PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_36
Name: OCETYPEIINTHISTONE
Description: Type II element; Oct-containing composite element Type II found in tobacco histone gene promoter; Oct (octomer) motif is paired with TCA motif to form Type II element; Required for S-phase specific and meristematic tissue-specific expression

#Associated genes: 47
#Associated GO terms: 152

Biological Process
Molecular Function
Cellular Component

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Molecular Function (back to top)

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GO	Description	#Associated genes	ath	bra	cme	egr	gma	ptr	ppe	sly	stu	vvi
GO:0003677	DNA binding	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0005488	binding	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:1901363	heterocyclic compound binding	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0003676	nucleic acid binding	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0097159	organic cyclic compound binding	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0005515	protein binding	44 (93.62%)	5	5	5	3	4	1	6	5	6	4
GO:0046983	protein dimerization activity	43 (91.49%)	5	5	5	2	4	1	6	5	6	4
GO:0046982	protein heterodimerization activity	43 (91.49%)	5	5	5	2	4	1	6	5	6	4
GO:0043565	sequence-specific DNA binding	4 (8.51%)	0	0	0	0	1	0	2	1	0	0
GO:0003682	chromatin binding	1 (2.13%)	0	0	0	1	0	0	0	0	0	0
GO:0003684	damaged DNA binding	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0030527	structural constituent of chromatin	1 (2.13%)	0	0	0	1	0	0	0	0	0	0
GO:0005198	structural molecule activity	1 (2.13%)	0	0	0	1	0	0	0	0	0	0

Cellular Component (back to top)

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GO	Description	#Associated genes	ath	bra	cme	egr	gma	ptr	ppe	sly	stu	vvi
GO:0005623	cell	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0044464	cell part	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0000785	chromatin	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0044427	chromosomal part	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0005694	chromosome	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0005622	intracellular	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0043232	intracellular non-membrane-bounded organelle	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0043229	intracellular organelle	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0044446	intracellular organelle part	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0044424	intracellular part	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0043228	non-membrane-bounded organelle	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0043226	organelle	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0044422	organelle part	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:1990104	DNA bending complex	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0044815	DNA packaging complex	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0032991	macromolecular complex	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0000786	nucleosome	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0043234	protein complex	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0032993	protein-DNA complex	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0043231	intracellular membrane-bounded organelle	44 (93.62%)	5	5	6	3	4	1	6	5	6	3
GO:0043227	membrane-bounded organelle	44 (93.62%)	5	5	6	3	4	1	6	5	6	3
GO:0005634	nucleus	44 (93.62%)	5	5	6	3	4	1	6	5	6	3
GO:0070013	intracellular organelle lumen	23 (48.94%)	3	3	4	1	1	1	4	2	1	3
GO:0031974	membrane-enclosed lumen	23 (48.94%)	3	3	4	1	1	1	4	2	1	3
GO:0031981	nuclear lumen	23 (48.94%)	3	3	4	1	1	1	4	2	1	3
GO:0044428	nuclear part	23 (48.94%)	3	3	4	1	1	1	4	2	1	3
GO:0005730	nucleolus	23 (48.94%)	3	3	4	1	1	1	4	2	1	3
GO:0043233	organelle lumen	23 (48.94%)	3	3	4	1	1	1	4	2	1	3
GO:0071944	cell periphery	16 (34.04%)	2	3	2	1	1	1	2	1	1	2
GO:0005737	cytoplasm	16 (34.04%)	2	3	3	2	1	1	4	0	0	0
GO:0044444	cytoplasmic part	15 (31.91%)	2	3	3	1	1	1	4	0	0	0
GO:0030054	cell junction	14 (29.79%)	3	3	2	1	1	1	3	0	0	0
GO:0005911	cell-cell junction	14 (29.79%)	3	3	2	1	1	1	3	0	0	0
GO:0009507	chloroplast	14 (29.79%)	2	3	2	1	1	1	4	0	0	0
GO:0009506	plasmodesma	14 (29.79%)	3	3	2	1	1	1	3	0	0	0
GO:0009536	plastid	14 (29.79%)	2	3	2	1	1	1	4	0	0	0
GO:0055044	symplast	14 (29.79%)	3	3	2	1	1	1	3	0	0	0
GO:0009579	thylakoid	14 (29.79%)	2	3	2	1	1	1	4	0	0	0
GO:0005829	cytosol	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:0016020	membrane	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:0031090	organelle membrane	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:0005886	plasma membrane	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:0005774	vacuolar membrane	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:0044437	vacuolar part	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:0005773	vacuole	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:0005618	cell wall	4 (8.51%)	0	0	0	0	0	0	0	1	1	2
GO:0030312	external encapsulating structure	4 (8.51%)	0	0	0	0	0	0	0	1	1	2
GO:0005794	Golgi apparatus	2 (4.26%)	2	0	0	0	0	0	0	0	0	0
GO:0044434	chloroplast part	2 (4.26%)	0	0	0	0	0	0	2	0	0	0
GO:0009570	chloroplast stroma	2 (4.26%)	0	0	0	0	0	0	2	0	0	0
GO:0009534	chloroplast thylakoid	2 (4.26%)	0	0	0	0	0	0	2	0	0	0
GO:0031984	organelle subcompartment	2 (4.26%)	0	0	0	0	0	0	2	0	0	0
GO:0044435	plastid part	2 (4.26%)	0	0	0	0	0	0	2	0	0	0
GO:0009532	plastid stroma	2 (4.26%)	0	0	0	0	0	0	2	0	0	0
GO:0031976	plastid thylakoid	2 (4.26%)	0	0	0	0	0	0	2	0	0	0
GO:0005739	mitochondrion	1 (2.13%)	0	0	1	0	0	0	0	0	0	0

