PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_407
Name: CE3OSOSEM
Description: CE3 (Coupling Element 3) found in the promoter of the rice Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption

#Associated genes: 11
#Associated GO terms: 221

Biological Process
Molecular Function
Cellular Component

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Molecular Function (back to top)

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GO	Description	#Associated genes	bra	gma	ptr	stu	vvi
GO:0005488	binding	5 (45.45%)	1	0	2	1	1
GO:0003824	catalytic activity	4 (36.36%)	0	1	2	1	0
GO:1901363	heterocyclic compound binding	4 (36.36%)	1	0	1	1	1
GO:0097159	organic cyclic compound binding	4 (36.36%)	1	0	1	1	1
GO:0005524	ATP binding	2 (18.18%)	0	0	1	1	0
GO:0003677	DNA binding	2 (18.18%)	1	0	0	0	1
GO:0030554	adenyl nucleotide binding	2 (18.18%)	0	0	1	1	0
GO:0032559	adenyl ribonucleotide binding	2 (18.18%)	0	0	1	1	0
GO:0043168	anion binding	2 (18.18%)	0	0	1	1	0
GO:0097367	carbohydrate derivative binding	2 (18.18%)	0	0	1	1	0
GO:0043167	ion binding	2 (18.18%)	0	0	1	1	0
GO:0016301	kinase activity	2 (18.18%)	0	0	1	1	0
GO:0003676	nucleic acid binding	2 (18.18%)	1	0	0	0	1
GO:0001882	nucleoside binding	2 (18.18%)	0	0	1	1	0
GO:1901265	nucleoside phosphate binding	2 (18.18%)	0	0	1	1	0
GO:0000166	nucleotide binding	2 (18.18%)	0	0	1	1	0
GO:0016773	phosphotransferase activity, alcohol group as acceptor	2 (18.18%)	0	0	1	1	0
GO:0001883	purine nucleoside binding	2 (18.18%)	0	0	1	1	0
GO:0017076	purine nucleotide binding	2 (18.18%)	0	0	1	1	0
GO:0032550	purine ribonucleoside binding	2 (18.18%)	0	0	1	1	0
GO:0035639	purine ribonucleoside triphosphate binding	2 (18.18%)	0	0	1	1	0
GO:0032555	purine ribonucleotide binding	2 (18.18%)	0	0	1	1	0
GO:0032549	ribonucleoside binding	2 (18.18%)	0	0	1	1	0
GO:0032553	ribonucleotide binding	2 (18.18%)	0	0	1	1	0
GO:0036094	small molecule binding	2 (18.18%)	0	0	1	1	0
GO:0016740	transferase activity	2 (18.18%)	0	0	1	1	0
GO:0016772	transferase activity, transferring phosphorus-containing groups	2 (18.18%)	0	0	1	1	0
GO:0016832	aldehyde-lyase activity	1 (9.09%)	0	0	1	0	0
GO:0016830	carbon-carbon lyase activity	1 (9.09%)	0	0	1	0	0
GO:0003682	chromatin binding	1 (9.09%)	1	0	0	0	0
GO:0004332	fructose-bisphosphate aldolase activity	1 (9.09%)	0	0	1	0	0
GO:0016787	hydrolase activity	1 (9.09%)	0	1	0	0	0
GO:0016798	hydrolase activity, acting on glycosyl bonds	1 (9.09%)	0	1	0	0	0
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	1 (9.09%)	0	1	0	0	0
GO:0016829	lyase activity	1 (9.09%)	0	0	1	0	0
GO:0060089	molecular transducer activity	1 (9.09%)	0	0	1	0	0
GO:0001071	nucleic acid binding transcription factor activity	1 (9.09%)	0	0	0	0	1
GO:0019205	nucleobase-containing compound kinase activity	1 (9.09%)	0	0	1	0	0
