PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_462
Name: TE2F2NTPCNA
Description: te2f-2 found in the promoter of tobacco PCNA gene; Located between -84 and -77; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissue

#Associated genes: 399
#Associated MapMan terms: 129

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	59 (14.79%)	2	5	4	16	15	6	6	5
27.3	RNA.regulation of transcription	59 (14.79%)	2	5	4	16	15	6	6	5
28	DNA	47 (11.78%)	5	2	4	9	14	6	4	3
28.1	DNA.synthesis/chromatin structure	31 (7.77%)	4	2	1	5	9	4	4	2
31	cell	27 (6.77%)	4	2	1	3	8	4	2	3
29	protein	24 (6.02%)	2	2	0	6	3	7	1	3
31.1	cell.organisation	16 (4.01%)	4	1	1	2	5	1	1	1
26	misc	15 (3.76%)	2	4	0	2	1	3	2	1
28.2	DNA.repair	13 (3.26%)	1	0	1	3	5	2	0	1
17	hormone metabolism	12 (3.01%)	0	1	1	2	4	2	0	2
20	stress	12 (3.01%)	0	2	4	1	1	2	1	1
29.4	protein.postranslational modification	12 (3.01%)	1	1	0	3	2	3	1	1
30	signalling	12 (3.01%)	0	0	1	5	1	2	2	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	11 (2.76%)	1	3	0	2	3	0	1	1
33	development	11 (2.76%)	1	0	2	1	2	3	1	1
33.99	development.unspecified	11 (2.76%)	1	0	2	1	2	3	1	1
34	transport	10 (2.51%)	0	0	1	2	2	2	1	2
26.13	misc.acid and other phosphatases	9 (2.26%)	1	2	0	2	0	3	1	0
20.2	stress.abiotic	8 (2.01%)	0	1	3	1	1	1	1	0
23	nucleotide metabolism	8 (2.01%)	0	0	0	0	2	1	2	3
27.3.18	RNA.regulation of transcription.E2F/DP transcription factor family	8 (2.01%)	1	0	0	5	2	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	8 (2.01%)	0	0	0	5	3	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	8 (2.01%)	0	0	0	3	3	1	1	0
30.2	signalling.receptor kinases	8 (2.01%)	0	0	1	3	1	0	2	1
17.6	hormone metabolism.gibberelin	7 (1.75%)	0	0	1	2	2	1	0	1
17.6.1	hormone metabolism.gibberelin.synthesis-degradation	7 (1.75%)	0	0	1	2	2	1	0	1
17.6.1.1	hormone metabolism.gibberelin.synthesis-degradation.copalyl diphosphate synthase	7 (1.75%)	0	0	1	2	2	1	0	1
20.2.1	stress.abiotic.heat	7 (1.75%)	0	1	2	1	1	1	1	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	7 (1.75%)	0	0	0	3	3	1	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	7 (1.75%)	0	0	0	3	3	1	0	0
29.2	protein.synthesis	7 (1.75%)	1	1	0	2	1	1	0	1
29.2.2	protein.synthesis.ribosome biogenesis	7 (1.75%)	1	1	0	2	1	1	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	7 (1.75%)	0	0	2	2	2	1	0	0
31.3	cell.cycle	7 (1.75%)	0	0	0	1	2	3	0	1
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	6 (1.50%)	0	1	1	0	2	0	1	1
27.3.99	RNA.regulation of transcription.unclassified	6 (1.50%)	0	1	0	0	3	1	1	0
11	lipid metabolism	5 (1.25%)	0	0	0	2	1	1	0	1
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	5 (1.25%)	0	0	2	0	1	1	1	0
29.4.1	protein.postranslational modification.kinase	5 (1.25%)	0	0	0	3	1	1	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	5 (1.25%)	0	0	0	3	1	1	0	0
1	PS	4 (1.00%)	0	0	1	0	0	1	1	1
1.1	PS.lightreaction	4 (1.00%)	0	0	1	0	0	1	1	1
1.1.3	PS.lightreaction.cytochrome b6/f	4 (1.00%)	0	0	1	0	0	1	1	1
11.8	lipid metabolism.exotics(steroids, squalene etc)	4 (1.00%)	0	0	0	2	1	1	0	0
11.8.2	lipid metabolism.exotics (steroids, squalene etc).methylsterol monooxygenase	4 (1.00%)	0	0	0	2	1	1	0	0
