Gene Ontology terms associated with a binding site

Binding site
Motif_442
Name
GT2OSPHYA
Description
GT-2 (a rice nuclear protein) binding site in a rice phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements;The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter
#Associated genes
12
#Associated GO terms
159
 
Biological Process
Molecular Function
Cellular Component






Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0016020membrane2 (16.67%)0100010000
GO:0005623cell1 (8.33%)0100000000
GO:0044464cell part1 (8.33%)0100000000
GO:0071944cell periphery1 (8.33%)0100000000
GO:0005576extracellular region1 (8.33%)0000001000
GO:0016021integral to membrane1 (8.33%)0100000000
GO:0031224intrinsic to membrane1 (8.33%)0100000000
GO:0044425membrane part1 (8.33%)0100000000
GO:0005886plasma membrane1 (8.33%)0100000000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0009987cellular process4 (33.33%)0100201000
GO:0044699single-organism process3 (25.00%)0100200000
GO:0048856anatomical structure development2 (16.67%)0000200000
GO:0048466androecium development2 (16.67%)0000200000
GO:0048440carpel development2 (16.67%)0000200000
GO:0044260cellular macromolecule metabolic process2 (16.67%)0000200000
GO:0044237cellular metabolic process2 (16.67%)0000200000
GO:0044267cellular protein metabolic process2 (16.67%)0000200000
GO:0006464cellular protein modification process2 (16.67%)0000200000
GO:0032502developmental process2 (16.67%)0000200000
GO:0003006developmental process involved in reproduction2 (16.67%)0000200000
GO:0048437floral organ development2 (16.67%)0000200000
GO:0048438floral whorl development2 (16.67%)0000200000
GO:0009908flower development2 (16.67%)0000200000
GO:0048467gynoecium development2 (16.67%)0000200000
GO:0043170macromolecule metabolic process2 (16.67%)0000200000
GO:0043412macromolecule modification2 (16.67%)0000200000
GO:0008152metabolic process2 (16.67%)0000200000
GO:0007275multicellular organismal development2 (16.67%)0000200000
GO:0032501multicellular organismal process2 (16.67%)0000200000
GO:0048513organ development2 (16.67%)0000200000
GO:0071704organic substance metabolic process2 (16.67%)0000200000
GO:0006796phosphate-containing compound metabolic process2 (16.67%)0000200000
GO:0006793phosphorus metabolic process2 (16.67%)0000200000
GO:0016310phosphorylation2 (16.67%)0000200000
GO:0048827phyllome development2 (16.67%)0000200000
GO:0009791post-embryonic development2 (16.67%)0000200000
GO:0048569post-embryonic organ development2 (16.67%)0000200000
GO:0044238primary metabolic process2 (16.67%)0000200000
GO:0019538protein metabolic process2 (16.67%)0000200000
GO:0036211protein modification process2 (16.67%)0000200000
GO:0006468protein phosphorylation2 (16.67%)0000200000
GO:0000003reproduction2 (16.67%)0000200000
GO:0022414reproductive process2 (16.67%)0000200000
GO:0048608reproductive structure development2 (16.67%)0000200000
GO:0061458reproductive system development2 (16.67%)0000200000
GO:0050896response to stimulus2 (16.67%)0100001000
GO:0048367shoot system development2 (16.67%)0000200000
GO:0044702single organism reproductive process2 (16.67%)0000200000
GO:0044707single-multicellular organism process2 (16.67%)0000200000
GO:0044767single-organism developmental process2 (16.67%)0000200000
GO:0048443stamen development2 (16.67%)0000200000
GO:0048731system development2 (16.67%)0000200000
GO:0010228vegetative to reproductive phase transition of meristem2 (16.67%)0000200000
GO:0006865amino acid transport1 (8.33%)0100000000
GO:0006820anion transport1 (8.33%)0100000000
GO:0009734auxin mediated signaling pathway1 (8.33%)0100000000
GO:0065007biological regulation1 (8.33%)0100000000
GO:0046942carboxylic acid transport1 (8.33%)0100000000
GO:0007154cell communication1 (8.33%)0100000000
GO:0071555cell wall organization1 (8.33%)0000001000
GO:0071554cell wall organization or biogenesis1 (8.33%)0000001000
GO:0016043cellular component organization1 (8.33%)0000001000
GO:0071840cellular component organization or biogenesis1 (8.33%)0000001000
GO:0071365cellular response to auxin stimulus1 (8.33%)0100000000
GO:0070887cellular response to chemical stimulus1 (8.33%)0100000000
GO:0071495cellular response to endogenous stimulus1 (8.33%)0100000000
GO:0032870cellular response to hormone stimulus1 (8.33%)0100000000
GO:0071310cellular response to organic substance1 (8.33%)0100000000
GO:0051716cellular response to stimulus1 (8.33%)0100000000
GO:0051234establishment of localization1 (8.33%)0100000000
GO:0045229external encapsulating structure organization1 (8.33%)0000001000
GO:0009755hormone-mediated signaling pathway1 (8.33%)0100000000
GO:0006811ion transport1 (8.33%)0100000000
GO:0051179localization1 (8.33%)0100000000
GO:0071705nitrogen compound transport1 (8.33%)0100000000
GO:0015849organic acid transport1 (8.33%)0100000000
GO:0015711organic anion transport1 (8.33%)0100000000
GO:0071702organic substance transport1 (8.33%)0100000000
GO:0009664plant-type cell wall organization1 (8.33%)0000001000
GO:0071669plant-type cell wall organization or biogenesis1 (8.33%)0000001000
GO:0050789regulation of biological process1 (8.33%)0100000000
GO:0050794regulation of cellular process1 (8.33%)0100000000
GO:0009628response to abiotic stimulus1 (8.33%)0000001000
GO:0009733response to auxin1 (8.33%)0100000000
GO:0042221response to chemical1 (8.33%)0100000000
GO:0009719response to endogenous stimulus1 (8.33%)0100000000
GO:0009725response to hormone1 (8.33%)0100000000
GO:0080167response to karrikin1 (8.33%)0000001000
GO:0010033response to organic substance1 (8.33%)0100000000
GO:0007165signal transduction1 (8.33%)0100000000
GO:0023052signaling1 (8.33%)0100000000
GO:0044700single organism signaling1 (8.33%)0100000000
GO:0044763single-organism cellular process1 (8.33%)0100000000
GO:0044765single-organism transport1 (8.33%)0100000000
GO:0006810transport1 (8.33%)0100000000