GO:0019206	nucleoside kinase activity	1 (9.09%)	0	0	1	0	0
GO:0004650	polygalacturonase activity	1 (9.09%)	0	1	0	0	0
GO:0005515	protein binding	1 (9.09%)	0	0	1	0	0
GO:0000988	protein binding transcription factor activity	1 (9.09%)	0	0	1	0	0
GO:0004672	protein kinase activity	1 (9.09%)	0	0	0	1	0
GO:0004674	protein serine/threonine kinase activity	1 (9.09%)	0	0	0	1	0
GO:0043565	sequence-specific DNA binding	1 (9.09%)	0	0	0	0	1
GO:0003700	sequence-specific DNA binding transcription factor activity	1 (9.09%)	0	0	0	0	1
GO:0004871	signal transducer activity	1 (9.09%)	0	0	1	0	0
GO:0003712	transcription cofactor activity	1 (9.09%)	0	0	1	0	0
GO:0000989	transcription factor binding transcription factor activity	1 (9.09%)	0	0	1	0	0
GO:0004849	uridine kinase activity	1 (9.09%)	0	0	1	0	0

Biological Process (back to top)

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GO	Description	#Associated genes	gma	ptr	stu	vvi
GO:0009987	cellular process	5 (45.45%)	0	3	1	1
GO:0008152	metabolic process	5 (45.45%)	1	2	1	1
GO:0071704	organic substance metabolic process	4 (36.36%)	1	1	1	1
GO:0044238	primary metabolic process	4 (36.36%)	1	1	1	1
GO:0044237	cellular metabolic process	3 (27.27%)	0	1	1	1
GO:0044699	single-organism process	3 (27.27%)	0	3	0	0
GO:0048856	anatomical structure development	2 (18.18%)	0	2	0	0
GO:0065007	biological regulation	2 (18.18%)	0	1	0	1
GO:0005975	carbohydrate metabolic process	2 (18.18%)	1	1	0	0
GO:0006725	cellular aromatic compound metabolic process	2 (18.18%)	0	1	0	1
GO:0044260	cellular macromolecule metabolic process	2 (18.18%)	0	0	1	1
GO:0034641	cellular nitrogen compound metabolic process	2 (18.18%)	0	1	0	1
GO:0032502	developmental process	2 (18.18%)	0	2	0	0
GO:0046483	heterocycle metabolic process	2 (18.18%)	0	1	0	1
GO:0043170	macromolecule metabolic process	2 (18.18%)	0	0	1	1
GO:0051704	multi-organism process	2 (18.18%)	0	2	0	0
GO:0007275	multicellular organismal development	2 (18.18%)	0	2	0	0
GO:0032501	multicellular organismal process	2 (18.18%)	0	2	0	0
GO:0006807	nitrogen compound metabolic process	2 (18.18%)	0	1	0	1
GO:0006139	nucleobase-containing compound metabolic process	2 (18.18%)	0	1	0	1
GO:0048513	organ development	2 (18.18%)	0	2	0	0
GO:1901360	organic cyclic compound metabolic process	2 (18.18%)	0	1	0	1
GO:0006796	phosphate-containing compound metabolic process	2 (18.18%)	0	1	1	0
GO:0006793	phosphorus metabolic process	2 (18.18%)	0	1	1	0
GO:0048827	phyllome development	2 (18.18%)	0	2	0	0
GO:0050789	regulation of biological process	2 (18.18%)	0	1	0	1
GO:0050896	response to stimulus	2 (18.18%)	0	2	0	0
GO:0006950	response to stress	2 (18.18%)	0	2	0	0
GO:0048367	shoot system development	2 (18.18%)	0	2	0	0
GO:0044707	single-multicellular organism process	2 (18.18%)	0	2	0	0
