PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_449
Name: AGL25;SVP
Description: FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis

#Associated genes: 11
#Associated GO terms: 108

Biological Process
Molecular Function
Cellular Component

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Molecular Function (back to top)

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GO	Description	#Associated genes	egr	gma	ptr	ppe	sly	stu	vvi
GO:0003677	DNA binding	9 (81.82%)	0	2	2	1	1	2	1
GO:0005488	binding	9 (81.82%)	0	2	2	1	1	2	1
GO:1901363	heterocyclic compound binding	9 (81.82%)	0	2	2	1	1	2	1
GO:0003676	nucleic acid binding	9 (81.82%)	0	2	2	1	1	2	1
GO:0097159	organic cyclic compound binding	9 (81.82%)	0	2	2	1	1	2	1
GO:0001071	nucleic acid binding transcription factor activity	7 (63.64%)	0	2	2	1	1	1	0
GO:0003700	sequence-specific DNA binding transcription factor activity	7 (63.64%)	0	2	2	1	1	1	0
GO:0005515	protein binding	6 (54.55%)	0	2	1	1	1	1	0
GO:0046983	protein dimerization activity	6 (54.55%)	0	2	1	1	1	1	0
GO:0043565	sequence-specific DNA binding	3 (27.27%)	0	2	0	1	0	0	0
GO:0003824	catalytic activity	1 (9.09%)	1	0	0	0	0	0	0
GO:0008168	methyltransferase activity	1 (9.09%)	1	0	0	0	0	0	0
GO:0016740	transferase activity	1 (9.09%)	1	0	0	0	0	0	0
GO:0016741	transferase activity, transferring one-carbon groups	1 (9.09%)	1	0	0	0	0	0	0

Cellular Component (back to top)

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GO	Description	#Associated genes	egr	gma	ptr	ppe	sly	stu
GO:0005623	cell	7 (63.64%)	1	2	1	1	1	1
GO:0044464	cell part	7 (63.64%)	1	2	1	1	1	1
GO:0005622	intracellular	7 (63.64%)	1	2	1	1	1	1
GO:0043231	intracellular membrane-bounded organelle	7 (63.64%)	1	2	1	1	1	1
GO:0043229	intracellular organelle	7 (63.64%)	1	2	1	1	1	1
GO:0044424	intracellular part	7 (63.64%)	1	2	1	1	1	1
GO:0043227	membrane-bounded organelle	7 (63.64%)	1	2	1	1	1	1
GO:0005634	nucleus	7 (63.64%)	1	2	1	1	1	1
GO:0043226	organelle	7 (63.64%)	1	2	1	1	1	1
GO:0005794	Golgi apparatus	1 (9.09%)	1	0	0	0	0	0
GO:0030054	cell junction	1 (9.09%)	1	0	0	0	0	0
GO:0005911	cell-cell junction	1 (9.09%)	1	0	0	0	0	0
GO:0005737	cytoplasm	1 (9.09%)	1	0	0	0	0	0
GO:0044444	cytoplasmic part	1 (9.09%)	1	0	0	0	0	0
GO:0005768	endosome	1 (9.09%)	1	0	0	0	0	0
GO:0044446	intracellular organelle part	1 (9.09%)	1	0	0	0	0	0
GO:0016020	membrane	1 (9.09%)	1	0	0	0	0	0
GO:0031090	organelle membrane	1 (9.09%)	1	0	0	0	0	0
GO:0044422	organelle part	1 (9.09%)	1	0	0	0	0	0
GO:0009506	plasmodesma	1 (9.09%)	1	0	0	0	0	0
GO:0055044	symplast	1 (9.09%)	1	0	0	0	0	0
GO:0005802	trans-Golgi network	1 (9.09%)	1	0	0	0	0	0
GO:0005774	vacuolar membrane	1 (9.09%)	1	0	0	0	0	0
GO:0044437	vacuolar part	1 (9.09%)	1	0	0	0	0	0
GO:0005773	vacuole	1 (9.09%)	1	0	0	0	0	0

Biological Process (back to top)

