PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_385
Name: GGTCCCATGMSAUR
Description: Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness

#Associated genes: 406
#Associated MapMan terms: 155

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	106 (26.11%)	6	10	6	27	27	16	5	9
27.3	RNA.regulation of transcription	104 (25.62%)	6	10	6	27	25	16	5	9
30	signalling	31 (7.64%)	3	3	6	2	5	3	6	3
29	protein	24 (5.91%)	2	4	2	4	4	6	1	1
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	21 (5.17%)	0	1	2	7	4	5	0	2
29.4	protein.postranslational modification	21 (5.17%)	2	4	1	4	3	5	1	1
30.2	signalling.receptor kinases	21 (5.17%)	1	2	4	2	2	2	5	3
10	cell wall	14 (3.45%)	0	0	0	4	4	3	1	2
31	cell	12 (2.96%)	1	0	2	3	2	1	1	2
34	transport	12 (2.96%)	1	2	1	3	2	0	1	2
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	11 (2.71%)	2	2	1	3	0	1	0	2
26	misc	10 (2.46%)	1	0	2	1	1	2	1	2
30.2.11	signalling.receptor kinases.leucine rich repeat XI	10 (2.46%)	0	1	4	1	0	0	1	3
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	9 (2.22%)	0	1	2	4	0	0	1	1
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	9 (2.22%)	1	3	0	1	3	1	0	0
29.4.1	protein.postranslational modification.kinase	9 (2.22%)	1	2	1	2	0	1	1	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	9 (2.22%)	1	2	1	2	0	1	1	1
30.2.17	signalling.receptor kinases.DUF 26	9 (2.22%)	0	1	0	1	1	2	4	0
10.7	cell wall.modification	8 (1.97%)	0	0	0	0	4	2	1	1
11	lipid metabolism	8 (1.97%)	0	0	2	0	2	2	0	2
17	hormone metabolism	8 (1.97%)	0	0	2	3	0	0	1	2
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	8 (1.97%)	0	0	0	2	4	1	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	8 (1.97%)	0	0	0	3	2	0	0	3
31.1	cell.organisation	7 (1.72%)	0	0	2	2	1	1	0	1
33	development	7 (1.72%)	2	0	0	2	2	0	0	1
33.99	development.unspecified	7 (1.72%)	2	0	0	2	2	0	0	1
1	PS	6 (1.48%)	0	0	0	2	0	2	1	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	6 (1.48%)	0	0	1	2	1	1	0	1
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	6 (1.48%)	0	0	0	4	1	1	0	0
1.1	PS.lightreaction	5 (1.23%)	0	0	0	2	0	1	1	1
28	DNA	5 (1.23%)	1	0	1	0	2	0	0	1
30.11	signalling.light	5 (1.23%)	1	1	1	0	1	0	1	0
9	mitochondrial electron transport / ATP synthesis	4 (0.99%)	1	0	0	0	0	0	2	1
10.6	cell wall.degradation	4 (0.99%)	0	0	0	3	0	1	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	4 (0.99%)	0	0	0	3	0	1	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	4 (0.99%)	0	0	2	0	0	1	0	1
11.1.7	lipid metabolism.FA synthesis and FA elongation.ACP thioesterase	4 (0.99%)	0	0	2	0	0	1	0	1
17.6	hormone metabolism.gibberelin	4 (0.99%)	0	0	1	2	0	0	1	0
17.6.2	hormone metabolism.gibberelin.signal transduction	4 (0.99%)	0	0	1	2	0	0	1	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	4 (0.99%)	0	0	0	1	3	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	4 (0.99%)	0	1	0	0	2	1	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	4 (0.99%)	1	1	0	0	0	0	1	1
