PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_504
Name: LFY
Description: Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins

#Associated genes: 282
#Associated MapMan terms: 118

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	37 (13.12%)	1	2	1	11	10	5	0	7
27.3	RNA.regulation of transcription	31 (10.99%)	0	2	0	11	9	2	0	7
29	protein	28 (9.93%)	0	0	1	5	8	3	0	11
29.4	protein.postranslational modification	13 (4.61%)	0	0	0	3	3	2	0	5
34	transport	11 (3.90%)	1	0	1	3	4	0	0	2
29.5	protein.degradation	10 (3.55%)	0	0	0	0	5	1	0	4
30	signalling	10 (3.55%)	0	0	2	0	2	2	2	2
16	secondary metabolism	9 (3.19%)	1	2	1	0	2	1	1	1
30.2	signalling.receptor kinases	9 (3.19%)	0	0	2	0	2	2	1	2
1	PS	8 (2.84%)	0	0	2	0	4	0	1	1
1.1	PS.lightreaction	8 (2.84%)	0	0	2	0	4	0	1	1
26	misc	8 (2.84%)	0	2	1	0	2	1	1	1
34.16	transport.ABC transporters and multidrug resistance systems	8 (2.84%)	0	0	1	2	3	0	0	2
16.10	secondary metabolism.simple phenols	7 (2.48%)	1	2	0	0	1	1	1	1
31	cell	7 (2.48%)	0	1	1	3	2	0	0	0
17	hormone metabolism	6 (2.13%)	0	0	1	1	2	0	0	2
28	DNA	6 (2.13%)	0	0	0	3	2	0	0	1
30.2.17	signalling.receptor kinases.DUF 26	6 (2.13%)	0	0	2	0	1	2	0	1
1.1.1	PS.lightreaction.photosystem II	5 (1.77%)	0	0	0	0	3	0	1	1
21	redox	5 (1.77%)	0	1	1	0	2	1	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	5 (1.77%)	0	0	0	2	1	0	0	2
29.3	protein.targeting	5 (1.77%)	0	0	1	2	0	0	0	2
29.3.1	protein.targeting.nucleus	5 (1.77%)	0	0	1	2	0	0	0	2
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	5 (1.77%)	2	1	0	1	1	0	0	0
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	4 (1.42%)	0	0	0	0	3	0	0	1
11	lipid metabolism	4 (1.42%)	0	0	0	1	1	1	0	1
11.10	lipid metabolism.glycolipid synthesis	4 (1.42%)	0	0	0	1	1	1	0	1
11.10.1	lipid metabolism.glycolipid synthesis.MGDG synthase	4 (1.42%)	0	0	0	1	1	1	0	1
20	stress	4 (1.42%)	0	0	1	1	1	1	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	4 (1.42%)	0	0	0	4	0	0	0	0
29.4.1	protein.postranslational modification.kinase	4 (1.42%)	0	0	0	2	0	0	0	2
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	4 (1.42%)	0	0	0	2	0	0	0	2
31.1	cell.organisation	4 (1.42%)	0	1	1	0	2	0	0	0
33	development	4 (1.42%)	0	0	0	1	1	1	0	1
17.2	hormone metabolism.auxin	3 (1.06%)	0	0	0	1	0	0	0	2
20.2	stress.abiotic	3 (1.06%)	0	0	1	1	0	1	0	0
21.6	redox.dismutases and catalases	3 (1.06%)	0	0	1	0	1	1	0	0
26.4	misc.beta 1,3 glucan hydrolases	3 (1.06%)	0	0	1	0	0	1	0	1
27.1	RNA.processing	3 (1.06%)	1	0	1	0	0	1	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	3 (1.06%)	0	1	0	2	0	0	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	3 (1.06%)	0	0	0	1	0	1	0	1
28.1	DNA.synthesis/chromatin structure	3 (1.06%)	0	0	0	0	2	0	0	1
28.99	DNA.unspecified	3 (1.06%)	0	0	0	3	0	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	3 (1.06%)	0	0	0	0	1	0	1	1
33.99	development.unspecified	3 (1.06%)	0	0	0	0	1	1	0	1
1.1.2	PS.lightreaction.photosystem I	2 (0.71%)	0	0	2	0	0	0	0	0
1.1.2.2	PS.lightreaction.photosystem I.PSI polypeptide subunits	2 (0.71%)	0	0	2	0	0	0	0	0
9	mitochondrial electron transport / ATP synthesis	2 (0.71%)	0	0	0	0	1	1	0	0
10	cell wall	2 (0.71%)	0	0	0	1	1	0	0	0
15	metal handling	2 (0.71%)	0	0	0	0	1	1	0	0
15.2	metal handling.binding, chelation and storage	2 (0.71%)	0	0	0	0	1	1	0	0
16.8	secondary metabolism.flavonoids	2 (0.71%)	0	0	1	0	1	0	0	0
16.8.3	secondary metabolism.flavonoids.dihydroflavonols	2 (0.71%)	0	0	1	0	1	0	0	0
16.8.3.1	secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase	2 (0.71%)	0	0	1	0	1	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	2 (0.71%)	0	0	0	1	0	0	0	1
17.5.1	hormone metabolism.ethylene.synthesis-degradation	2 (0.71%)	0	0	1	0	1	0	0	0
9.9	mitochondrial electron transport / ATP synthesis.F1-ATPase	2 (0.71%)	0	0	0	0	1	1	0	0
17.5	hormone metabolism.ethylene	2 (0.71%)	0	0	1	0	1	0	0	0
17.6	hormone metabolism.gibberelin	2 (0.71%)	0	0	1	0	1	0	0	0
17.6.1	hormone metabolism.gibberelin.synthesis-degradation	2 (0.71%)	0	0	1	0	1	0	0	0
