PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_386
Name: WRKY11
Description: Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function

#Associated genes: 13
#Associated GO terms: 231

Biological Process
Molecular Function
Cellular Component

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Biological Process (back to top)

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GO	Description	#Associated genes	cme	egr	sly	stu	vvi
GO:0044237	cellular metabolic process	7 (53.85%)	1	2	2	1	1
GO:0009987	cellular process	7 (53.85%)	1	2	2	1	1
GO:0008152	metabolic process	7 (53.85%)	1	2	2	1	1
GO:0044699	single-organism process	6 (46.15%)	1	1	2	1	1
GO:0044260	cellular macromolecule metabolic process	5 (38.46%)	1	2	0	1	1
GO:0043170	macromolecule metabolic process	5 (38.46%)	1	2	0	1	1
GO:0071704	organic substance metabolic process	5 (38.46%)	1	2	0	1	1
GO:0044238	primary metabolic process	5 (38.46%)	1	2	0	1	1
GO:0044763	single-organism cellular process	5 (38.46%)	1	0	2	1	1
GO:0044710	single-organism metabolic process	4 (30.77%)	0	0	2	1	1
GO:0009058	biosynthetic process	3 (23.08%)	1	1	0	1	0
GO:0006725	cellular aromatic compound metabolic process	3 (23.08%)	1	1	0	0	1
GO:0044249	cellular biosynthetic process	3 (23.08%)	1	1	0	1	0
GO:0034645	cellular macromolecule biosynthetic process	3 (23.08%)	1	1	0	1	0
GO:0034641	cellular nitrogen compound metabolic process	3 (23.08%)	1	1	0	0	1
GO:0044267	cellular protein metabolic process	3 (23.08%)	1	1	0	1	0
GO:0022900	electron transport chain	3 (23.08%)	0	0	2	1	0
GO:0010467	gene expression	3 (23.08%)	1	1	0	1	0
GO:0006091	generation of precursor metabolites and energy	3 (23.08%)	0	0	2	1	0
GO:0046483	heterocycle metabolic process	3 (23.08%)	1	1	0	0	1
GO:0009059	macromolecule biosynthetic process	3 (23.08%)	1	1	0	1	0
GO:0006807	nitrogen compound metabolic process	3 (23.08%)	1	1	0	0	1
GO:0090304	nucleic acid metabolic process	3 (23.08%)	1	1	0	0	1
GO:0006139	nucleobase-containing compound metabolic process	3 (23.08%)	1	1	0	0	1
GO:1901360	organic cyclic compound metabolic process	3 (23.08%)	1	1	0	0	1
GO:1901576	organic substance biosynthetic process	3 (23.08%)	1	1	0	1	0
GO:0055114	oxidation-reduction process	3 (23.08%)	0	0	2	1	0
GO:0019538	protein metabolic process	3 (23.08%)	1	1	0	1	0
GO:0050896	response to stimulus	3 (23.08%)	1	1	0	0	1
GO:0032774	RNA biosynthetic process	2 (15.38%)	1	1	0	0	0
GO:0016070	RNA metabolic process	2 (15.38%)	1	1	0	0	0
GO:0048856	anatomical structure development	2 (15.38%)	1	1	0	0	0
GO:0019438	aromatic compound biosynthetic process	2 (15.38%)	1	1	0	0	0
GO:0065007	biological regulation	2 (15.38%)	1	1	0	0	0
GO:0044271	cellular nitrogen compound biosynthetic process	2 (15.38%)	1	1	0	0	0
GO:0006464	cellular protein modification process	2 (15.38%)	1	1	0	0	0
GO:0051716	cellular response to stimulus	2 (15.38%)	1	0	0	0	1
GO:0032502	developmental process	2 (15.38%)	1	1	0	0	0
GO:0003006	developmental process involved in reproduction	2 (15.38%)	1	1	0	0	0
GO:0009790	embryo development	2 (15.38%)	1	1	0	0	0
GO:0009793	embryo development ending in seed dormancy	2 (15.38%)	1	1	0	0	0
GO:0010154	fruit development	2 (15.38%)	1	1	0	0	0
GO:0018130	heterocycle biosynthetic process	2 (15.38%)	1	1	0	0	0
