Gene Ontology terms associated with a binding site

Binding site
Motif_445
Name
PDF2;ATML1
Description
Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis. Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein
#Associated genes
24
#Associated GO terms
331
 
Biological Process
Molecular Function
Cellular Component






Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell11 (45.83%)1003051100
GO:0044464cell part11 (45.83%)1003051100
GO:0005622intracellular11 (45.83%)1003051100
GO:0044424intracellular part11 (45.83%)1003051100
GO:0043231intracellular membrane-bounded organelle9 (37.50%)1002041100
GO:0043229intracellular organelle9 (37.50%)1002041100
GO:0043227membrane-bounded organelle9 (37.50%)1002041100
GO:0043226organelle9 (37.50%)1002041100
GO:0005634nucleus7 (29.17%)1002030100
GO:0005737cytoplasm6 (25.00%)0002021100
GO:0071944cell periphery4 (16.67%)0002010100
GO:0005576extracellular region4 (16.67%)1100200000
GO:0016020membrane4 (16.67%)0002010100
GO:0005886plasma membrane4 (16.67%)0002010100
GO:0045177apical part of cell2 (8.33%)0001010000
GO:0016324apical plasma membrane2 (8.33%)0001010000
GO:0044444cytoplasmic part2 (8.33%)0000011000
GO:0044446intracellular organelle part2 (8.33%)0000010100
GO:0044425membrane part2 (8.33%)0001010000
GO:0044428nuclear part2 (8.33%)0000010100
GO:0044422organelle part2 (8.33%)0000010100
GO:0044459plasma membrane part2 (8.33%)0001010000
GO:0005773vacuole2 (8.33%)0000011000
GO:0016602CCAAT-binding factor complex1 (4.17%)0000010000
GO:0042995cell projection1 (4.17%)0001000000
GO:0044427chromosomal part1 (4.17%)0000000100
GO:0005694chromosome1 (4.17%)0000000100
GO:0000781chromosome, telomeric region1 (4.17%)0000000100
GO:0012505endomembrane system1 (4.17%)0000000100
GO:0031975envelope1 (4.17%)0000000100
GO:0043232intracellular non-membrane-bounded organelle1 (4.17%)0000000100
GO:0032991macromolecular complex1 (4.17%)0000010000
GO:0043228non-membrane-bounded organelle1 (4.17%)0000000100
GO:0005635nuclear envelope1 (4.17%)0000000100
GO:0031965nuclear membrane1 (4.17%)0000000100
GO:0044798nuclear transcription factor complex1 (4.17%)0000010000
GO:0031967organelle envelope1 (4.17%)0000000100
GO:0031090organelle membrane1 (4.17%)0000000100
GO:0090406pollen tube1 (4.17%)0001000000
GO:0043234protein complex1 (4.17%)0000010000
GO:0005667transcription factor complex1 (4.17%)0000010000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0008152metabolic process13 (54.17%)0003072100
GO:0044237cellular metabolic process10 (41.67%)0003060100
GO:0009987cellular process10 (41.67%)0003060100
GO:0071704organic substance metabolic process10 (41.67%)0003060100
GO:0044238primary metabolic process10 (41.67%)0003060100
GO:0044699single-organism process10 (41.67%)1002042100
GO:0044710single-organism metabolic process8 (33.33%)0001042100
GO:0044260cellular macromolecule metabolic process6 (25.00%)0002030100
GO:0043170macromolecule metabolic process6 (25.00%)0002030100
GO:0044763single-organism cellular process6 (25.00%)0002030100
GO:0065007biological regulation5 (20.83%)1002010100
GO:0009058biosynthetic process5 (20.83%)0001030100
GO:0044249cellular biosynthetic process5 (20.83%)0001030100
GO:1901576organic substance biosynthetic process5 (20.83%)0001030100
GO:0006796phosphate-containing compound metabolic process5 (20.83%)0002030000
GO:0006793phosphorus metabolic process5 (20.83%)0002030000
GO:0050789regulation of biological process5 (20.83%)1002010100
GO:0050896response to stimulus5 (20.83%)0002020100
GO:0006950response to stress5 (20.83%)0002020100
GO:0044255cellular lipid metabolic process4 (16.67%)0001030000
GO:0051716cellular response to stimulus4 (16.67%)0001020100
GO:0006629lipid metabolic process4 (16.67%)0001030000
GO:0050794regulation of cellular process4 (16.67%)0002010100
GO:0009733response to auxin4 (16.67%)0001020100
GO:0042221response to chemical4 (16.67%)0001020100
GO:0009719response to endogenous stimulus4 (16.67%)0001020100
