PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_394
Name: AtTINY2
Description: Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana

#Associated genes: 9
#Associated GO terms: 218

Biological Process
Molecular Function
Cellular Component

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Cellular Component (back to top)

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GO	Description	#Associated genes	ath	bra	ppe	vvi
GO:0005623	cell	4 (44.44%)	1	1	1	1
GO:0044464	cell part	4 (44.44%)	1	1	1	1
GO:0005622	intracellular	4 (44.44%)	1	1	1	1
GO:0043231	intracellular membrane-bounded organelle	4 (44.44%)	1	1	1	1
GO:0043229	intracellular organelle	4 (44.44%)	1	1	1	1
GO:0044424	intracellular part	4 (44.44%)	1	1	1	1
GO:0043227	membrane-bounded organelle	4 (44.44%)	1	1	1	1
GO:0043226	organelle	4 (44.44%)	1	1	1	1
GO:0005634	nucleus	3 (33.33%)	1	1	0	1
GO:0005794	Golgi apparatus	1 (11.11%)	0	0	1	0
GO:0005737	cytoplasm	1 (11.11%)	0	0	1	0
GO:0044444	cytoplasmic part	1 (11.11%)	0	0	1	0

Biological Process (back to top)

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GO	Description	#Associated genes	ath	bra	cme	egr	ppe	vvi
GO:0009987	cellular process	6 (66.67%)	1	1	1	1	1	1
GO:0008152	metabolic process	6 (66.67%)	1	1	1	1	1	1
GO:0032774	RNA biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0016070	RNA metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0019438	aromatic compound biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0065007	biological regulation	5 (55.56%)	1	1	1	1	0	1
GO:0009058	biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0006725	cellular aromatic compound metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0044249	cellular biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0034645	cellular macromolecule biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0044260	cellular macromolecule metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0044237	cellular metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0044271	cellular nitrogen compound biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0034641	cellular nitrogen compound metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0010467	gene expression	5 (55.56%)	1	1	1	1	0	1
GO:0018130	heterocycle biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0046483	heterocycle metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0009059	macromolecule biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0043170	macromolecule metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0006807	nitrogen compound metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0090304	nucleic acid metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0034654	nucleobase-containing compound biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0006139	nucleobase-containing compound metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:1901362	organic cyclic compound biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:1901360	organic cyclic compound metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:1901576	organic substance biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0071704	organic substance metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0044238	primary metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:2001141	regulation of RNA biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0051252	regulation of RNA metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0050789	regulation of biological process	5 (55.56%)	1	1	1	1	0	1
GO:0009889	regulation of biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0031326	regulation of cellular biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:2000112	regulation of cellular macromolecule biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0031323	regulation of cellular metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0050794	regulation of cellular process	5 (55.56%)	1	1	1	1	0	1
GO:0010468	regulation of gene expression	5 (55.56%)	1	1	1	1	0	1
GO:0010556	regulation of macromolecule biosynthetic process	5 (55.56%)	1	1	1	1	0	1