GO:0043412	macromolecule modification	2 (15.38%)	1	1	0	0	0
GO:0007275	multicellular organismal development	2 (15.38%)	1	1	0	0	0
GO:0032501	multicellular organismal process	2 (15.38%)	1	1	0	0	0
GO:0034654	nucleobase-containing compound biosynthetic process	2 (15.38%)	1	1	0	0	0
GO:1901362	organic cyclic compound biosynthetic process	2 (15.38%)	1	1	0	0	0
GO:0006796	phosphate-containing compound metabolic process	2 (15.38%)	1	1	0	0	0
GO:0006793	phosphorus metabolic process	2 (15.38%)	1	1	0	0	0
GO:0016310	phosphorylation	2 (15.38%)	1	1	0	0	0
GO:0009791	post-embryonic development	2 (15.38%)	1	1	0	0	0
GO:0036211	protein modification process	2 (15.38%)	1	1	0	0	0
GO:0006468	protein phosphorylation	2 (15.38%)	1	1	0	0	0
GO:2001141	regulation of RNA biosynthetic process	2 (15.38%)	1	1	0	0	0
GO:0051252	regulation of RNA metabolic process	2 (15.38%)	1	1	0	0	0
GO:0050789	regulation of biological process	2 (15.38%)	1	1	0	0	0
GO:0009889	regulation of biosynthetic process	2 (15.38%)	1	1	0	0	0
GO:0031326	regulation of cellular biosynthetic process	2 (15.38%)	1	1	0	0	0
GO:2000112	regulation of cellular macromolecule biosynthetic process	2 (15.38%)	1	1	0	0	0
GO:0031323	regulation of cellular metabolic process	2 (15.38%)	1	1	0	0	0
GO:0050794	regulation of cellular process	2 (15.38%)	1	1	0	0	0
GO:0010468	regulation of gene expression	2 (15.38%)	1	1	0	0	0
GO:0010556	regulation of macromolecule biosynthetic process	2 (15.38%)	1	1	0	0	0
GO:0060255	regulation of macromolecule metabolic process	2 (15.38%)	1	1	0	0	0
GO:0019222	regulation of metabolic process	2 (15.38%)	1	1	0	0	0
GO:0051171	regulation of nitrogen compound metabolic process	2 (15.38%)	1	1	0	0	0
GO:0019219	regulation of nucleobase-containing compound metabolic process	2 (15.38%)	1	1	0	0	0
GO:0080090	regulation of primary metabolic process	2 (15.38%)	1	1	0	0	0
GO:0006355	regulation of transcription, DNA-dependent	2 (15.38%)	1	1	0	0	0
GO:0000003	reproduction	2 (15.38%)	1	1	0	0	0
GO:0022414	reproductive process	2 (15.38%)	1	1	0	0	0
GO:0048608	reproductive structure development	2 (15.38%)	1	1	0	0	0
GO:0061458	reproductive system development	2 (15.38%)	1	1	0	0	0
GO:0009628	response to abiotic stimulus	2 (15.38%)	1	1	0	0	0
GO:0042221	response to chemical	2 (15.38%)	1	1	0	0	0
GO:0009719	response to endogenous stimulus	2 (15.38%)	1	1	0	0	0
GO:0009725	response to hormone	2 (15.38%)	1	1	0	0	0
GO:0010033	response to organic substance	2 (15.38%)	1	1	0	0	0
GO:0006950	response to stress	2 (15.38%)	0	1	0	0	1
GO:0048316	seed development	2 (15.38%)	1	1	0	0	0
GO:0044702	single organism reproductive process	2 (15.38%)	1	1	0	0	0
GO:0044707	single-multicellular organism process	2 (15.38%)	1	1	0	0	0
GO:0044767	single-organism developmental process	2 (15.38%)	1	1	0	0	0
GO:0048731	system development	2 (15.38%)	1	1	0	0	0
GO:0006351	transcription, DNA-templated	2 (15.38%)	1	1	0	0	0
GO:0006259	DNA metabolic process	1 (7.69%)	0	0	0	0	1
GO:0006281	DNA repair	1 (7.69%)	0	0	0	0	1
GO:0006284	base-excision repair	1 (7.69%)	0	0	0	0	1
GO:0007154	cell communication	1 (7.69%)	1	0	0	0	0
GO:0006974	cellular response to DNA damage stimulus	1 (7.69%)	0	0	0	0	1
GO:0071214	cellular response to abiotic stimulus	1 (7.69%)	1	0	0	0	0
GO:0070887	cellular response to chemical stimulus	1 (7.69%)	1	0	0	0	0