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GO	Description	#Associated genes	gma	ptr	ppe	sly	stu	vvi
GO:0032774	RNA biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0016070	RNA metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0019438	aromatic compound biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0065007	biological regulation	9 (81.82%)	2	2	1	1	2	1
GO:0009058	biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0006725	cellular aromatic compound metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0044249	cellular biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0034645	cellular macromolecule biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0044260	cellular macromolecule metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0044237	cellular metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0044271	cellular nitrogen compound biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0034641	cellular nitrogen compound metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0009987	cellular process	9 (81.82%)	2	2	1	1	2	1
GO:0010467	gene expression	9 (81.82%)	2	2	1	1	2	1
GO:0018130	heterocycle biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0046483	heterocycle metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0009059	macromolecule biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0043170	macromolecule metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0008152	metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0006807	nitrogen compound metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0090304	nucleic acid metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0034654	nucleobase-containing compound biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0006139	nucleobase-containing compound metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:1901362	organic cyclic compound biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:1901360	organic cyclic compound metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:1901576	organic substance biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0071704	organic substance metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0044238	primary metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:2001141	regulation of RNA biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0051252	regulation of RNA metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0050789	regulation of biological process	9 (81.82%)	2	2	1	1	2	1
GO:0009889	regulation of biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0031326	regulation of cellular biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:2000112	regulation of cellular macromolecule biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0031323	regulation of cellular metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0050794	regulation of cellular process	9 (81.82%)	2	2	1	1	2	1
GO:0010468	regulation of gene expression	9 (81.82%)	2	2	1	1	2	1
GO:0010556	regulation of macromolecule biosynthetic process	9 (81.82%)	2	2	1	1	2	1
GO:0060255	regulation of macromolecule metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0019222	regulation of metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0051171	regulation of nitrogen compound metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0019219	regulation of nucleobase-containing compound metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0080090	regulation of primary metabolic process	9 (81.82%)	2	2	1	1	2	1
GO:0006355	regulation of transcription, DNA-dependent	9 (81.82%)	2	2	1	1	2	1
GO:0006351	transcription, DNA-templated	9 (81.82%)	2	2	1	1	2	1
GO:0048856	anatomical structure development	3 (27.27%)	2	1	0	0	0	0
GO:0032502	developmental process	3 (27.27%)	2	1	0	0	0	0
GO:0048507	meristem development	3 (27.27%)	2	1	0	0	0	0
GO:0007275	multicellular organismal development	3 (27.27%)	2	1	0	0	0	0
GO:0032501	multicellular organismal process	3 (27.27%)	2	1	0	0	0	0
GO:0048513	organ development	3 (27.27%)	2	1	0	0	0	0
GO:0040034	regulation of development, heterochronic	3 (27.27%)	2	1	0	0	0	0
GO:0050793	regulation of developmental process	3 (27.27%)	2	1	0	0	0	0
GO:0048509	regulation of meristem development	3 (27.27%)	2	1	0	0	0	0
GO:2000026	regulation of multicellular organismal development	3 (27.27%)	2	1	0	0	0	0
GO:0051239	regulation of multicellular organismal process	3 (27.27%)	2	1	0	0	0	0
GO:0048506	regulation of timing of meristematic phase transition	3 (27.27%)	2	1	0	0	0	0
GO:0048510	regulation of timing of transition from vegetative to reproductive phase	3 (27.27%)	2	1	0	0	0	0
GO:0009628	response to abiotic stimulus	3 (27.27%)	2	1	0	0	0	0
GO:0009409	response to cold	3 (27.27%)	2	1	0	0	0	0
GO:0050896	response to stimulus	3 (27.27%)	2	1	0	0	0	0
GO:0006950	response to stress	3 (27.27%)	2	1	0	0	0	0
GO:0009266	response to temperature stimulus	3 (27.27%)	2	1	0	0	0	0
GO:0044707	single-multicellular organism process	3 (27.27%)	2	1	0	0	0	0
GO:0044767	single-organism developmental process	3 (27.27%)	2	1	0	0	0	0
GO:0044699	single-organism process	3 (27.27%)	2	1	0	0	0	0
GO:0048731	system development	3 (27.27%)	2	1	0	0	0	0
GO:0009888	tissue development	3 (27.27%)	2	1	0	0	0	0
GO:0010048	vernalization response	3 (27.27%)	2	1	0	0	0	0