	12 (5.04%)	0	0	0	10	1	1	0	0
29	protein	12 (5.04%)	0	3	0	1	2	4	1	1
28	DNA	11 (4.62%)	0	1	0	5	2	0	1	2
17.2	hormone metabolism.auxin	9 (3.78%)	1	0	1	4	1	1	1	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	8 (3.36%)	0	0	0	3	2	0	1	2
30	signalling	8 (3.36%)	0	1	0	4	2	1	0	0
33	development	8 (3.36%)	0	2	0	3	1	1	0	1
28.99	DNA.unspecified	7 (2.94%)	0	0	0	5	1	0	1	0
29.4	protein.postranslational modification	7 (2.94%)	0	0	0	1	1	4	0	1
34	transport	7 (2.94%)	1	2	1	1	1	1	0	0
26	misc	6 (2.52%)	0	0	1	2	1	0	1	1
30.2	signalling.receptor kinases	6 (2.52%)	0	1	0	3	2	0	0	0
34.19	transport.Major Intrinsic Proteins	6 (2.52%)	1	2	1	1	1	0	0	0
34.19.2	transport.Major Intrinsic Proteins.TIP	6 (2.52%)	1	2	1	1	1	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	5 (2.10%)	0	0	1	2	1	0	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	5 (2.10%)	0	1	0	2	2	0	0	0
31	cell	5 (2.10%)	0	0	0	4	1	0	0	0
33.99	development.unspecified	5 (2.10%)	0	2	0	2	1	0	0	0
10.7	cell wall.modification	4 (1.68%)	0	0	0	4	0	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	4 (1.68%)	0	0	0	2	1	0	1	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	4 (1.68%)	0	0	1	2	0	1	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	4 (1.68%)	0	0	0	2	1	1	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	4 (1.68%)	0	0	0	0	1	1	1	1
28.1	DNA.synthesis/chromatin structure	4 (1.68%)	0	1	0	0	1	0	0	2
31.1	cell.organisation	4 (1.68%)	0	0	0	3	1	0	0	0
13	amino acid metabolism	3 (1.26%)	1	0	0	0	1	1	0	0
13.1	amino acid metabolism.synthesis	3 (1.26%)	1	0	0	0	1	1	0	0
13.1.6	amino acid metabolism.synthesis.aromatic aa	3 (1.26%)	1	0	0	0	1	1	0	0
13.1.6.2	amino acid metabolism.synthesis.aromatic aa.phenylalanine and tyrosine	3 (1.26%)	1	0	0	0	1	1	0	0
15	metal handling	3 (1.26%)	0	0	0	0	1	2	0	0
17.5	hormone metabolism.ethylene	3 (1.26%)	0	0	0	0	1	2	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	3 (1.26%)	0	0	0	0	1	2	0	0
27.3.10	RNA.regulation of transcription.C2C2(Zn) YABBY family	3 (1.26%)	0	0	0	0	0	2	1	0
27.4	RNA.RNA binding	3 (1.26%)	0	0	2	0	0	1	0	0
33.1	development.storage proteins	3 (1.26%)	0	0	0	1	0	1	0	1
3	minor CHO metabolism	2 (0.84%)	0	0	0	0	0	1	0	1
10.1	cell wall.precursor synthesis	2 (0.84%)	0	0	0	0	1	1	0	0
10.1.2	cell wall.precursor synthesis.UGE	2 (0.84%)	0	0	0	0	1	1	0	0
10.5	cell wall.cell wall proteins	2 (0.84%)	0	0	0	2	0	0	0	0
10.5.4	cell wall.cell wall proteins.HRGP	2 (0.84%)	0	0	0	2	0	0	0	0
3.6	minor CHO metabolism.callose	2 (0.84%)	0	0	0	0	0	1	0	1
10.6	cell wall.degradation	2 (0.84%)	0	0	0	2	0	0	0	0
10.8	cell wall.pectin*esterases	2 (0.84%)	0	0	0	2	0	0	0	0
10.8.1	cell wall.pectin*esterases.PME	2 (0.84%)	0	0	0	2	0	0	0	0
16	secondary metabolism	2 (0.84%)	1	0	0	1	0	0	0	0
17.1	hormone metabolism.abscisic acid	2 (0.84%)	2	0	0	0	0	0	0	0
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	2 (0.84%)	2	0	0	0	0	0	0	0
26.3	misc.gluco-, galacto- and mannosidases	2 (0.84%)	0	0	0	1	0	0	1	0
26.5	misc.acyl transferases	2 (0.84%)	0	0	1	1	0	0	0	0
27.3.15	RNA.regulation of transcription.CCAAT box binding factor family, HAP3	2 (0.84%)	0	0	0	0	2	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	2 (0.84%)	0	0	1	0	0	0	0	1
27.3.29	RNA.regulation of transcription.TCP transcription factor family	2 (0.84%)	0	0	0	0	2	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	2 (0.84%)	0	0	0	0	1	1	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	2 (0.84%)	0	0	1	0	0	1	0	0