GO:0071368	cellular response to cytokinin stimulus	1 (7.69%)	1	0	0	0	0
GO:0071495	cellular response to endogenous stimulus	1 (7.69%)	1	0	0	0	0
GO:0032870	cellular response to hormone stimulus	1 (7.69%)	1	0	0	0	0
GO:0071482	cellular response to light stimulus	1 (7.69%)	1	0	0	0	0
GO:0071310	cellular response to organic substance	1 (7.69%)	1	0	0	0	0
GO:0071478	cellular response to radiation	1 (7.69%)	1	0	0	0	0
GO:0071491	cellular response to red light	1 (7.69%)	1	0	0	0	0
GO:0071489	cellular response to red or far red light	1 (7.69%)	1	0	0	0	0
GO:0033554	cellular response to stress	1 (7.69%)	0	0	0	0	1
GO:0007623	circadian rhythm	1 (7.69%)	1	0	0	0	0
GO:0009736	cytokinin-activated signaling pathway	1 (7.69%)	1	0	0	0	0
GO:0009755	hormone-mediated signaling pathway	1 (7.69%)	1	0	0	0	0
GO:0006972	hyperosmotic response	1 (7.69%)	0	1	0	0	0
GO:0042538	hyperosmotic salinity response	1 (7.69%)	0	1	0	0	0
GO:0051253	negative regulation of RNA metabolic process	1 (7.69%)	0	1	0	0	0
GO:0048519	negative regulation of biological process	1 (7.69%)	0	1	0	0	0
GO:0009890	negative regulation of biosynthetic process	1 (7.69%)	0	1	0	0	0
GO:0031327	negative regulation of cellular biosynthetic process	1 (7.69%)	0	1	0	0	0
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	1 (7.69%)	0	1	0	0	0
GO:0031324	negative regulation of cellular metabolic process	1 (7.69%)	0	1	0	0	0
GO:0048523	negative regulation of cellular process	1 (7.69%)	0	1	0	0	0
GO:0010629	negative regulation of gene expression	1 (7.69%)	0	1	0	0	0
GO:0010558	negative regulation of macromolecule biosynthetic process	1 (7.69%)	0	1	0	0	0
GO:0010605	negative regulation of macromolecule metabolic process	1 (7.69%)	0	1	0	0	0
GO:0009892	negative regulation of metabolic process	1 (7.69%)	0	1	0	0	0
GO:0051172	negative regulation of nitrogen compound metabolic process	1 (7.69%)	0	1	0	0	0
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	1 (7.69%)	0	1	0	0	0
GO:0045892	negative regulation of transcription, DNA-dependent	1 (7.69%)	0	1	0	0	0
GO:0000160	phosphorelay signal transduction system	1 (7.69%)	1	0	0	0	0
GO:0046777	protein autophosphorylation	1 (7.69%)	1	0	0	0	0
GO:0010161	red light signaling pathway	1 (7.69%)	1	0	0	0	0
GO:0010017	red or far-red light signaling pathway	1 (7.69%)	1	0	0	0	0
GO:0042752	regulation of circadian rhythm	1 (7.69%)	1	0	0	0	0
GO:0009737	response to abscisic acid	1 (7.69%)	0	1	0	0	0
GO:0097305	response to alcohol	1 (7.69%)	0	1	0	0	0
GO:0010200	response to chitin	1 (7.69%)	0	1	0	0	0
GO:0009735	response to cytokinin	1 (7.69%)	1	0	0	0	0
GO:0010035	response to inorganic substance	1 (7.69%)	0	1	0	0	0
GO:0009416	response to light stimulus	1 (7.69%)	1	0	0	0	0
GO:0033993	response to lipid	1 (7.69%)	0	1	0	0	0
GO:1901698	response to nitrogen compound	1 (7.69%)	0	1	0	0	0
GO:0010243	response to organonitrogen compound	1 (7.69%)	0	1	0	0	0
GO:0006970	response to osmotic stress	1 (7.69%)	0	1	0	0	0
GO:1901700	response to oxygen-containing compound	1 (7.69%)	0	1	0	0	0
GO:0009314	response to radiation	1 (7.69%)	1	0	0	0	0
GO:0010114	response to red light	1 (7.69%)	1	0	0	0	0
GO:0009639	response to red or far red light	1 (7.69%)	1	0	0	0	0
GO:0009651	response to salt stress	1 (7.69%)	0	1	0	0	0
GO:0009415	response to water	1 (7.69%)	0	1	0	0	0