GO:0060255	regulation of macromolecule metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0019222	regulation of metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0051171	regulation of nitrogen compound metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0019219	regulation of nucleobase-containing compound metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0080090	regulation of primary metabolic process	5 (55.56%)	1	1	1	1	0	1
GO:0006355	regulation of transcription, DNA-dependent	5 (55.56%)	1	1	1	1	0	1
GO:0006351	transcription, DNA-templated	5 (55.56%)	1	1	1	1	0	1
GO:0044699	single-organism process	4 (44.44%)	1	1	0	0	1	1
GO:0048856	anatomical structure development	3 (33.33%)	1	1	0	0	0	1
GO:0032502	developmental process	3 (33.33%)	1	1	0	0	0	1
GO:0007275	multicellular organismal development	3 (33.33%)	1	1	0	0	0	1
GO:0032501	multicellular organismal process	3 (33.33%)	1	1	0	0	0	1
GO:0009628	response to abiotic stimulus	3 (33.33%)	1	1	0	0	0	1
GO:0009416	response to light stimulus	3 (33.33%)	1	1	0	0	0	1
GO:0009314	response to radiation	3 (33.33%)	1	1	0	0	0	1
GO:0050896	response to stimulus	3 (33.33%)	1	1	0	0	0	1
GO:0044707	single-multicellular organism process	3 (33.33%)	1	1	0	0	0	1
GO:0044767	single-organism developmental process	3 (33.33%)	1	1	0	0	0	1
GO:0048731	system development	3 (33.33%)	1	1	0	0	0	1
GO:0048366	leaf development	2 (22.22%)	1	1	0	0	0	0
GO:0048827	phyllome development	2 (22.22%)	1	1	0	0	0	0
GO:0010218	response to far red light	2 (22.22%)	1	1	0	0	0	0
GO:0080167	response to karrikin	2 (22.22%)	1	1	0	0	0	0
GO:0010114	response to red light	2 (22.22%)	1	1	0	0	0	0
GO:0009639	response to red or far red light	2 (22.22%)	1	1	0	0	0	0
GO:0048367	shoot system development	2 (22.22%)	1	1	0	0	0	0
GO:0007568	aging	1 (11.11%)	0	0	0	0	0	1
GO:0007154	cell communication	1 (11.11%)	0	0	0	0	0	1
GO:0030154	cell differentiation	1 (11.11%)	0	0	0	0	0	1
GO:0051301	cell division	1 (11.11%)	0	0	0	0	0	1
GO:0042546	cell wall biogenesis	1 (11.11%)	0	0	0	0	1	0
GO:0071554	cell wall organization or biogenesis	1 (11.11%)	0	0	0	0	1	0
GO:0044085	cellular component biogenesis	1 (11.11%)	0	0	0	0	1	0
GO:0071840	cellular component organization or biogenesis	1 (11.11%)	0	0	0	0	1	0
GO:0048869	cellular developmental process	1 (11.11%)	0	0	0	0	0	1
GO:0070887	cellular response to chemical stimulus	1 (11.11%)	0	0	0	0	0	1
GO:0071495	cellular response to endogenous stimulus	1 (11.11%)	0	0	0	0	0	1
GO:0071370	cellular response to gibberellin stimulus	1 (11.11%)	0	0	0	0	0	1
GO:0032870	cellular response to hormone stimulus	1 (11.11%)	0	0	0	0	0	1
GO:0071396	cellular response to lipid	1 (11.11%)	0	0	0	0	0	1
GO:0071310	cellular response to organic substance	1 (11.11%)	0	0	0	0	0	1
GO:1901701	cellular response to oxygen-containing compound	1 (11.11%)	0	0	0	0	0	1
GO:0051716	cellular response to stimulus	1 (11.11%)	0	0	0	0	0	1
GO:0048589	developmental growth	1 (11.11%)	0	0	0	0	0	1
GO:0003006	developmental process involved in reproduction	1 (11.11%)	0	0	0	0	0	1
GO:0009913	epidermal cell differentiation	1 (11.11%)	0	0	0	0	0	1
GO:0008544	epidermis development	1 (11.11%)	0	0	0	0	0	1
GO:0030855	epithelial cell differentiation	1 (11.11%)	0	0	0	0	0	1
GO:0060429	epithelium development	1 (11.11%)	0	0	0	0	0	1
GO:0010154	fruit development	1 (11.11%)	0	0	0	0	0	1
GO:0009740	gibberellic acid mediated signaling pathway	1 (11.11%)	0	0	0	0	0	1
GO:0010476	gibberellin mediated signaling pathway	1 (11.11%)	0	0	0	0	0	1
GO:0040007	growth	1 (11.11%)	0	0	0	0	0	1
GO:0009755	hormone-mediated signaling pathway	1 (11.11%)	0	0	0	0	0	1
GO:0048507	meristem development	1 (11.11%)	0	0	0	0	0	1
GO:0035266	meristem growth	1 (11.11%)	0	0	0	0	0	1
GO:0010073	meristem maintenance	1 (11.11%)	0	0	0	0	0	1
GO:0032504	multicellular organism reproduction	1 (11.11%)	0	0	0	0	0	1
GO:0048609	multicellular organismal reproductive process	1 (11.11%)	0	0	0	0	0	1
GO:0048513	organ development	1 (11.11%)	0	0	0	0	0	1
GO:0010260	organ senescence	1 (11.11%)	0	0	0	0	0	1
GO:0055114	oxidation-reduction process	1 (11.11%)	0	0	0	0	1	0
GO:0009648	photoperiodism	1 (11.11%)	0	0	0	0	0	1
GO:0048573	photoperiodism, flowering	1 (11.11%)	0	0	0	0	0	1
GO:0009832	plant-type cell wall biogenesis	1 (11.11%)	0	0	0	0	1	0
GO:0071669	plant-type cell wall organization or biogenesis	1 (11.11%)	0	0	0	0	1	0
GO:0051254	positive regulation of RNA metabolic process	1 (11.11%)	0	0	0	0	0	1
GO:0048518	positive regulation of biological process	1 (11.11%)	0	0	0	0	0	1