GO:0009723response to ethylene4 (16.67%)0001020100
GO:0009725response to hormone4 (16.67%)0001020100
GO:0009753response to jasmonic acid4 (16.67%)0001020100
GO:0033993response to lipid4 (16.67%)0001020100
GO:0014070response to organic cyclic compound4 (16.67%)0001020100
GO:0010033response to organic substance4 (16.67%)0001020100
GO:1901700response to oxygen-containing compound4 (16.67%)0001020100
GO:0009751response to salicylic acid4 (16.67%)0001020100
GO:0032774RNA biosynthetic process3 (12.50%)0001010100
GO:0016070RNA metabolic process3 (12.50%)0001010100
GO:0048856anatomical structure development3 (12.50%)1001010000
GO:0019438aromatic compound biosynthetic process3 (12.50%)0001010100
GO:0006725cellular aromatic compound metabolic process3 (12.50%)0001010100
GO:0016043cellular component organization3 (12.50%)0001010100
GO:0071840cellular component organization or biogenesis3 (12.50%)0001010100
GO:0034645cellular macromolecule biosynthetic process3 (12.50%)0001010100
GO:0044271cellular nitrogen compound biosynthetic process3 (12.50%)0001010100
GO:0034641cellular nitrogen compound metabolic process3 (12.50%)0001010100
GO:0044267cellular protein metabolic process3 (12.50%)0001020000
GO:0006464cellular protein modification process3 (12.50%)0001020000
GO:0006952defense response3 (12.50%)0001020000
GO:0048589developmental growth3 (12.50%)1001010000
GO:0032502developmental process3 (12.50%)1001010000
GO:0010467gene expression3 (12.50%)0001010100
GO:0040007growth3 (12.50%)1001010000
GO:0018130heterocycle biosynthetic process3 (12.50%)0001010100
GO:0046483heterocycle metabolic process3 (12.50%)0001010100
GO:0009059macromolecule biosynthetic process3 (12.50%)0001010100
GO:0043412macromolecule modification3 (12.50%)0001020000
GO:0007275multicellular organismal development3 (12.50%)1001010000
GO:0032501multicellular organismal process3 (12.50%)1001010000
GO:0006807nitrogen compound metabolic process3 (12.50%)0001010100
GO:0090304nucleic acid metabolic process3 (12.50%)0001010100
GO:0034654nucleobase-containing compound biosynthetic process3 (12.50%)0001010100
GO:0006139nucleobase-containing compound metabolic process3 (12.50%)0001010100
GO:0048513organ development3 (12.50%)1001010000
GO:1901362organic cyclic compound biosynthetic process3 (12.50%)0001010100
GO:1901360organic cyclic compound metabolic process3 (12.50%)0001010100
GO:0055114oxidation-reduction process3 (12.50%)0000012000
GO:0019538protein metabolic process3 (12.50%)0001020000
GO:0036211protein modification process3 (12.50%)0001020000
GO:2001141regulation of RNA biosynthetic process3 (12.50%)0001010100
GO:0051252regulation of RNA metabolic process3 (12.50%)0001010100
GO:0009889regulation of biosynthetic process3 (12.50%)0001010100
GO:0031326regulation of cellular biosynthetic process3 (12.50%)0001010100
GO:2000112regulation of cellular macromolecule biosynthetic process3 (12.50%)0001010100
GO:0031323regulation of cellular metabolic process3 (12.50%)0001010100
GO:0010468regulation of gene expression3 (12.50%)0001010100
GO:0010556regulation of macromolecule biosynthetic process3 (12.50%)0001010100
GO:0060255regulation of macromolecule metabolic process3 (12.50%)0001010100
GO:0019222regulation of metabolic process3 (12.50%)0001010100
GO:0051171regulation of nitrogen compound metabolic process3 (12.50%)0001010100
GO:0019219regulation of nucleobase-containing compound metabolic process3 (12.50%)0001010100
GO:0080090regulation of primary metabolic process3 (12.50%)0001010100
GO:0006355regulation of transcription, DNA-dependent3 (12.50%)0001010100
GO:0009739response to gibberellin stimulus3 (12.50%)0000020100
GO:0044707single-multicellular organism process3 (12.50%)1001010000
GO:0044767single-organism developmental process3 (12.50%)1001010000
GO:0048731system development3 (12.50%)1001010000
GO:0009888tissue development3 (12.50%)1001010000
GO:0006351transcription, DNA-templated3 (12.50%)0001010100