28.1	DNA.synthesis/chromatin structure	4 (0.99%)	1	0	1	0	1	0	0	1
34.99	transport.misc	4 (0.99%)	0	1	0	0	1	0	1	1
20.2	stress.abiotic	3 (0.74%)	0	0	0	1	2	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	3 (0.74%)	1	0	0	0	1	1	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	3 (0.74%)	2	0	0	1	0	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	3 (0.74%)	0	0	0	0	1	1	0	1
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	3 (0.74%)	0	1	0	0	1	0	1	0
29.2.1.1.1.2.2	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L2	3 (0.74%)	0	0	0	0	3	0	0	0
29.5	protein.degradation	3 (0.74%)	0	0	1	0	1	1	0	0
29.5.11	protein.degradation.ubiquitin	3 (0.74%)	0	0	1	0	1	1	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	3 (0.74%)	0	0	1	0	1	1	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	3 (0.74%)	0	0	0	0	3	0	0	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	3 (0.74%)	1	0	0	0	0	0	1	1
31.3	cell.cycle	3 (0.74%)	1	0	0	0	0	0	1	1
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	3 (0.74%)	1	0	0	0	0	0	1	1
19	tetrapyrrole synthesis	3 (0.74%)	1	0	0	1	0	1	0	0
20	stress	3 (0.74%)	0	0	0	1	2	0	0	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	2 (0.49%)	0	0	0	0	0	0	1	1
1.1.5	PS.lightreaction.other electron carrier (ox/red)	2 (0.49%)	0	0	0	2	0	0	0	0
1.1.5.2	PS.lightreaction.other electron carrier (ox/red).ferredoxin	2 (0.49%)	0	0	0	2	0	0	0	0
3	minor CHO metabolism	2 (0.49%)	0	1	0	1	0	0	0	0
3.2	minor CHO metabolism.trehalose	2 (0.49%)	0	1	0	1	0	0	0	0
8	TCA / org transformation	2 (0.49%)	0	1	0	1	0	0	0	0
8.1	TCA / org transformation.TCA	2 (0.49%)	0	1	0	1	0	0	0	0
11.2	lipid metabolism.FA desaturation	2 (0.49%)	0	0	0	0	1	0	0	1
11.2.2	lipid metabolism.FA desaturation.a hydroxylase	2 (0.49%)	0	0	0	0	1	0	0	1
11.9	lipid metabolism.lipid degradation	2 (0.49%)	0	0	0	0	1	1	0	0
12	N-metabolism	2 (0.49%)	0	0	0	0	2	0	0	0
17.5	hormone metabolism.ethylene	2 (0.49%)	0	0	1	0	0	0	0	1
17.5.2	hormone metabolism.ethylene.signal transduction	2 (0.49%)	0	0	1	0	0	0	0	1
19.10	tetrapyrrole synthesis.magnesium chelatase	2 (0.49%)	0	0	0	1	0	1	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	2 (0.49%)	0	0	1	0	0	1	0	0
26.22	misc.short chain dehydrogenase/reductase (SDR)	2 (0.49%)	0	0	0	0	0	1	1	0
26.7	misc.oxidases - copper, flavone etc	2 (0.49%)	0	0	0	0	1	0	0	1
27.3.80	RNA.regulation of transcription.zf-HD	2 (0.49%)	0	0	0	0	1	1	0	0
27.3.99	RNA.regulation of transcription.unclassified	2 (0.49%)	0	0	0	0	1	1	0	0
28.1.1	DNA.synthesis/chromatin structure.retrotransposon/transposase	2 (0.49%)	0	0	0	0	1	0	0	1
3.2.2	minor CHO metabolism.trehalose.TPP	2 (0.49%)	0	1	0	1	0	0	0	0