17.6.1.11	hormone metabolism.gibberelin.synthesis-degradation.GA20 oxidase	2 (0.71%)	0	0	1	0	1	0	0	0
20.2.1	stress.abiotic.heat	2 (0.71%)	0	0	1	1	0	0	0	0
21.1	redox.thioredoxin	2 (0.71%)	0	1	0	0	1	0	0	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	2 (0.71%)	0	0	0	0	2	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	2 (0.71%)	0	0	0	0	1	0	0	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	2 (0.71%)	0	0	0	0	0	0	0	2
27.4	RNA.RNA binding	2 (0.71%)	0	0	0	0	1	1	0	0
29.2.1.1.1.2.20	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L20	2 (0.71%)	0	1	0	0	0	0	1	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	2 (0.71%)	0	0	0	2	0	0	0	0
29.5.3	protein.degradation.cysteine protease	2 (0.71%)	0	0	0	0	0	0	0	2
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	1 (0.35%)	0	0	0	0	0	0	1	0
1.1.30	PS.lightreaction.state transition	1 (0.35%)	0	0	0	0	1	0	0	0
10.5	cell wall.cell wall proteins	1 (0.35%)	0	0	0	1	0	0	0	0
10.5.1	cell wall.cell wall proteins.AGPs	1 (0.35%)	0	0	0	1	0	0	0	0
10.5.1.1	cell wall.cell wall proteins.AGPs.AGP	1 (0.35%)	0	0	0	1	0	0	0	0
10.7	cell wall.modification	1 (0.35%)	0	0	0	0	1	0	0	0
13	amino acid metabolism	1 (0.35%)	0	0	0	0	0	0	1	0
13.1	amino acid metabolism.synthesis	1 (0.35%)	0	0	0	0	0	0	1	0
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	1 (0.35%)	0	0	0	0	0	0	1	0
13.1.5.3	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine	1 (0.35%)	0	0	0	0	0	0	1	0
17.2.2	hormone metabolism.auxin.signal transduction	1 (0.35%)	0	0	0	0	0	0	0	1
17.4	hormone metabolism.cytokinin	1 (0.35%)	0	0	0	0	1	0	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	1 (0.35%)	0	0	0	0	1	0	0	0
18	Co-factor and vitamine metabolism	1 (0.35%)	0	0	0	0	1	0	0	0
20.1	stress.biotic	1 (0.35%)	0	0	0	0	1	0	0	0
20.2.99	stress.abiotic.unspecified	1 (0.35%)	0	0	0	0	0	1	0	0
26.1	misc.misc2	1 (0.35%)	0	1	0	0	0	0	0	0
26.12	misc.peroxidases	1 (0.35%)	0	0	0	0	0	0	1	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.35%)	0	0	0	0	1	0	0	0
26.24	misc.GCN5-related N-acetyltransferase	1 (0.35%)	0	0	0	0	1	0	0	0
26.6	misc.O-methyl transferases	1 (0.35%)	0	1	0	0	0	0	0	0
27.1.1	RNA.processing.splicing	1 (0.35%)	0	0	1	0	0	0	0	0
27.1.2	RNA.processing.RNA helicase	1 (0.35%)	0	0	0	0	0	1	0	0
27.2	RNA.transcription	1 (0.35%)	0	0	0	0	0	1	0	0
27.3.10	RNA.regulation of transcription.C2C2(Zn) YABBY family	1 (0.35%)	0	0	0	0	1	0	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	1 (0.35%)	0	0	0	0	0	1	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.35%)	0	0	0	1	0	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.35%)	0	0	0	1	0	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	1 (0.35%)	0	1	0	0	0	0	0	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.35%)	0	0	0	0	0	0	0	1
27.3.52	RNA.regulation of transcription.Global transcription factor group	1 (0.35%)	0	0	0	0	1	0	0	0
27.3.64	RNA.regulation of transcription.PHOR1	1 (0.35%)	0	0	0	0	1	0	0	0
28.1.1	DNA.synthesis/chromatin structure.retrotransposon/transposase	1 (0.35%)	0	0	0	0	1	0	0	0
28.1.1.4	DNA.synthesis/chromatin structure.retrotransposon/transposase.hat-like transposase	1 (0.35%)	0	0	0	0	1	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.35%)	0	0	0	0	0	0	0	1
29.2.1.2.2.57	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A	1 (0.35%)	0	0	0	0	1	0	0	0
29.5.1	protein.degradation.subtilases	1 (0.35%)	0	0	0	0	0	0	0	1
29.5.11	protein.degradation.ubiquitin	1 (0.35%)	0	0	0	0	1	0	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.35%)	0	0	0	0	1	0	0	0
30.3	signalling.calcium	1 (0.35%)	0	0	0	0	0	0	1	0
31.2	cell.division	1 (0.35%)	0	0	0	1	0	0	0	0
31.3	cell.cycle	1 (0.35%)	0	0	0	1	0	0	0	0
31.3.1	cell.cycle.peptidylprolyl isomerase	1 (0.35%)	0	0	0	1	0	0	0	0
31.4	cell.vesicle transport	1 (0.35%)	0	0	0	1	0	0	0	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.35%)	0	0	0	1	0	0	0	0
34.7	transport.phosphate	1 (0.35%)	0	0	0	0	1	0	0	0
34.98	transport.membrane system unknown	1 (0.35%)	1	0	0	0	0	0	0	0
34.99	transport.misc	1 (0.35%)	0	0	0	1	0	0	0	0