GO:0009653anatomical structure morphogenesis2 (8.33%)0001010000
GO:0046394carboxylic acid biosynthetic process2 (8.33%)0000020000
GO:0019752carboxylic acid metabolic process2 (8.33%)0000020000
GO:0007154cell communication2 (8.33%)0001000100
GO:0008219cell death2 (8.33%)0000020000
GO:0048468cell development2 (8.33%)0001010000
GO:0030154cell differentiation2 (8.33%)0001010000
GO:0016049cell growth2 (8.33%)0001010000
GO:0048469cell maturation2 (8.33%)0001010000
GO:0000902cell morphogenesis2 (8.33%)0001010000
GO:0000904cell morphogenesis involved in differentiation2 (8.33%)0001010000
GO:0009932cell tip growth2 (8.33%)0001010000
GO:0032989cellular component morphogenesis2 (8.33%)0001010000
GO:0048869cellular developmental process2 (8.33%)0001010000
GO:0033554cellular response to stress2 (8.33%)0000020000
GO:0016265death2 (8.33%)0000020000
GO:0048588developmental cell growth2 (8.33%)0001010000
GO:0060560developmental growth involved in morphogenesis2 (8.33%)0001010000
GO:0021700developmental maturation2 (8.33%)0001010000
GO:0009913epidermal cell differentiation2 (8.33%)0001010000
GO:0008544epidermis development2 (8.33%)0001010000
GO:0030855epithelial cell differentiation2 (8.33%)0001010000
GO:0060429epithelium development2 (8.33%)0001010000
GO:0006633fatty acid biosynthetic process2 (8.33%)0000020000
GO:0006631fatty acid metabolic process2 (8.33%)0000020000
GO:0046486glycerolipid metabolic process2 (8.33%)0001010000
GO:0006650glycerophospholipid metabolic process2 (8.33%)0001010000
GO:0034050host programmed cell death induced by symbiont2 (8.33%)0000020000
GO:0006955immune response2 (8.33%)0000020000
GO:0002376immune system process2 (8.33%)0000020000
GO:0045087innate immune response2 (8.33%)0000020000
GO:0008610lipid biosynthetic process2 (8.33%)0000020000
GO:0072330monocarboxylic acid biosynthetic process2 (8.33%)0000020000
GO:0032787monocarboxylic acid metabolic process2 (8.33%)0000020000
GO:0051704multi-organism process2 (8.33%)0000020000
GO:0016053organic acid biosynthetic process2 (8.33%)0000020000
GO:0006082organic acid metabolic process2 (8.33%)0000020000
GO:0019637organophosphate metabolic process2 (8.33%)0001010000
GO:0043436oxoacid metabolic process2 (8.33%)0000020000
GO:0046488phosphatidylinositol metabolic process2 (8.33%)0001010000
GO:0006644phospholipid metabolic process2 (8.33%)0001010000
GO:0016310phosphorylation2 (8.33%)0000020000
GO:0009626plant-type hypersensitive response2 (8.33%)0000020000
GO:0012501programmed cell death2 (8.33%)0000020000
GO:0006468protein phosphorylation2 (8.33%)0000020000
GO:0009628response to abiotic stimulus2 (8.33%)0001000100
GO:0009737response to abscisic acid2 (8.33%)0001000100
GO:0097305response to alcohol2 (8.33%)0001000100
GO:0009617response to bacterium2 (8.33%)0000020000
GO:0009607response to biotic stimulus2 (8.33%)0000020000
GO:0046686response to cadmium ion2 (8.33%)0001000100
GO:0010035response to inorganic substance2 (8.33%)0001000100
GO:0010038response to metal ion2 (8.33%)0001000100
GO:0006970response to osmotic stress2 (8.33%)0001000100
GO:0051707response to other organism2 (8.33%)0000020000
GO:0009651response to salt stress2 (8.33%)0001000100
GO:0048364root development2 (8.33%)0001010000
GO:0010053root epidermal cell differentiation2 (8.33%)0001010000
GO:0080147root hair cell development2 (8.33%)0001010000
GO:0048765root hair cell differentiation2 (8.33%)0001010000
GO:0048768root hair cell tip growth2 (8.33%)0001010000
GO:0048767root hair elongation2 (8.33%)0001010000
GO:0010015root morphogenesis2 (8.33%)0001010000
GO:0022622root system development2 (8.33%)0001010000
GO:0007165signal transduction2 (8.33%)0001000100
GO:0023052signaling2 (8.33%)0001000100
GO:0044700single organism signaling2 (8.33%)0001000100
GO:0044711single-organism biosynthetic process2 (8.33%)0000020000
GO:0043588skin development2 (8.33%)0001010000
GO:0044283small molecule biosynthetic process2 (8.33%)0000020000
