PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_344
Name: MSACRCYM
Description: MSA (M-specific activator) motif in Catharanthus roseus B-type cyclin (CYM) promoter; Essential for M phase-specific expression; Found at -66 to -58

#Associated genes: 96
#Associated MapMan terms: 54

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
31	cell	19 (19.79%)	2	4	1	2	5	1	1	3
30	signalling	13 (13.54%)	3	3	1	2	2	1	0	1
31.3	cell.cycle	12 (12.50%)	2	4	1	0	2	0	1	2
27	RNA	11 (11.46%)	1	0	0	5	4	1	0	0
27.3	RNA.regulation of transcription	11 (11.46%)	1	0	0	5	4	1	0	0
30.5	signalling.G-proteins	9 (9.38%)	2	1	1	2	2	1	0	0
29	protein	6 (6.25%)	0	1	0	0	3	2	0	0
31.4	cell.vesicle transport	5 (5.21%)	0	0	0	1	2	1	0	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	4 (4.17%)	0	0	0	2	2	0	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	3 (3.13%)	0	0	1	0	1	1	0	0
11	lipid metabolism	2 (2.08%)	0	1	0	1	0	0	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	2 (2.08%)	0	1	0	1	0	0	0	0
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	2 (2.08%)	0	1	0	1	0	0	0	0
11.8.1.3	lipid metabolism.exotics (steroids, squalene etc).sphingolipids.ceramide glucosyltransferase	2 (2.08%)	0	1	0	1	0	0	0	0
28	DNA	2 (2.08%)	0	0	0	2	0	0	0	0
28.1	DNA.synthesis/chromatin structure	2 (2.08%)	0	0	0	2	0	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	2 (2.08%)	0	0	0	2	0	0	0	0
29.3	protein.targeting	2 (2.08%)	0	0	0	0	1	1	0	0
29.3.4	protein.targeting.secretory pathway	2 (2.08%)	0	0	0	0	1	1	0	0
29.3.4.3	protein.targeting.secretory pathway.vacuole	2 (2.08%)	0	0	0	0	1	1	0	0
29.6	protein.folding	2 (2.08%)	0	0	0	0	2	0	0	0
30.11	signalling.light	2 (2.08%)	0	2	0	0	0	0	0	0
31.1	cell.organisation	2 (2.08%)	0	0	0	1	1	0	0	0
1	PS	1 (1.04%)	0	0	0	0	0	0	1	0
1.1	PS.lightreaction	1 (1.04%)	0	0	0	0	0	0	1	0
1.1.4	PS.lightreaction.ATP synthase	1 (1.04%)	0	0	0	0	0	0	1	0
1.1.4.4	PS.lightreaction.ATP synthase.gamma chain	1 (1.04%)	0	0	0	0	0	0	1	0
17	hormone metabolism	1 (1.04%)	0	0	0	0	1	0	0	0
17.1	hormone metabolism.abscisic acid	1 (1.04%)	0	0	0	0	1	0	0	0
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	1 (1.04%)	0	0	0	0	1	0	0	0
21	redox	1 (1.04%)	0	0	0	0	1	0	0	0
21.4	redox.glutaredoxins	1 (1.04%)	0	0	0	0	1	0	0	0
26	misc	1 (1.04%)	0	0	0	0	0	0	1	0
26.4	misc.beta 1,3 glucan hydrolases	1 (1.04%)	0	0	0	0	0	0	1	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	1 (1.04%)	0	0	0	1	0	0	0	0
27.3.17	RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family	1 (1.04%)	0	0	0	0	0	1	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (1.04%)	0	0	0	0	1	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (1.04%)	0	0	0	0	1	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (1.04%)	0	0	0	1	0	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (1.04%)	0	0	0	1	0	0	0	0
27.3.62	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	1 (1.04%)	1	0	0	0	0	0	0	0
29.2.1.2.1.27	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S27	1 (1.04%)	0	0	0	0	0	0	0	1
29.4	protein.postranslational modification	1 (1.04%)	0	1	0	0	0	0	0	0
29.5	protein.degradation	1 (1.04%)	0	0	0	0	0	1	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (1.04%)	0	0	0	0	1	0	0	0
29.5.7	protein.degradation.metalloprotease	1 (1.04%)	0	0	0	0	0	1	0	0
30.3	signalling.calcium	1 (1.04%)	0	0	0	0	0	0	0	1
30.4	signalling.phosphinositides	1 (1.04%)	1	0	0	0	0	0	0	0
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	1 (1.04%)	1	0	0	0	0	0	0	0
31.3.1	cell.cycle.peptidylprolyl isomerase	1 (1.04%)	0	1	0	0	0	0	0	0
33	development	1 (1.04%)	1	0	0	0	0	0	0	0
33.99	development.unspecified	1 (1.04%)	1	0	0	0	0	0	0	0
34	transport	1 (1.04%)	0	0	0	0	1	0	0	0
34.1	transport.p- and v-ATPases	1 (1.04%)	0	0	0	0	1	0	0	0