GO:0044763	single-organism cellular process	2 (18.18%)	0	2	0	0
GO:0044767	single-organism developmental process	2 (18.18%)	0	2	0	0
GO:0048731	system development	2 (18.18%)	0	2	0	0
GO:0009294	DNA mediated transformation	1 (9.09%)	0	1	0	0
GO:0006739	NADP metabolic process	1 (9.09%)	0	1	0	0
GO:0006740	NADPH regeneration	1 (9.09%)	0	1	0	0
GO:0032774	RNA biosynthetic process	1 (9.09%)	0	0	0	1
GO:0016070	RNA metabolic process	1 (9.09%)	0	0	0	1
GO:0007568	aging	1 (9.09%)	0	1	0	0
GO:0019438	aromatic compound biosynthetic process	1 (9.09%)	0	0	0	1
GO:0009058	biosynthetic process	1 (9.09%)	0	0	0	1
GO:0016052	carbohydrate catabolic process	1 (9.09%)	0	1	0	0
GO:0048440	carpel development	1 (9.09%)	0	1	0	0
GO:0009056	catabolic process	1 (9.09%)	0	1	0	0
GO:0008219	cell death	1 (9.09%)	0	1	0	0
GO:0044249	cellular biosynthetic process	1 (9.09%)	0	0	0	1
GO:0034645	cellular macromolecule biosynthetic process	1 (9.09%)	0	0	0	1
GO:0044271	cellular nitrogen compound biosynthetic process	1 (9.09%)	0	0	0	1
GO:0044267	cellular protein metabolic process	1 (9.09%)	0	0	1	0
GO:0006464	cellular protein modification process	1 (9.09%)	0	0	1	0
GO:0006732	coenzyme metabolic process	1 (9.09%)	0	1	0	0
GO:0051186	cofactor metabolic process	1 (9.09%)	0	1	0	0
GO:0016265	death	1 (9.09%)	0	1	0	0
GO:0006952	defense response	1 (9.09%)	0	1	0	0
GO:0050832	defense response to fungus	1 (9.09%)	0	1	0	0
GO:0009817	defense response to fungus, incompatible interaction	1 (9.09%)	0	1	0	0
GO:0098542	defense response to other organism	1 (9.09%)	0	1	0	0
GO:0009814	defense response, incompatible interaction	1 (9.09%)	0	1	0	0
GO:0003006	developmental process involved in reproduction	1 (9.09%)	0	1	0	0
GO:0009790	embryo development	1 (9.09%)	0	1	0	0
GO:0048437	floral organ development	1 (9.09%)	0	1	0	0
GO:0048438	floral whorl development	1 (9.09%)	0	1	0	0
GO:0009908	flower development	1 (9.09%)	0	1	0	0
GO:0010467	gene expression	1 (9.09%)	0	0	0	1
GO:0006091	generation of precursor metabolites and energy	1 (9.09%)	0	1	0	0
GO:0009292	genetic transfer	1 (9.09%)	0	1	0	0
GO:0006007	glucose catabolic process	1 (9.09%)	0	1	0	0
GO:0006006	glucose metabolic process	1 (9.09%)	0	1	0	0
GO:0006096	glycolysis	1 (9.09%)	0	1	0	0
GO:0048467	gynoecium development	1 (9.09%)	0	1	0	0
GO:0018130	heterocycle biosynthetic process	1 (9.09%)	0	0	0	1
GO:0019320	hexose catabolic process	1 (9.09%)	0	1	0	0
GO:0019318	hexose metabolic process	1 (9.09%)	0	1	0	0
GO:0006955	immune response	1 (9.09%)	0	1	0	0
GO:0002376	immune system process	1 (9.09%)	0	1	0	0
GO:0045087	innate immune response	1 (9.09%)	0	1	0	0
GO:0048366	leaf development	1 (9.09%)	0	1	0	0
GO:0010150	leaf senescence	1 (9.09%)	0	1	0	0
GO:0009059	macromolecule biosynthetic process	1 (9.09%)	0	0	0	1
GO:0043412	macromolecule modification	1 (9.09%)	0	0	1	0