GO:0044281small molecule metabolic process2 (8.33%)0000020000
GO:0010054trichoblast differentiation2 (8.33%)0001010000
GO:0048764trichoblast maturation2 (8.33%)0001010000
GO:0009826unidimensional cell growth2 (8.33%)0001010000
GO:0042761very long-chain fatty acid biosynthetic process2 (8.33%)0000020000
GO:0000038very long-chain fatty acid metabolic process2 (8.33%)0000020000
GO:0006259DNA metabolic process1 (4.17%)0000000100
GO:0000279M phase1 (4.17%)0000000100
GO:0051322anaphase1 (4.17%)0000000100
GO:0060249anatomical structure homeostasis1 (4.17%)0000000100
GO:0007049cell cycle1 (4.17%)0000000100
GO:0022403cell cycle phase1 (4.17%)0000000100
GO:0022402cell cycle process1 (4.17%)0000000100
GO:0048610cellular process involved in reproduction1 (4.17%)0000000100
GO:0070887cellular response to chemical stimulus1 (4.17%)0000000100
GO:0071495cellular response to endogenous stimulus1 (4.17%)0000000100
GO:0071369cellular response to ethylene stimulus1 (4.17%)0000000100
GO:0032870cellular response to hormone stimulus1 (4.17%)0000000100
GO:0071310cellular response to organic substance1 (4.17%)0000000100
GO:0051276chromosome organization1 (4.17%)0000000100
GO:0072583clathrin-mediated endocytosis1 (4.17%)0001000000
GO:0016311dephosphorylation1 (4.17%)0001000000
GO:0006897endocytosis1 (4.17%)0001000000
GO:0051234establishment of localization1 (4.17%)0001000000
GO:0009873ethylene mediated signaling pathway1 (4.17%)0000000100
GO:0042592homeostatic process1 (4.17%)0000000100
GO:0009755hormone-mediated signaling pathway1 (4.17%)0000000100
GO:0035556intracellular signal transduction1 (4.17%)0001000000
GO:0051179localization1 (4.17%)0001000000
GO:0007133meiotic anaphase I1 (4.17%)0000000100
GO:0048507meristem development1 (4.17%)1000000000
GO:0035266meristem growth1 (4.17%)1000000000
GO:0010073meristem maintenance1 (4.17%)1000000000
GO:0048519negative regulation of biological process1 (4.17%)0001000000
GO:0031348negative regulation of defense response1 (4.17%)0001000000
GO:0048585negative regulation of response to stimulus1 (4.17%)0001000000
GO:0006996organelle organization1 (4.17%)0000000100
GO:0000160phosphorelay signal transduction system1 (4.17%)0000000100
GO:0006470protein dephosphorylation1 (4.17%)0001000000
GO:0006898receptor-mediated endocytosis1 (4.17%)0001000000
GO:0051052regulation of DNA metabolic process1 (4.17%)0000000100
GO:0065008regulation of biological quality1 (4.17%)0000000100
GO:0051128regulation of cellular component organization1 (4.17%)0000000100
GO:0033044regulation of chromosome organization1 (4.17%)0000000100
GO:0031347regulation of defense response1 (4.17%)0001000000
GO:0048638regulation of developmental growth1 (4.17%)1000000000
GO:0050793regulation of developmental process1 (4.17%)1000000000
GO:0040008regulation of growth1 (4.17%)1000000000
GO:0032844regulation of homeostatic process1 (4.17%)0000000100
GO:0048509regulation of meristem development1 (4.17%)1000000000
GO:0010075regulation of meristem growth1 (4.17%)1000000000
GO:2000026regulation of multicellular organismal development1 (4.17%)1000000000
GO:0051239regulation of multicellular organismal process1 (4.17%)1000000000
GO:0033043regulation of organelle organization1 (4.17%)0000000100
GO:0048583regulation of response to stimulus1 (4.17%)0001000000
GO:0080134regulation of response to stress1 (4.17%)0001000000
GO:0032204regulation of telomere maintenance1 (4.17%)0000000100
GO:0000003reproduction1 (4.17%)0000000100
GO:0080167response to karrikin1 (4.17%)0001000000
GO:0009415response to water1 (4.17%)0001000000
GO:0009414response to water deprivation1 (4.17%)0001000000
GO:0000723telomere maintenance1 (4.17%)0000000100
GO:0032200telomere organization1 (4.17%)0000000100
GO:0006810transport1 (4.17%)0001000000
GO:0016192vesicle-mediated transport1 (4.17%)0001000000

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding14 (58.33%)0102073100
GO:0003824catalytic activity8 (33.33%)0002042000