GO:0009414	response to water deprivation	1 (7.69%)	0	1	0	0	0
GO:0048511	rhythmic process	1 (7.69%)	1	0	0	0	0
GO:0007165	signal transduction	1 (7.69%)	1	0	0	0	0
GO:0023052	signaling	1 (7.69%)	1	0	0	0	0
GO:0044700	single organism signaling	1 (7.69%)	1	0	0	0	0
GO:0006412	translation	1 (7.69%)	0	0	0	1	0

Molecular Function (back to top)

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GO	Description	#Associated genes	cme	egr	gma	ptr	ppe	sly	stu	vvi
GO:0005488	binding	12 (92.31%)	1	2	2	2	2	2	1	0
GO:0043167	ion binding	10 (76.92%)	0	2	2	2	1	2	1	0
GO:0043169	cation binding	9 (69.23%)	0	1	2	2	1	2	1	0
GO:0046872	metal ion binding	9 (69.23%)	0	1	2	2	1	2	1	0
GO:0003824	catalytic activity	6 (46.15%)	1	1	0	0	0	2	1	1
GO:1901363	heterocyclic compound binding	5 (38.46%)	0	2	0	1	2	0	0	0
GO:0097159	organic cyclic compound binding	5 (38.46%)	0	2	0	1	2	0	0	0
GO:0003676	nucleic acid binding	4 (30.77%)	0	1	0	1	2	0	0	0
GO:0046914	transition metal ion binding	4 (30.77%)	0	0	0	0	1	2	1	0
GO:0008324	cation transmembrane transporter activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0005507	copper ion binding	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0004129	cytochrome-c oxidase activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0015002	heme-copper terminal oxidase activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0015078	hydrogen ion transmembrane transporter activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0022890	inorganic cation transmembrane transporter activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0015075	ion transmembrane transporter activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0015077	monovalent inorganic cation transmembrane transporter activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0016491	oxidoreductase activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0016675	oxidoreductase activity, acting on a heme group of donors	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0016676	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0022891	substrate-specific transmembrane transporter activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0022892	substrate-specific transporter activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0022857	transmembrane transporter activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0005215	transporter activity	3 (23.08%)	0	0	0	0	0	2	1	0
GO:0003677	DNA binding	2 (15.38%)	0	1	0	0	1	0	0	0
GO:0016301	kinase activity	2 (15.38%)	1	1	0	0	0	0	0	0
GO:0016773	phosphotransferase activity, alcohol group as acceptor	2 (15.38%)	1	1	0	0	0	0	0	0
GO:0005515	protein binding	2 (15.38%)	1	1	0	0	0	0	0	0
GO:0004672	protein kinase activity	2 (15.38%)	1	1	0	0	0	0	0	0
GO:0016740	transferase activity	2 (15.38%)	1	1	0	0	0	0	0	0
GO:0016772	transferase activity, transferring phosphorus-containing groups	2 (15.38%)	1	1	0	0	0	0	0	0
GO:0005524	ATP binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0019104	DNA N-glycosylase activity	1 (7.69%)	0	0	0	0	0	0	0	1
GO:0008725	DNA-3-methyladenine glycosylase activity	1 (7.69%)	0	0	0	0	0	0	0	1
GO:0043733	DNA-3-methylbase glycosylase activity	1 (7.69%)	0	0	0	0	0	0	0	1