30.3	signalling.calcium	2 (0.49%)	0	0	1	0	1	0	0	0
30.4	signalling.phosphinositides	2 (0.49%)	1	0	0	0	1	0	0	0
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	2 (0.49%)	1	0	0	0	1	0	0	0
31.4	cell.vesicle transport	2 (0.49%)	0	0	0	1	1	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	2 (0.49%)	0	0	0	1	0	0	0	1
34.19	transport.Major Intrinsic Proteins	2 (0.49%)	0	0	0	1	1	0	0	0
1.1.2	PS.lightreaction.photosystem I	1 (0.25%)	0	0	0	0	0	1	0	0
1.1.2.2	PS.lightreaction.photosystem I.PSI polypeptide subunits	1 (0.25%)	0	0	0	0	0	1	0	0
1.3	PS.calvin cycle	1 (0.25%)	0	0	0	0	0	1	0	0
1.3.9	PS.calvin cycle.seduheptulose bisphosphatase	1 (0.25%)	0	0	0	0	0	1	0	0
6	gluconeogenesis / glyoxylate cycle	1 (0.25%)	0	0	0	1	0	0	0	0
10.1	cell wall.precursor synthesis	1 (0.25%)	0	0	0	1	0	0	0	0
10.1.1	cell wall.precursor synthesis.NDP sugar pyrophosphorylase	1 (0.25%)	0	0	0	1	0	0	0	0
10.1.1.20	cell wall.precursor synthesis.NDP sugar pyrophosphorylase.multiple NDP-Sugars	1 (0.25%)	0	0	0	1	0	0	0	0
10.5	cell wall.cell wall proteins	1 (0.25%)	0	0	0	0	0	0	0	1
10.5.2	cell wall.cell wall proteins.proline rich proteins	1 (0.25%)	0	0	0	0	0	0	0	1
11.9.2	lipid metabolism.lipid degradation.lipases	1 (0.25%)	0	0	0	0	1	0	0	0
11.9.2.1	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	1 (0.25%)	0	0	0	0	1	0	0	0
11.9.4	lipid metabolism.lipid degradation.beta-oxidation	1 (0.25%)	0	0	0	0	0	1	0	0
11.9.4.13	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA reductase	1 (0.25%)	0	0	0	0	0	1	0	0
12.1	N-metabolism.nitrate metabolism	1 (0.25%)	0	0	0	0	1	0	0	0
12.1.2	N-metabolism.nitrate metabolism.nitrite reductase	1 (0.25%)	0	0	0	0	1	0	0	0
12.2	N-metabolism.ammonia metabolism	1 (0.25%)	0	0	0	0	1	0	0	0
12.2.1	N-metabolism.ammonia metabolism.glutamate synthase	1 (0.25%)	0	0	0	0	1	0	0	0
13	amino acid metabolism	1 (0.25%)	0	0	0	0	1	0	0	0
13.2	amino acid metabolism.degradation	1 (0.25%)	0	0	0	0	1	0	0	0
13.2.3	amino acid metabolism.degradation.aspartate family	1 (0.25%)	0	0	0	0	1	0	0	0
13.2.3.5	amino acid metabolism.degradation.aspartate family.lysine	1 (0.25%)	0	0	0	0	1	0	0	0
13.2.3.5.1	mino acid metabolism.degradation.aspartate family.lysine.lysine decarboxylase	1 (0.25%)	0	0	0	0	1	0	0	0
16	secondary metabolism	1 (0.25%)	0	0	0	0	1	0	0	0
16.2	secondary metabolism.phenylpropanoids	1 (0.25%)	0	0	0	0	1	0	0	0
17.2	hormone metabolism.auxin	1 (0.25%)	0	0	0	1	0	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (0.25%)	0	0	0	1	0	0	0	0
17.4	hormone metabolism.cytokinin	1 (0.25%)	0	0	0	0	0	0	0	1
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	1 (0.25%)	0	0	0	0	0	0	0	1
19.11	tetrapyrrole synthesis.magnesium protoporphyrin IX methyltransferase	1 (0.25%)	1	0	0	0	0	0	0	0
20.2.1	stress.abiotic.heat	1 (0.25%)	0	0	0	0	1	0	0	0