Biological Process (back to top)

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GO	Description	#Associated genes	ath	bra	cme	egr	gma	ptr	ppe	sly	stu	vvi
GO:0016043	cellular component organization	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0071840	cellular component organization or biogenesis	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0009987	cellular process	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0006333	chromatin assembly or disassembly	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0006325	chromatin organization	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0051276	chromosome organization	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0006996	organelle organization	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0044763	single-organism cellular process	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0044699	single-organism process	47 (100.00%)	5	5	7	4	4	1	6	5	6	4
GO:0071103	DNA conformation change	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0006259	DNA metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0006323	DNA packaging	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0006725	cellular aromatic compound metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0022607	cellular component assembly	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0044085	cellular component biogenesis	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0034622	cellular macromolecular complex assembly	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0044260	cellular macromolecule metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0044237	cellular metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0034641	cellular nitrogen compound metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0031497	chromatin assembly	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0046483	heterocycle metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0065003	macromolecular complex assembly	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0043933	macromolecular complex subunit organization	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0043170	macromolecule metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0008152	metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0006807	nitrogen compound metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0090304	nucleic acid metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0006139	nucleobase-containing compound metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0006334	nucleosome assembly	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0034728	nucleosome organization	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:1901360	organic cyclic compound metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0071704	organic substance metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0044238	primary metabolic process	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0006461	protein complex assembly	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0070271	protein complex biogenesis	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0071822	protein complex subunit organization	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0065004	protein-DNA complex assembly	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0071824	protein-DNA complex subunit organization	46 (97.87%)	5	5	7	3	4	1	6	5	6	4
GO:0050896	response to stimulus	17 (36.17%)	2	3	2	1	1	1	2	2	1	2
GO:0006950	response to stress	17 (36.17%)	2	3	2	1	1	1	2	2	1	2
GO:0009628	response to abiotic stimulus	13 (27.66%)	2	3	2	1	1	1	2	1	0	0
GO:0042221	response to chemical	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:0010035	response to inorganic substance	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:1901700	response to oxygen-containing compound	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:0009415	response to water	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:0009414	response to water deprivation	12 (25.53%)	2	3	2	1	1	1	2	0	0	0
GO:0009294	DNA mediated transformation	4 (8.51%)	0	0	0	0	0	0	0	1	1	2
GO:0009292	genetic transfer	4 (8.51%)	0	0	0	0	0	0	0	1	1	2
GO:0044764	multi-organism cellular process	4 (8.51%)	0	0	0	0	0	0	0	1	1	2
GO:0051704	multi-organism process	4 (8.51%)	0	0	0	0	0	0	0	1	1	2
GO:0009617	response to bacterium	4 (8.51%)	0	0	0	0	0	0	0	1	1	2
GO:0009607	response to biotic stimulus	4 (8.51%)	0	0	0	0	0	0	0	1	1	2
GO:0051707	response to other organism	4 (8.51%)	0	0	0	0	0	0	0	1	1	2
GO:0009611	response to wounding	4 (8.51%)	0	0	0	0	0	0	0	1	1	2
GO:0008283	cell proliferation	3 (6.38%)	3	0	0	0	0	0	0	0	0	0
GO:0006352	DNA-dependent transcription, initiation	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0032774	RNA biosynthetic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0016070	RNA metabolic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0019438	aromatic compound biosynthetic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0009058	biosynthetic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0044249	cellular biosynthetic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0034645	cellular macromolecule biosynthetic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0044271	cellular nitrogen compound biosynthetic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0010467	gene expression	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0018130	heterocycle biosynthetic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0009059	macromolecule biosynthetic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0034654	nucleobase-containing compound biosynthetic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:1901362	organic cyclic compound biosynthetic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:1901576	organic substance biosynthetic process	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0006351	transcription, DNA-templated	2 (4.26%)	0	0	0	0	1	1	0	0	0	0
GO:0007030	Golgi organization	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0006816	calcium ion transport	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0006812	cation transport	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0072511	divalent inorganic cation transport	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0070838	divalent metal ion transport	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0051234	establishment of localization	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0006811	ion transport	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0051179	localization	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0030001	metal ion transport	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0006970	response to osmotic stress	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0009651	response to salt stress	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0044765	single-organism transport	1 (2.13%)	0	0	0	0	0	0	0	1	0	0
GO:0006810	transport	1 (2.13%)	0	0	0	0	0	0	0	1	0	0