PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_485
Name: NRRBNEXTA
Description: NRR (negative regulatory region) in promoter region of Brassica napus extA extensin gene; Removal of this region leads to expression in all tissues within the stem internode, petiole and root

#Associated genes: 361
#Associated MapMan terms: 154

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	56 (15.51%)	3	2	5	13	17	6	5	5
27.3	RNA.regulation of transcription	50 (13.85%)	3	2	5	12	14	5	4	5
29	protein	42 (11.63%)	3	3	2	5	12	6	3	8
30	signalling	22 (6.09%)	3	1	3	4	5	1	2	3
33	development	22 (6.09%)	3	0	3	8	2	1	1	4
33.99	development.unspecified	20 (5.54%)	3	0	3	7	1	1	1	4
29.4	protein.postranslational modification	18 (4.99%)	0	1	1	3	6	4	1	2
20	stress	15 (4.16%)	2	0	2	1	7	1	1	1
34	transport	15 (4.16%)	0	0	1	3	6	1	2	2
20.2	stress.abiotic	12 (3.32%)	2	0	1	1	5	1	1	1
29.5	protein.degradation	12 (3.32%)	2	0	1	1	2	1	1	4
30.2	signalling.receptor kinases	12 (3.32%)	1	1	1	2	3	1	1	2
28	DNA	9 (2.49%)	1	0	1	0	1	3	2	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	8 (2.22%)	0	1	0	2	2	1	1	1
17	hormone metabolism	7 (1.94%)	0	1	0	1	0	2	0	3
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	7 (1.94%)	1	1	2	1	2	0	0	0
28.1	DNA.synthesis/chromatin structure	7 (1.94%)	1	0	0	0	1	2	2	1
11	lipid metabolism	6 (1.66%)	0	1	0	0	4	0	0	1
20.2.1	stress.abiotic.heat	6 (1.66%)	1	0	1	0	3	0	0	1
26	misc	6 (1.66%)	1	0	1	1	2	1	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	6 (1.66%)	1	0	1	0	0	1	2	1
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	6 (1.66%)	0	1	0	1	3	0	0	1
29.5.5	protein.degradation.serine protease	6 (1.66%)	1	0	1	1	1	1	0	1
29.7	protein.glycosylation	6 (1.66%)	1	1	0	1	1	1	0	1
31	cell	6 (1.66%)	0	1	1	3	0	1	0	0
29.3	protein.targeting	5 (1.39%)	0	1	0	0	3	0	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	5 (1.39%)	0	0	0	4	0	0	0	1
1	PS	4 (1.11%)	0	0	0	0	1	1	2	0
1.1	PS.lightreaction	4 (1.11%)	0	0	0	0	1	1	2	0
10	cell wall	4 (1.11%)	0	0	0	3	1	0	0	0
15	metal handling	4 (1.11%)	2	0	1	0	0	0	1	0
20.2.3	stress.abiotic.drought/salt	4 (1.11%)	1	0	0	0	2	0	1	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	4 (1.11%)	0	0	1	0	1	1	0	1
28.1.3	DNA.synthesis/chromatin structure.histone	4 (1.11%)	1	0	0	0	1	1	1	0
29.3.1	protein.targeting.nucleus	4 (1.11%)	0	0	0	0	3	0	0	1
29.4.1	protein.postranslational modification.kinase	4 (1.11%)	0	0	0	1	2	0	1	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	4 (1.11%)	0	0	0	1	2	0	1	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	4 (1.11%)	0	0	1	0	1	1	0	1
30.11	signalling.light	4 (1.11%)	0	0	2	2	0	0	0	0
34.19	transport.Major Intrinsic Proteins	4 (1.11%)	0	0	1	2	0	0	1	0
34.19.3	transport.Major Intrinsic Proteins.NIP	4 (1.11%)	0	0	1	2	0	0	1	0
11.3	lipid metabolism.Phospholipid synthesis	3 (0.83%)	0	0	0	0	2	0	0	1
12	N-metabolism	3 (0.83%)	0	2	0	0	0	0	0	1
12.2	N-metabolism.ammonia metabolism	3 (0.83%)	0	2	0	0	0	0	0	1
12.2.1	N-metabolism.ammonia metabolism.glutamate synthase	3 (0.83%)	0	2	0	0	0	0	0	1
15.1	metal handling.acquisition	3 (0.83%)	1	0	1	0	0	0	1	0
20.1	stress.biotic	3 (0.83%)	0	0	1	0	2	0	0	0
20.1.7	stress.biotic.PR-proteins	3 (0.83%)	0	0	1	0	2	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	3 (0.83%)	0	0	0	0	1	1	1	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	3 (0.83%)	0	0	0	0	2	0	0	1
27.3.99	RNA.regulation of transcription.unclassified	3 (0.83%)	0	0	1	1	1	0	0	0
27.4	RNA.RNA binding	3 (0.83%)	0	0	0	1	2	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	3 (0.83%)	0	0	1	0	1	0	0	1
30.3	signalling.calcium	3 (0.83%)	1	0	0	0	2	0	0	0