16	secondary metabolism	4 (1.00%)	0	0	1	2	0	1	0	0
16.1	secondary metabolism.isoprenoids	4 (1.00%)	0	0	1	2	0	1	0	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	4 (1.00%)	0	0	1	2	0	1	0	0
17.2	hormone metabolism.auxin	4 (1.00%)	0	0	0	0	2	1	0	1
20.1	stress.biotic	4 (1.00%)	0	1	1	0	0	1	0	1
20.1.3	stress.biotic.signalling	4 (1.00%)	0	1	1	0	0	1	0	1
20.1.3.1	stress.biotic.signalling.MLO-like	4 (1.00%)	0	1	1	0	0	1	0	1
23.5	nucleotide metabolism.deoxynucleotide metabolism	4 (1.00%)	0	0	0	0	0	0	2	2
29.2.2.3	protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications	4 (1.00%)	1	0	0	0	1	1	0	1
29.2.2.3.3	protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.methylotransferases	4 (1.00%)	1	0	0	0	1	1	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	4 (1.00%)	0	0	0	1	1	0	1	1
30.3	signalling.calcium	4 (1.00%)	0	0	0	2	0	2	0	0
3	minor CHO metabolism	3 (0.75%)	0	0	1	0	2	0	0	0
13	amino acid metabolism	3 (0.75%)	0	0	0	0	3	0	0	0
13.1	amino acid metabolism.synthesis	3 (0.75%)	0	0	0	0	3	0	0	0
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	3 (0.75%)	0	0	0	0	3	0	0	0
13.1.5.3	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine	3 (0.75%)	0	0	0	0	3	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	3 (0.75%)	0	0	0	0	1	1	0	1
23.5.5	nucleotide metabolism.deoxynucleotide metabolism.dUTP diphosphatase	3 (0.75%)	0	0	0	0	0	0	1	2
26.2	misc.UDP glucosyl and glucoronyl transferases	3 (0.75%)	0	2	0	0	0	0	0	1
26.7	misc.oxidases - copper, flavone etc	3 (0.75%)	1	0	0	0	1	0	1	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	3 (0.75%)	0	0	0	0	2	0	1	0
27.3.16	RNA.regulation of transcription.CCAAT box binding factor family, HAP5	3 (0.75%)	0	0	0	0	1	1	1	0
27.3.62	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	3 (0.75%)	0	0	0	2	0	1	0	0
28.99	DNA.unspecified	3 (0.75%)	0	0	2	1	0	0	0	0
29.3	protein.targeting	3 (0.75%)	0	0	0	1	0	1	0	1
29.5.11.4.4	protein.degradation.ubiquitin.E3.APC	3 (0.75%)	0	0	0	0	1	1	0	1
31.2	cell.division	3 (0.75%)	0	1	0	0	1	0	0	1
34.12	transport.metal	3 (0.75%)	0	0	0	0	1	1	0	1
9	mitochondrial electron transport / ATP synthesis	2 (0.50%)	1	0	0	1	0	0	0	0
23.1	nucleotide metabolism.synthesis	2 (0.50%)	0	0	0	0	1	1	0	0
23.1.2	nucleotide metabolism.synthesis.purine	2 (0.50%)	0	0	0	0	1	1	0	0
23.1.2.5	nucleotide metabolism.synthesis.purine.AIR synthase	2 (0.50%)	0	0	0	0	1	1	0	0
23.3	nucleotide metabolism.salvage	2 (0.50%)	0	0	0	0	1	0	0	1
29.1	protein.aa activation	2 (0.50%)	0	0	0	0	0	2	0	0
29.3.4	protein.targeting.secretory pathway	2 (0.50%)	0	0	0	0	0	1	0	1
29.3.4.99	protein.targeting.secretory pathway.unspecified	2 (0.50%)	0	0	0	0	0	1	0	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	2 (0.50%)	0	0	0	0	1	0	1	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	2 (0.50%)	0	0	0	2	0	0	0	0
30.2.99	signalling.receptor kinases.misc	2 (0.50%)	0	0	1	0	0	0	1	0
34.16	transport.ABC transporters and multidrug resistance systems	2 (0.50%)	0	0	0	2	0	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	2 (0.50%)	0	0	0	0	1	0	1	0