GO:0030554	adenyl nucleotide binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0032559	adenyl ribonucleotide binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0003905	alkylbase DNA N-glycosylase activity	1 (7.69%)	0	0	0	0	0	0	0	1
GO:0043168	anion binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0097367	carbohydrate derivative binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0003682	chromatin binding	1 (7.69%)	0	0	0	0	1	0	0	0
GO:0016787	hydrolase activity	1 (7.69%)	0	0	0	0	0	0	0	1
GO:0016798	hydrolase activity, acting on glycosyl bonds	1 (7.69%)	0	0	0	0	0	0	0	1
GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	1 (7.69%)	0	0	0	0	0	0	0	1
GO:0060089	molecular transducer activity	1 (7.69%)	1	0	0	0	0	0	0	0
GO:0001882	nucleoside binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:1901265	nucleoside phosphate binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0000166	nucleotide binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0000156	phosphorelay response regulator activity	1 (7.69%)	1	0	0	0	0	0	0	0
GO:0004674	protein serine/threonine kinase activity	1 (7.69%)	1	0	0	0	0	0	0	0
GO:0001883	purine nucleoside binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0017076	purine nucleotide binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0032550	purine ribonucleoside binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0035639	purine ribonucleoside triphosphate binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0032555	purine ribonucleotide binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0032549	ribonucleoside binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0032553	ribonucleotide binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0043565	sequence-specific DNA binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0004871	signal transducer activity	1 (7.69%)	1	0	0	0	0	0	0	0
GO:0036094	small molecule binding	1 (7.69%)	0	1	0	0	0	0	0	0
GO:0003735	structural constituent of ribosome	1 (7.69%)	0	0	0	0	0	0	1	0
GO:0005198	structural molecule activity	1 (7.69%)	0	0	0	0	0	0	1	0
GO:0008270	zinc ion binding	1 (7.69%)	0	0	0	0	1	0	0	0

Cellular Component (back to top)

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GO	Description	#Associated genes	cme	egr	ppe	sly	stu
GO:0005623	cell	4 (30.77%)	1	1	1	0	1
GO:0044464	cell part	4 (30.77%)	1	1	1	0	1
GO:0005622	intracellular	4 (30.77%)	1	1	1	0	1
GO:0016021	integral to membrane	3 (23.08%)	0	0	0	2	1
GO:0043229	intracellular organelle	3 (23.08%)	1	1	0	0	1
GO:0044424	intracellular part	3 (23.08%)	1	1	0	0	1
GO:0031224	intrinsic to membrane	3 (23.08%)	0	0	0	2	1
GO:0016020	membrane	3 (23.08%)	0	0	0	2	1
GO:0044425	membrane part	3 (23.08%)	0	0	0	2	1
GO:0043226	organelle	3 (23.08%)	1	1	0	0	1
GO:0005737	cytoplasm	2 (15.38%)	1	0	0	0	1
GO:0043231	intracellular membrane-bounded organelle	2 (15.38%)	1	1	0	0	0
GO:0043227	membrane-bounded organelle	2 (15.38%)	1	1	0	0	0
GO:0005634	nucleus	2 (15.38%)	1	1	0	0	0
GO:0044444	cytoplasmic part	1 (7.69%)	0	0	0	0	1
GO:0043232	intracellular non-membrane-bounded organelle	1 (7.69%)	0	0	0	0	1
GO:0032991	macromolecular complex	1 (7.69%)	0	0	0	0	1
GO:0043228	non-membrane-bounded organelle	1 (7.69%)	0	0	0	0	1
GO:0030529	ribonucleoprotein complex	1 (7.69%)	0	0	0	0	1
GO:0005840	ribosome	1 (7.69%)	0	0	0	0	1