31.3	cell.cycle	3 (0.83%)	0	0	0	2	0	1	0	0
34.99	transport.misc	3 (0.83%)	0	0	0	0	3	0	0	0
3	minor CHO metabolism	2 (0.55%)	0	0	0	0	0	1	0	1
10.2	cell wall.cellulose synthesis	2 (0.55%)	0	0	0	2	0	0	0	0
10.2.1	cell wall.cellulose synthesis.cellulose synthase	2 (0.55%)	0	0	0	2	0	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	2 (0.55%)	0	0	0	0	2	0	0	0
11.1.7	lipid metabolism.FA synthesis and FA elongation.ACP thioesterase	2 (0.55%)	0	0	0	0	2	0	0	0
13	amino acid metabolism	2 (0.55%)	0	0	0	1	0	0	1	0
16	secondary metabolism	2 (0.55%)	0	0	1	1	0	0	0	0
17.3	hormone metabolism.brassinosteroid	2 (0.55%)	0	0	0	0	0	0	0	2
17.3.1	hormone metabolism.brassinosteroid.synthesis-degradation	2 (0.55%)	0	0	0	0	0	0	0	2
17.3.1.2	hormone metabolism.brassinosteroid.synthesis-degradation.sterols	2 (0.55%)	0	0	0	0	0	0	0	2
17.5	hormone metabolism.ethylene	2 (0.55%)	0	1	0	1	0	0	0	0
17.6	hormone metabolism.gibberelin	2 (0.55%)	0	0	0	0	0	1	0	1
17.6.3	hormone metabolism.gibberelin.induced-regulated-responsive-activated	2 (0.55%)	0	0	0	0	0	1	0	1
21	redox	2 (0.55%)	0	0	0	2	0	0	0	0
21.4	redox.glutaredoxins	2 (0.55%)	0	0	0	2	0	0	0	0
26.28	misc.GDSL-motif lipase	2 (0.55%)	1	0	0	0	0	1	0	0
27.1	RNA.processing	2 (0.55%)	0	0	0	0	1	1	0	0
27.1.1	RNA.processing.splicing	2 (0.55%)	0	0	0	0	1	1	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	2 (0.55%)	0	0	0	0	1	0	1	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	2 (0.55%)	0	0	0	2	0	0	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	2 (0.55%)	0	0	0	0	0	2	0	0
27.3.5	RNA.regulation of transcription.ARR	2 (0.55%)	0	0	0	1	0	0	0	1
27.3.57	RNA.regulation of transcription.JUMONJI family	2 (0.55%)	0	0	0	2	0	0	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	2 (0.55%)	0	0	0	2	0	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	2 (0.55%)	0	0	0	0	1	1	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	2 (0.55%)	0	0	0	0	1	1	0	0
29.5.1	protein.degradation.subtilases	2 (0.55%)	0	0	0	0	0	0	0	2
29.5.11	protein.degradation.ubiquitin	2 (0.55%)	0	0	0	0	1	0	1	0
3.6	minor CHO metabolism.callose	2 (0.55%)	0	0	0	0	0	1	0	1
31.1	cell.organisation	2 (0.55%)	0	0	1	1	0	0	0	0
34.1	transport.p- and v-ATPases	2 (0.55%)	0	0	0	0	0	1	0	1
34.1.1	transport.p- and v-ATPases.H+-transporting two-sector ATPase	2 (0.55%)	0	0	0	0	0	1	0	1
34.16	transport.ABC transporters and multidrug resistance systems	2 (0.55%)	0	0	0	0	1	0	0	1
34.7	transport.phosphate	2 (0.55%)	0	0	0	1	1	0	0	0
1.1.1	PS.lightreaction.photosystem II	1 (0.28%)	0	0	0	0	0	0	1	0
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	1 (0.28%)	0	0	0	0	0	0	1	0
1.1.3	PS.lightreaction.cytochrome b6/f	1 (0.28%)	0	0	0	0	0	1	0	0
1.1.3.1	PS.lightreaction.cytochrome b6/f.iron sulfur subunit	1 (0.28%)	0	0	0	0	0	1	0	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	1 (0.28%)	0	0	0	0	1	0	0	0
1.1.5	PS.lightreaction.other electron carrier (ox/red)	1 (0.28%)	0	0	0	0	0	0	1	0
1.1.5.3	PS.lightreaction.other electron carrier (ox/red).ferredoxin reductase	1 (0.28%)	0	0	0	0	0	0	1	0
10.6	cell wall.degradation	1 (0.28%)	0	0	0	0	1	0	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.28%)	0	0	0	0	1	0	0	0
10.7	cell wall.modification	1 (0.28%)	0	0	0	1	0	0	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.28%)	0	1	0	0	0	0	0	0
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	1 (0.28%)	0	1	0	0	0	0	0	0
13.1	amino acid metabolism.synthesis	1 (0.28%)	0	0	0	0	0	0	1	0
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	1 (0.28%)	0	0	0	0	0	0	1	0