GO:0046365	monosaccharide catabolic process	1 (9.09%)	0	1	0	0
GO:0005996	monosaccharide metabolic process	1 (9.09%)	0	1	0	0
GO:0044764	multi-organism cellular process	1 (9.09%)	0	1	0	0
GO:0048519	negative regulation of biological process	1 (9.09%)	0	1	0	0
GO:0031348	negative regulation of defense response	1 (9.09%)	0	1	0	0
GO:0048585	negative regulation of response to stimulus	1 (9.09%)	0	1	0	0
GO:0046496	nicotinamide nucleotide metabolic process	1 (9.09%)	0	1	0	0
GO:0090304	nucleic acid metabolic process	1 (9.09%)	0	0	0	1
GO:0034654	nucleobase-containing compound biosynthetic process	1 (9.09%)	0	0	0	1
GO:0055086	nucleobase-containing small molecule metabolic process	1 (9.09%)	0	1	0	0
GO:0006753	nucleoside phosphate metabolic process	1 (9.09%)	0	1	0	0
GO:0009117	nucleotide metabolic process	1 (9.09%)	0	1	0	0
GO:0010260	organ senescence	1 (9.09%)	0	1	0	0
GO:1901362	organic cyclic compound biosynthetic process	1 (9.09%)	0	0	0	1
GO:1901576	organic substance biosynthetic process	1 (9.09%)	0	0	0	1
GO:1901575	organic substance catabolic process	1 (9.09%)	0	1	0	0
GO:1901564	organonitrogen compound metabolic process	1 (9.09%)	0	1	0	0
GO:0019637	organophosphate metabolic process	1 (9.09%)	0	1	0	0
GO:0048481	ovule development	1 (9.09%)	0	1	0	0
GO:0055114	oxidation-reduction process	1 (9.09%)	0	1	0	0
GO:0006733	oxidoreduction coenzyme metabolic process	1 (9.09%)	0	1	0	0
GO:0006098	pentose-phosphate shunt	1 (9.09%)	0	1	0	0
GO:0016310	phosphorylation	1 (9.09%)	0	0	1	0
GO:0035670	plant-type ovary development	1 (9.09%)	0	1	0	0
GO:0009791	post-embryonic development	1 (9.09%)	0	1	0	0
GO:0048569	post-embryonic organ development	1 (9.09%)	0	1	0	0
GO:0019538	protein metabolic process	1 (9.09%)	0	0	1	0
GO:0036211	protein modification process	1 (9.09%)	0	0	1	0
GO:0006468	protein phosphorylation	1 (9.09%)	0	0	1	0
GO:0019362	pyridine nucleotide metabolic process	1 (9.09%)	0	1	0	0
GO:0072524	pyridine-containing compound metabolic process	1 (9.09%)	0	1	0	0
GO:2001141	regulation of RNA biosynthetic process	1 (9.09%)	0	0	0	1
GO:0051252	regulation of RNA metabolic process	1 (9.09%)	0	0	0	1
GO:0009889	regulation of biosynthetic process	1 (9.09%)	0	0	0	1
GO:0031326	regulation of cellular biosynthetic process	1 (9.09%)	0	0	0	1
GO:2000112	regulation of cellular macromolecule biosynthetic process	1 (9.09%)	0	0	0	1
GO:0031323	regulation of cellular metabolic process	1 (9.09%)	0	0	0	1
GO:0050794	regulation of cellular process	1 (9.09%)	0	0	0	1
GO:0031347	regulation of defense response	1 (9.09%)	0	1	0	0
GO:0010468	regulation of gene expression	1 (9.09%)	0	0	0	1
GO:0010556	regulation of macromolecule biosynthetic process	1 (9.09%)	0	0	0	1
GO:0060255	regulation of macromolecule metabolic process	1 (9.09%)	0	0	0	1