1.1.3.3	PS.lightreaction.cytochrome b6/f.cytochrome b6 (CYB6)	1 (0.25%)	0	0	0	0	0	0	1	0
10	cell wall	1 (0.25%)	0	0	1	0	0	0	0	0
10.5	cell wall.cell wall proteins	1 (0.25%)	0	0	1	0	0	0	0	0
10.5.5	cell wall.cell wall proteins.RGP	1 (0.25%)	0	0	1	0	0	0	0	0
11.10	lipid metabolism.glycolipid synthesis	1 (0.25%)	0	0	0	0	0	0	0	1
11.10.2	lipid metabolism.glycolipid synthesis.DGDG synthase	1 (0.25%)	0	0	0	0	0	0	0	1
15	metal handling	1 (0.25%)	0	0	0	0	1	0	0	0
15.2	metal handling.binding, chelation and storage	1 (0.25%)	0	0	0	0	1	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	1 (0.25%)	0	0	0	0	1	0	0	0
17.5	hormone metabolism.ethylene	1 (0.25%)	0	1	0	0	0	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.25%)	0	1	0	0	0	0	0	0
21	redox	1 (0.25%)	1	0	0	0	0	0	0	0
21.4	redox.glutaredoxins	1 (0.25%)	1	0	0	0	0	0	0	0
23.3.1	nucleotide metabolism.salvage.phosphoribosyltransferases	1 (0.25%)	0	0	0	0	1	0	0	0
23.3.1.3	nucleotide metabolism.salvage.phosphoribosyltransferases.upp	1 (0.25%)	0	0	0	0	1	0	0	0
23.3.3	nucleotide metabolism.salvage.NUDIX hydrolases	1 (0.25%)	0	0	0	0	0	0	0	1
23.5.4	nucleotide metabolism.deoxynucleotide metabolism.ribonucleoside-diphosphate reductase	1 (0.25%)	0	0	0	0	0	0	1	0
27.3.17	RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family	1 (0.25%)	0	0	0	0	0	1	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.25%)	0	0	0	0	0	0	0	1
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.25%)	0	0	1	0	0	0	0	0
27.3.52	RNA.regulation of transcription.Global transcription factor group	1 (0.25%)	0	0	0	1	0	0	0	0
27.3.57	RNA.regulation of transcription.JUMONJI family	1 (0.25%)	0	0	0	0	0	0	1	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	1 (0.25%)	0	0	0	0	0	0	0	1
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.25%)	0	0	0	0	0	0	0	1
29.1.22	protein.aa activation.asparagine-tRNA ligase	1 (0.25%)	0	0	0	0	0	1	0	0
29.3.1	protein.targeting.nucleus	1 (0.25%)	0	0	0	1	0	0	0	0
3.1	minor CHO metabolism.raffinose family	1 (0.25%)	0	0	0	0	1	0	0	0
3.1.2	minor CHO metabolism.raffinose family.raffinose synthases	1 (0.25%)	0	0	0	0	1	0	0	0
3.1.2.1	minor CHO metabolism.raffinose family.raffinose synthases.known	1 (0.25%)	0	0	0	0	1	0	0	0
3.1.2.2	minor CHO metabolism.raffinose family.raffinose synthases.putative	1 (0.25%)	0	0	0	0	1	0	0	0
3.2	minor CHO metabolism.trehalose	1 (0.25%)	0	0	0	0	1	0	0	0
3.2.2	minor CHO metabolism.trehalose.TPP	1 (0.25%)	0	0	0	0	1	0	0	0
3.4	minor CHO metabolism.myo-inositol	1 (0.25%)	0	0	1	0	0	0	0	0
3.4.5	minor CHO metabolism.myo-inositol.inositol phosphatase	1 (0.25%)	0	0	1	0	0	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.25%)	0	0	1	0	0	0	0	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	1 (0.25%)	0	0	0	1	0	0	0	0
9.5	mitochondrial electron transport / ATP synthesis.cytochrome c reductase	1 (0.25%)	1	0	0	0	0	0	0	0
31.4	cell.vesicle transport	1 (0.25%)	0	0	0	0	0	0	1	0
34.15	transport.potassium	1 (0.25%)	0	0	1	0	0	0	0	0
34.5	transport.ammonium	1 (0.25%)	0	0	0	0	0	1	0	0
34.99	transport.misc	1 (0.25%)	0	0	0	0	0	0	0	1
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	1 (0.25%)	0	0	0	1	0	0	0	0