13.1.5.3	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine	1 (0.28%)	0	0	0	0	0	0	1	0
13.2	amino acid metabolism.degradation	1 (0.28%)	0	0	0	1	0	0	0	0
13.2.3	amino acid metabolism.degradation.aspartate family	1 (0.28%)	0	0	0	1	0	0	0	0
13.2.3.2	amino acid metabolism.degradation.aspartate family.threonine	1 (0.28%)	0	0	0	1	0	0	0	0
15.2	metal handling.binding, chelation and storage	1 (0.28%)	1	0	0	0	0	0	0	0
16.1	secondary metabolism.isoprenoids	1 (0.28%)	0	0	0	1	0	0	0	0
16.1.4	secondary metabolism.isoprenoids.carotenoids	1 (0.28%)	0	0	0	1	0	0	0	0
16.10	secondary metabolism.simple phenols	1 (0.28%)	0	0	1	0	0	0	0	0
17.1	hormone metabolism.abscisic acid	1 (0.28%)	0	0	0	0	0	1	0	0
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	1 (0.28%)	0	0	0	0	0	1	0	0
17.3.1.2.2	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.SMT2	1 (0.28%)	0	0	0	0	0	0	0	1
17.3.1.2.8	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.DWF1	1 (0.28%)	0	0	0	0	0	0	0	1
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.28%)	0	0	0	1	0	0	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	1 (0.28%)	0	1	0	0	0	0	0	0
20.2.99	stress.abiotic.unspecified	1 (0.28%)	0	0	0	1	0	0	0	0
23	nucleotide metabolism	1 (0.28%)	0	0	0	0	0	0	0	1
23.2	nucleotide metabolism.degradation	1 (0.28%)	0	0	0	0	0	0	0	1
23.2.2	nucleotide metabolism.degradation.purine	1 (0.28%)	0	0	0	0	0	0	0	1
23.3	nucleotide metabolism.salvage	1 (0.28%)	0	0	0	0	0	0	0	1
26.10	misc.cytochrome P450	1 (0.28%)	0	0	1	0	0	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.28%)	0	0	0	0	1	0	0	0
26.30	misc. other Ferredoxins and Rieske domain	1 (0.28%)	0	0	0	0	1	0	0	0
26.7	misc.oxidases - copper, flavone etc	1 (0.28%)	0	0	0	1	0	0	0	0
27.2	RNA.transcription	1 (0.28%)	0	0	0	0	0	0	1	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.28%)	0	0	0	1	0	0	0	0
27.3.27	RNA.regulation of transcription.NAC domain transcription factor family	1 (0.28%)	1	0	0	0	0	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.28%)	0	0	0	0	1	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.28%)	0	0	0	0	1	0	0	0
27.3.34	RNA.regulation of transcription.Orphan family	1 (0.28%)	0	0	0	0	0	0	0	1
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	1 (0.28%)	0	0	0	1	0	0	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	1 (0.28%)	0	0	0	0	1	0	0	0
28.1.3.1	DNA.synthesis/chromatin structure.histone.H1	1 (0.28%)	1	0	0	0	0	0	0	0
28.2	DNA.repair	1 (0.28%)	0	0	1	0	0	0	0	0
28.99	DNA.unspecified	1 (0.28%)	0	0	0	0	0	1	0	0
29.2.1.1.1.2.14	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L14	1 (0.28%)	0	0	1	0	0	0	0	0
29.3.4	protein.targeting.secretory pathway	1 (0.28%)	0	1	0	0	0	0	0	0
29.3.4.1	protein.targeting.secretory pathway.ER	1 (0.28%)	0	1	0	0	0	0	0	0
29.5.7	protein.degradation.metalloprotease	1 (0.28%)	0	0	0	0	0	0	0	1
29.8	protein.assembly and cofactor ligation	1 (0.28%)	0	0	0	0	0	0	1	0
30.2.99	signalling.receptor kinases.misc	1 (0.28%)	1	0	0	0	0	0	0	0
30.4	signalling.phosphinositides	1 (0.28%)	0	0	0	0	0	0	1	0
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	1 (0.28%)	0	0	0	0	0	0	1	0
30.5	signalling.G-proteins	1 (0.28%)	0	0	0	0	0	0	0	1
30.8	signalling.misc	1 (0.28%)	1	0	0	0	0	0	0	0
31.2	cell.division	1 (0.28%)	0	1	0	0	0	0	0	0
33.1	development.storage proteins	1 (0.28%)	0	0	0	0	1	0	0	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.28%)	0	0	0	1	0	0	0	0
34.1.1.2	transport.p- and v-ATPases.H+-transporting two-sector ATPase.subunit C	1 (0.28%)	0	0	0	0	0	1	0	0
34.12	transport.metal	1 (0.28%)	0	0	0	0	1	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	1 (0.28%)	0	0	0	0	0	0	1	0