GO:0019222	regulation of metabolic process	1 (9.09%)	0	0	0	1
GO:0051171	regulation of nitrogen compound metabolic process	1 (9.09%)	0	0	0	1
GO:0019219	regulation of nucleobase-containing compound metabolic process	1 (9.09%)	0	0	0	1
GO:0080090	regulation of primary metabolic process	1 (9.09%)	0	0	0	1
GO:0048583	regulation of response to stimulus	1 (9.09%)	0	1	0	0
GO:0080134	regulation of response to stress	1 (9.09%)	0	1	0	0
GO:0006355	regulation of transcription, DNA-dependent	1 (9.09%)	0	0	0	1
GO:0000003	reproduction	1 (9.09%)	0	1	0	0
GO:0022414	reproductive process	1 (9.09%)	0	1	0	0
GO:0048608	reproductive structure development	1 (9.09%)	0	1	0	0
GO:0061458	reproductive system development	1 (9.09%)	0	1	0	0
GO:0009628	response to abiotic stimulus	1 (9.09%)	0	1	0	0
GO:0009607	response to biotic stimulus	1 (9.09%)	0	1	0	0
GO:0036293	response to decreased oxygen levels	1 (9.09%)	0	1	0	0
GO:0009620	response to fungus	1 (9.09%)	0	1	0	0
GO:0001666	response to hypoxia	1 (9.09%)	0	1	0	0
GO:0051707	response to other organism	1 (9.09%)	0	1	0	0
GO:0070482	response to oxygen levels	1 (9.09%)	0	1	0	0
GO:0044702	single organism reproductive process	1 (9.09%)	0	1	0	0
GO:0044724	single-organism carbohydrate catabolic process	1 (9.09%)	0	1	0	0
GO:0044723	single-organism carbohydrate metabolic process	1 (9.09%)	0	1	0	0
GO:0044712	single-organism catabolic process	1 (9.09%)	0	1	0	0
GO:0044710	single-organism metabolic process	1 (9.09%)	0	1	0	0
GO:0044281	small molecule metabolic process	1 (9.09%)	0	1	0	0
GO:0006351	transcription, DNA-templated	1 (9.09%)	0	0	0	1

Cellular Component (back to top)

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GO	Description	#Associated genes	ptr	ppe	stu	vvi
GO:0005623	cell	6 (54.55%)	3	1	1	1
GO:0044464	cell part	6 (54.55%)	3	1	1	1
GO:0005622	intracellular	5 (45.45%)	3	0	1	1
GO:0044424	intracellular part	5 (45.45%)	3	0	1	1
GO:0043231	intracellular membrane-bounded organelle	4 (36.36%)	3	0	0	1
GO:0043229	intracellular organelle	4 (36.36%)	3	0	0	1
GO:0043227	membrane-bounded organelle	4 (36.36%)	3	0	0	1
GO:0043226	organelle	4 (36.36%)	3	0	0	1
GO:0005737	cytoplasm	3 (27.27%)	2	0	1	0
GO:0030054	cell junction	2 (18.18%)	1	0	1	0
GO:0071944	cell periphery	2 (18.18%)	1	1	0	0
GO:0005911	cell-cell junction	2 (18.18%)	1	0	1	0
GO:0044444	cytoplasmic part	2 (18.18%)	2	0	0	0
GO:0016020	membrane	2 (18.18%)	1	1	0	0
GO:0005634	nucleus	2 (18.18%)	1	0	0	1
GO:0005886	plasma membrane	2 (18.18%)	1	1	0	0
GO:0009506	plasmodesma	2 (18.18%)	1	0	1	0
GO:0055044	symplast	2 (18.18%)	1	0	1	0
GO:0005794	Golgi apparatus	1 (9.09%)	1	0	0	0
GO:0009507	chloroplast	1 (9.09%)	1	0	0	0
GO:0016021	integral to membrane	1 (9.09%)	1	0	0	0
GO:0031224	intrinsic to membrane	1 (9.09%)	1	0	0	0
GO:0044425	membrane part	1 (9.09%)	1	0	0	0
GO:0009536	plastid	1 (9.09%)	1	0	0	0