20.2.2	stress.abiotic.cold	1 (0.25%)	0	0	0	0	1	0	0	0
20.2.3	stress.abiotic.drought/salt	1 (0.25%)	0	0	0	1	0	0	0	0
6.3	gluconeogenesis / glyoxylate cycle.Malate DH	1 (0.25%)	0	0	0	1	0	0	0	0
9.7	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	1 (0.25%)	0	0	0	0	0	0	1	0
23	nucleotide metabolism	1 (0.25%)	0	0	0	0	0	1	0	0
23.3	nucleotide metabolism.salvage	1 (0.25%)	0	0	0	0	0	1	0	0
23.3.1	nucleotide metabolism.salvage.phosphoribosyltransferases	1 (0.25%)	0	0	0	0	0	1	0	0
23.3.1.3	nucleotide metabolism.salvage.phosphoribosyltransferases.upp	1 (0.25%)	0	0	0	0	0	1	0	0
24	Biodegradation of Xenobiotics	1 (0.25%)	0	0	0	0	0	0	1	0
26.10	misc.cytochrome P450	1 (0.25%)	0	0	0	0	0	0	0	1
26.1	misc.misc2	1 (0.25%)	0	0	1	0	0	0	0	0
26.16	misc.myrosinases-lectin-jacalin	1 (0.25%)	1	0	0	0	0	0	0	0
26.24	misc.GCN5-related N-acetyltransferase	1 (0.25%)	0	0	0	1	0	0	0	0
27.1	RNA.processing	1 (0.25%)	0	0	0	0	1	0	0	0
27.1.2	RNA.processing.RNA helicase	1 (0.25%)	0	0	0	0	1	0	0	0
27.2	RNA.transcription	1 (0.25%)	0	0	0	0	1	0	0	0
27.3.27	RNA.regulation of transcription.NAC domain transcription factor family	1 (0.25%)	0	0	0	0	0	0	1	0
27.3.57	RNA.regulation of transcription.JUMONJI family	1 (0.25%)	0	0	0	0	0	1	0	0
27.3.63	RNA.regulation of transcription.PHD finger transcription factor	1 (0.25%)	0	0	0	1	0	0	0	0
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	1 (0.25%)	0	0	0	0	0	1	0	0
27.3.68	RNA.regulation of transcription.PWWP domain protein	1 (0.25%)	0	0	0	1	0	0	0	0
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	1 (0.25%)	0	0	0	0	0	0	1	0
28.2	DNA.repair	1 (0.25%)	0	0	0	0	1	0	0	0
29.2.1.1.1.2.23	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L23	1 (0.25%)	0	0	0	0	0	0	0	1
29.2.1.2.2.535	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35A	1 (0.25%)	0	0	0	1	0	0	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	1 (0.25%)	0	0	0	0	1	0	0	0
30.2.99	signalling.receptor kinases.misc	1 (0.25%)	1	0	0	0	0	0	0	0
30.5	signalling.G-proteins	1 (0.25%)	0	0	0	0	0	1	0	0
34.1	transport.p- and v-ATPases	1 (0.25%)	1	0	0	0	0	0	0	0
34.1.1	transport.p- and v-ATPases.H+-transporting two-sector ATPase	1 (0.25%)	1	0	0	0	0	0	0	0
34.15	transport.potassium	1 (0.25%)	0	1	0	0	0	0	0	0
34.18	transport.unspecified anions	1 (0.25%)	0	0	1	0	0	0	0	0
34.19.1	transport.Major Intrinsic Proteins.PIP	1 (0.25%)	0	0	0	1	0	0	0	0
34.19.2	transport.Major Intrinsic Proteins.TIP	1 (0.25%)	0	0	0	0	1	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	1 (0.25%)	0	0	0	1	0	0	0	0
8.1.1	TCA / org transformation.TCA.pyruvate DH	1 (0.25%)	0	0	0	1	0	0	0	0
8.1.1.3	TCA / org transformation.TCA.pyruvate DH.E3	1 (0.25%)	0	0	0	1	0	0	0	0
8.1.7	TCA / org transformation.TCA.succinate dehydrogenase	1 (0.25%)	0	1	0	0	0	0	0	0