GO:0009891	positive regulation of biosynthetic process	1 (11.11%)	0	0	0	0	0	1
GO:0031328	positive regulation of cellular biosynthetic process	1 (11.11%)	0	0	0	0	0	1
GO:0031325	positive regulation of cellular metabolic process	1 (11.11%)	0	0	0	0	0	1
GO:0048522	positive regulation of cellular process	1 (11.11%)	0	0	0	0	0	1
GO:0010628	positive regulation of gene expression	1 (11.11%)	0	0	0	0	0	1
GO:0010557	positive regulation of macromolecule biosynthetic process	1 (11.11%)	0	0	0	0	0	1
GO:0010604	positive regulation of macromolecule metabolic process	1 (11.11%)	0	0	0	0	0	1
GO:0009893	positive regulation of metabolic process	1 (11.11%)	0	0	0	0	0	1
GO:0051173	positive regulation of nitrogen compound metabolic process	1 (11.11%)	0	0	0	0	0	1
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	1 (11.11%)	0	0	0	0	0	1
GO:0045893	positive regulation of transcription, DNA-dependent	1 (11.11%)	0	0	0	0	0	1
GO:0009791	post-embryonic development	1 (11.11%)	0	0	0	0	0	1
GO:0010646	regulation of cell communication	1 (11.11%)	0	0	0	0	0	1
GO:0045595	regulation of cell differentiation	1 (11.11%)	0	0	0	0	0	1
GO:0051302	regulation of cell division	1 (11.11%)	0	0	0	0	0	1
GO:0040034	regulation of development, heterochronic	1 (11.11%)	0	0	0	0	0	1
GO:0048638	regulation of developmental growth	1 (11.11%)	0	0	0	0	0	1
GO:0050793	regulation of developmental process	1 (11.11%)	0	0	0	0	0	1
GO:0045604	regulation of epidermal cell differentiation	1 (11.11%)	0	0	0	0	0	1
GO:0045682	regulation of epidermis development	1 (11.11%)	0	0	0	0	0	1
GO:0030856	regulation of epithelial cell differentiation	1 (11.11%)	0	0	0	0	0	1
GO:0009937	regulation of gibberellic acid mediated signaling pathway	1 (11.11%)	0	0	0	0	0	1
GO:0040008	regulation of growth	1 (11.11%)	0	0	0	0	0	1
GO:0048509	regulation of meristem development	1 (11.11%)	0	0	0	0	0	1
GO:0010075	regulation of meristem growth	1 (11.11%)	0	0	0	0	0	1
GO:2000026	regulation of multicellular organismal development	1 (11.11%)	0	0	0	0	0	1
GO:0051239	regulation of multicellular organismal process	1 (11.11%)	0	0	0	0	0	1
GO:0048580	regulation of post-embryonic development	1 (11.11%)	0	0	0	0	0	1
GO:0048583	regulation of response to stimulus	1 (11.11%)	0	0	0	0	0	1
GO:0010029	regulation of seed germination	1 (11.11%)	0	0	0	0	0	1
GO:1900140	regulation of seedling development	1 (11.11%)	0	0	0	0	0	1
GO:0009966	regulation of signal transduction	1 (11.11%)	0	0	0	0	0	1
GO:0023051	regulation of signaling	1 (11.11%)	0	0	0	0	0	1
GO:0048506	regulation of timing of meristematic phase transition	1 (11.11%)	0	0	0	0	0	1
GO:0048510	regulation of timing of transition from vegetative to reproductive phase	1 (11.11%)	0	0	0	0	0	1
GO:0000003	reproduction	1 (11.11%)	0	0	0	0	0	1
GO:0022414	reproductive process	1 (11.11%)	0	0	0	0	0	1
GO:0048608	reproductive structure development	1 (11.11%)	0	0	0	0	0	1
GO:0061458	reproductive system development	1 (11.11%)	0	0	0	0	0	1
GO:0042221	response to chemical	1 (11.11%)	0	0	0	0	0	1
GO:0009719	response to endogenous stimulus	1 (11.11%)	0	0	0	0	0	1
GO:0009739	response to gibberellin stimulus	1 (11.11%)	0	0	0	0	0	1
GO:0009725	response to hormone	1 (11.11%)	0	0	0	0	0	1
GO:0033993	response to lipid	1 (11.11%)	0	0	0	0	0	1
GO:0010033	response to organic substance	1 (11.11%)	0	0	0	0	0	1
GO:1901700	response to oxygen-containing compound	1 (11.11%)	0	0	0	0	0	1
GO:0048364	root development	1 (11.11%)	0	0	0	0	0	1
GO:0022622	root system development	1 (11.11%)	0	0	0	0	0	1
GO:0009834	secondary cell wall biogenesis	1 (11.11%)	0	0	0	0	1	0
GO:0048316	seed development	1 (11.11%)	0	0	0	0	0	1
GO:0009845	seed germination	1 (11.11%)	0	0	0	0	0	1
GO:0010431	seed maturation	1 (11.11%)	0	0	0	0	0	1
GO:0090351	seedling development	1 (11.11%)	0	0	0	0	0	1
GO:0007165	signal transduction	1 (11.11%)	0	0	0	0	0	1
GO:0023052	signaling	1 (11.11%)	0	0	0	0	0	1
GO:0044702	single organism reproductive process	1 (11.11%)	0	0	0	0	0	1
GO:0044700	single organism signaling	1 (11.11%)	0	0	0	0	0	1
GO:0044763	single-organism cellular process	1 (11.11%)	0	0	0	0	0	1
GO:0044710	single-organism metabolic process	1 (11.11%)	0	0	0	0	1	0
GO:0043588	skin development	1 (11.11%)	0	0	0	0	0	1
GO:0009888	tissue development	1 (11.11%)	0	0	0	0	0	1
GO:0010228	vegetative to reproductive phase transition of meristem	1 (11.11%)	0	0	0	0	0	1