29.3	protein.targeting	2 (0.84%)	0	1	0	0	0	0	1	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	2 (0.84%)	0	0	0	0	2	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	2 (0.84%)	0	0	0	1	1	0	0	0
29.7	protein.glycosylation	2 (0.84%)	0	2	0	0	0	0	0	0
1	PS	1 (0.42%)	0	0	0	0	0	1	0	0
1.1	PS.lightreaction	1 (0.42%)	0	0	0	0	0	1	0	0
1.1.6	PS.lightreaction.NADH DH	1 (0.42%)	0	0	0	0	0	1	0	0
10.6.1	cell wall.degradation.cellulases and beta -1,4-glucanases	1 (0.42%)	0	0	0	1	0	0	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.42%)	0	0	0	1	0	0	0	0
15.2	metal handling.binding, chelation and storage	1 (0.42%)	0	0	0	0	0	1	0	0
16.2	secondary metabolism.phenylpropanoids	1 (0.42%)	0	0	0	1	0	0	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	1 (0.42%)	0	0	0	1	0	0	0	0
16.2.1.6	secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT	1 (0.42%)	0	0	0	1	0	0	0	0
16.5	secondary metabolism.sulfur-containing	1 (0.42%)	1	0	0	0	0	0	0	0
16.5.1	secondary metabolism.sulfur-containing.glucosinolates	1 (0.42%)	1	0	0	0	0	0	0	0
16.5.1.3	secondary metabolism.sulfur-containing.glucosinolates.degradation	1 (0.42%)	1	0	0	0	0	0	0	0
16.5.1.3.3	secondary metabolism.sulfur-containing.glucosinolates.degradation.nitrilase	1 (0.42%)	1	0	0	0	0	0	0	0
17.2.1	hormone metabolism.auxin.synthesis-degradation	1 (0.42%)	1	0	0	0	0	0	0	0
17.3	hormone metabolism.brassinosteroid	1 (0.42%)	0	0	0	0	1	0	0	0
17.3.2	hormone metabolism.brassinosteroid.signal transduction	1 (0.42%)	0	0	0	0	1	0	0	0
17.3.2.2	hormone metabolism.brassinosteroid.signal transduction.BZR	1 (0.42%)	0	0	0	0	1	0	0	0
17.6	hormone metabolism.gibberelin	1 (0.42%)	0	0	1	0	0	0	0	0
17.6.3	hormone metabolism.gibberelin.induced-regulated-responsive-activated	1 (0.42%)	0	0	1	0	0	0	0	0
20	stress	1 (0.42%)	0	0	0	0	0	0	0	1
20.2	stress.abiotic	1 (0.42%)	0	0	0	0	0	0	0	1
20.2.3	stress.abiotic.drought/salt	1 (0.42%)	0	0	0	0	0	0	0	1
26.22	misc.short chain dehydrogenase/reductase (SDR)	1 (0.42%)	0	0	0	0	0	0	0	1
26.28	misc.GDSL-motif lipase	1 (0.42%)	0	0	0	0	1	0	0	0
26.3.4	misc.gluco-, galacto- and mannosidases.endoglucanase	1 (0.42%)	0	0	0	1	0	0	0	0
27.3.17	RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family	1 (0.42%)	0	0	0	0	0	1	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.42%)	0	0	0	0	0	0	0	1
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.42%)	0	0	0	1	0	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	1 (0.42%)	0	1	0	0	0	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	1 (0.42%)	0	0	0	0	0	1	0	0
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	1 (0.42%)	0	0	0	0	1	0	0	0
27.3.99	RNA.regulation of transcription.unclassified	1 (0.42%)	0	0	0	0	1	0	0	0
29.2.1.2.2.34	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34	1 (0.42%)	0	0	0	0	1	0	0	0
29.3.1	protein.targeting.nucleus	1 (0.42%)	0	0	0	0	0	0	1	0
29.3.4	protein.targeting.secretory pathway	1 (0.42%)	0	1	0	0	0	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.42%)	0	1	0	0	0	0	0	0
29.4.1	protein.postranslational modification.kinase	1 (0.42%)	0	0	0	0	0	1	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	1 (0.42%)	0	0	0	0	0	1	0	0
29.5	protein.degradation	1 (0.42%)	0	0	0	0	1	0	0	0
29.5.1	protein.degradation.subtilases	1 (0.42%)	0	0	0	0	1	0	0	0
30.11	signalling.light	1 (0.42%)	0	0	0	0	0	1	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.42%)	0	0	0	1	0	0	0	0
30.5	signalling.G-proteins	1 (0.42%)	0	0	0	1	0	0	0	0
31.3	cell.cycle	1 (0.42%)	0	0	0	1	0	0	0	0
34.15	transport.potassium	1 (0.42%)	0	0	0	0	0	1	0	0