GO:1901363heterocyclic compound binding8 (33.33%)0001060100
GO:0097159organic cyclic compound binding8 (33.33%)0001060100
GO:0005515protein binding8 (33.33%)0101041100
GO:0043167ion binding6 (25.00%)0100032000
GO:0016740transferase activity6 (25.00%)0001032000
GO:0003677DNA binding5 (20.83%)0001030100
GO:0003676nucleic acid binding5 (20.83%)0001030100
GO:0003682chromatin binding4 (16.67%)0001020100
GO:0016301kinase activity4 (16.67%)0001030000
GO:0016773phosphotransferase activity, alcohol group as acceptor4 (16.67%)0001030000
GO:0016772transferase activity, transferring phosphorus-containing groups4 (16.67%)0001030000
GO:0043168anion binding3 (12.50%)0000030000
GO:0043169cation binding3 (12.50%)0100002000
GO:0046872metal ion binding3 (12.50%)0100002000
GO:1901265nucleoside phosphate binding3 (12.50%)0000030000
GO:0000166nucleotide binding3 (12.50%)0000030000
GO:0016491oxidoreductase activity3 (12.50%)0000012000
GO:0036094small molecule binding3 (12.50%)0000030000
GO:0046914transition metal ion binding3 (12.50%)0100002000
GO:0008270zinc ion binding3 (12.50%)0100002000
GO:00163081-phosphatidylinositol-4-phosphate 5-kinase activity2 (8.33%)0001010000
GO:0005524ATP binding2 (8.33%)0000020000
GO:0030554adenyl nucleotide binding2 (8.33%)0000020000
GO:0032559adenyl ribonucleotide binding2 (8.33%)0000020000
GO:0097367carbohydrate derivative binding2 (8.33%)0000020000
GO:0031072heat shock protein binding2 (8.33%)0000011000
GO:0001882nucleoside binding2 (8.33%)0000020000
GO:0016307phosphatidylinositol phosphate kinase activity2 (8.33%)0001010000
GO:0004672protein kinase activity2 (8.33%)0000020000
GO:0004674protein serine/threonine kinase activity2 (8.33%)0000020000
GO:0001883purine nucleoside binding2 (8.33%)0000020000
GO:0017076purine nucleotide binding2 (8.33%)0000020000
GO:0032550purine ribonucleoside binding2 (8.33%)0000020000
GO:0035639purine ribonucleoside triphosphate binding2 (8.33%)0000020000
GO:0032555purine ribonucleotide binding2 (8.33%)0000020000
GO:0032549ribonucleoside binding2 (8.33%)0000020000
GO:0032553ribonucleotide binding2 (8.33%)0000020000
GO:0016746transferase activity, transferring acyl groups2 (8.33%)0000002000
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups2 (8.33%)0000002000
GO:0008301DNA binding, bending1 (4.17%)0000000100
GO:0033549MAP kinase phosphatase activity1 (4.17%)0001000000
GO:0033550MAP kinase tyrosine phosphatase activity1 (4.17%)0001000000
GO:0004499N,N-dimethylaniline monooxygenase activity1 (4.17%)0000010000
GO:0050661NADP binding1 (4.17%)0000010000
GO:0050662coenzyme binding1 (4.17%)0000010000
GO:0048037cofactor binding1 (4.17%)0000010000
GO:0003690double-stranded DNA binding1 (4.17%)0000000100
GO:0003691double-stranded telomeric DNA binding1 (4.17%)0000000100
GO:0050660flavin adenine dinucleotide binding1 (4.17%)0000010000
GO:0016787hydrolase activity1 (4.17%)0001000000
GO:0016788hydrolase activity, acting on ester bonds1 (4.17%)0001000000
GO:0042802identical protein binding1 (4.17%)0000000100
GO:0004497monooxygenase activity1 (4.17%)0000010000
GO:0001071nucleic acid binding transcription factor activity1 (4.17%)0000010000
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1 (4.17%)0000010000
GO:0016709oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1 (4.17%)0000010000
GO:0016791phosphatase activity1 (4.17%)0001000000
GO:0004721phosphoprotein phosphatase activity1 (4.17%)0001000000
GO:0042578phosphoric ester hydrolase activity1 (4.17%)0001000000
GO:0046983protein dimerization activity1 (4.17%)0000000100
GO:0042803protein homodimerization activity1 (4.17%)0000000100
GO:0004725protein tyrosine phosphatase activity1 (4.17%)0001000000
GO:0043565sequence-specific DNA binding1 (4.17%)0000000100
GO:0003700sequence-specific DNA binding transcription factor activity1 (4.17%)0000010000
GO:0043566structure-specific DNA binding1 (4.17%)0000000100
GO:0042162telomeric DNA binding1 (4.17%)0000000100