Molecular Function (back to top)

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GO	Description	#Associated genes	ath	bra	cme	egr	ppe	vvi
GO:0005488	binding	6 (66.67%)	1	1	1	1	1	1
GO:0005515	protein binding	5 (55.56%)	1	1	1	1	0	1
GO:1901363	heterocyclic compound binding	4 (44.44%)	1	1	0	0	1	1
GO:0043167	ion binding	4 (44.44%)	1	1	0	0	1	1
GO:0097159	organic cyclic compound binding	4 (44.44%)	1	1	0	0	1	1
GO:0003824	catalytic activity	3 (33.33%)	1	1	0	0	1	0
GO:0046983	protein dimerization activity	3 (33.33%)	0	0	1	1	0	1
GO:0005524	ATP binding	2 (22.22%)	1	1	0	0	0	0
GO:0030554	adenyl nucleotide binding	2 (22.22%)	1	1	0	0	0	0
GO:0032559	adenyl ribonucleotide binding	2 (22.22%)	1	1	0	0	0	0
GO:0043168	anion binding	2 (22.22%)	1	1	0	0	0	0
GO:0097367	carbohydrate derivative binding	2 (22.22%)	1	1	0	0	0	0
GO:0043169	cation binding	2 (22.22%)	0	0	0	0	1	1
GO:0016787	hydrolase activity	2 (22.22%)	1	1	0	0	0	0
GO:0016817	hydrolase activity, acting on acid anhydrides	2 (22.22%)	1	1	0	0	0	0
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2 (22.22%)	1	1	0	0	0	0
GO:0046872	metal ion binding	2 (22.22%)	0	0	0	0	1	1
GO:0001882	nucleoside binding	2 (22.22%)	1	1	0	0	0	0
GO:1901265	nucleoside phosphate binding	2 (22.22%)	1	1	0	0	0	0
GO:0000166	nucleotide binding	2 (22.22%)	1	1	0	0	0	0
GO:0001883	purine nucleoside binding	2 (22.22%)	1	1	0	0	0	0
GO:0017076	purine nucleotide binding	2 (22.22%)	1	1	0	0	0	0
GO:0032550	purine ribonucleoside binding	2 (22.22%)	1	1	0	0	0	0
GO:0035639	purine ribonucleoside triphosphate binding	2 (22.22%)	1	1	0	0	0	0
GO:0032555	purine ribonucleotide binding	2 (22.22%)	1	1	0	0	0	0
GO:0032549	ribonucleoside binding	2 (22.22%)	1	1	0	0	0	0
GO:0032553	ribonucleotide binding	2 (22.22%)	1	1	0	0	0	0
GO:0036094	small molecule binding	2 (22.22%)	1	1	0	0	0	0
GO:0009055	electron carrier activity	1 (11.11%)	0	0	0	0	1	0
GO:0020037	heme binding	1 (11.11%)	0	0	0	0	1	0
GO:0042802	identical protein binding	1 (11.11%)	0	0	0	0	0	1
GO:0005506	iron ion binding	1 (11.11%)	0	0	0	0	1	0
GO:0003676	nucleic acid binding	1 (11.11%)	0	0	0	0	0	1
GO:0016491	oxidoreductase activity	1 (11.11%)	0	0	0	0	1	0
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1 (11.11%)	0	0	0	0	1	0
GO:0042803	protein homodimerization activity	1 (11.11%)	0	0	0	0	0	1
GO:0046906	tetrapyrrole binding	1 (11.11%)	0	0	0	0	1	0
GO:0046914	transition metal ion binding	1 (11.11%)	0	0	0	0	1	0