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding6 (50.00%)0001401000
GO:0003824catalytic activity6 (50.00%)0000411000
GO:0016740transferase activity5 (41.67%)0000410000
GO:1901363heterocyclic compound binding4 (33.33%)0001201000
GO:0043167ion binding4 (33.33%)0001201000
GO:0097159organic cyclic compound binding4 (33.33%)0001201000
GO:0005524ATP binding3 (25.00%)0000201000
GO:0030554adenyl nucleotide binding3 (25.00%)0000201000
GO:0032559adenyl ribonucleotide binding3 (25.00%)0000201000
GO:0043168anion binding3 (25.00%)0000201000
GO:0097367carbohydrate derivative binding3 (25.00%)0000201000
GO:0001882nucleoside binding3 (25.00%)0000201000
GO:1901265nucleoside phosphate binding3 (25.00%)0000201000
GO:0000166nucleotide binding3 (25.00%)0000201000
GO:0001883purine nucleoside binding3 (25.00%)0000201000
GO:0017076purine nucleotide binding3 (25.00%)0000201000
GO:0032550purine ribonucleoside binding3 (25.00%)0000201000
GO:0035639purine ribonucleoside triphosphate binding3 (25.00%)0000201000
GO:0032555purine ribonucleotide binding3 (25.00%)0000201000
GO:0032549ribonucleoside binding3 (25.00%)0000201000
GO:0032553ribonucleotide binding3 (25.00%)0000201000
GO:0036094small molecule binding3 (25.00%)0000201000
GO:0008170N-methyltransferase activity2 (16.67%)0000200000
GO:0008757S-adenosylmethionine-dependent methyltransferase activity2 (16.67%)0000200000
GO:0042054histone methyltransferase activity2 (16.67%)0000200000
GO:0042800histone methyltransferase activity (H3-K4 specific)2 (16.67%)0000200000
GO:0018024histone-lysine N-methyltransferase activity2 (16.67%)0000200000
GO:0016301kinase activity2 (16.67%)0000200000
GO:0016278lysine N-methyltransferase activity2 (16.67%)0000200000
GO:0008168methyltransferase activity2 (16.67%)0000200000
GO:0003676nucleic acid binding2 (16.67%)0001001000
GO:0016773phosphotransferase activity, alcohol group as acceptor2 (16.67%)0000200000
GO:0005515protein binding2 (16.67%)0000200000
GO:0004672protein kinase activity2 (16.67%)0000200000
GO:0008276protein methyltransferase activity2 (16.67%)0000200000
GO:0004674protein serine/threonine kinase activity2 (16.67%)0000200000
GO:0016279protein-lysine N-methyltransferase activity2 (16.67%)0000200000
GO:0016741transferase activity, transferring one-carbon groups2 (16.67%)0000200000
GO:0016772transferase activity, transferring phosphorus-containing groups2 (16.67%)0000200000
GO:0008026ATP-dependent helicase activity1 (8.33%)0000001000
GO:0016887ATPase activity1 (8.33%)0000001000
GO:0042623ATPase activity, coupled1 (8.33%)0000001000
GO:0003677DNA binding1 (8.33%)0001000000
GO:0008194UDP-glycosyltransferase activity1 (8.33%)0000010000
GO:0022804active transmembrane transporter activity1 (8.33%)0100000000
GO:0043169cation binding1 (8.33%)0001000000
GO:0015018galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity1 (8.33%)0000010000
GO:0015020glucuronosyltransferase activity1 (8.33%)0000010000
GO:0004386helicase activity1 (8.33%)0000001000
GO:0016787hydrolase activity1 (8.33%)0000001000
GO:0016817hydrolase activity, acting on acid anhydrides1 (8.33%)0000001000
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides1 (8.33%)0000001000
GO:0046872metal ion binding1 (8.33%)0001000000
GO:0017111nucleoside-triphosphatase activity1 (8.33%)0000001000
GO:0070035purine NTP-dependent helicase activity1 (8.33%)0000001000
GO:0016462pyrophosphatase activity1 (8.33%)0000001000
GO:0015291secondary active transmembrane transporter activity1 (8.33%)0100000000
GO:0015293symporter activity1 (8.33%)0100000000
GO:0016757transferase activity, transferring glycosyl groups1 (8.33%)0000010000
GO:0016758transferase activity, transferring hexosyl groups1 (8.33%)0000010000
GO:0046914transition metal ion binding1 (8.33%)0001000000
GO:0022857transmembrane transporter activity1 (8.33%)0100000000
GO:0005215transporter activity1 (8.33%)0100000000
GO:0008270zinc ion binding1 (8.33%)0001000000