PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_331
Name: AtWER
Description: Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis

#Associated genes: 9
#Associated GO terms: 206

Biological Process
Molecular Function
Cellular Component

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Cellular Component (back to top)

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GO	Description	#Associated genes	ath	bra	gma	vvi
GO:0005623	cell	6 (66.67%)	1	1	2	2
GO:0044464	cell part	6 (66.67%)	1	1	2	2
GO:0005622	intracellular	6 (66.67%)	1	1	2	2
GO:0044424	intracellular part	6 (66.67%)	1	1	2	2
GO:0005737	cytoplasm	4 (44.44%)	0	0	2	2
GO:0044444	cytoplasmic part	4 (44.44%)	0	0	2	2
GO:0043231	intracellular membrane-bounded organelle	4 (44.44%)	1	1	0	2
GO:0043229	intracellular organelle	4 (44.44%)	1	1	0	2
GO:0043227	membrane-bounded organelle	4 (44.44%)	1	1	0	2
GO:0043226	organelle	4 (44.44%)	1	1	0	2
GO:0005829	cytosol	3 (33.33%)	0	0	2	1
GO:0005634	nucleus	3 (33.33%)	1	1	0	1
GO:0030054	cell junction	1 (11.11%)	0	0	0	1
GO:0005911	cell-cell junction	1 (11.11%)	0	0	0	1
GO:0016023	cytoplasmic membrane-bounded vesicle	1 (11.11%)	0	0	0	1
GO:0031410	cytoplasmic vesicle	1 (11.11%)	0	0	0	1
GO:0031988	membrane-bounded vesicle	1 (11.11%)	0	0	0	1
GO:0009506	plasmodesma	1 (11.11%)	0	0	0	1
GO:0055044	symplast	1 (11.11%)	0	0	0	1
GO:0031982	vesicle	1 (11.11%)	0	0	0	1

Molecular Function (back to top)

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GO	Description	#Associated genes	ath	bra	gma	vvi
GO:0001071	nucleic acid binding transcription factor activity	4 (44.44%)	1	1	1	1
GO:0003700	sequence-specific DNA binding transcription factor activity	4 (44.44%)	1	1	1	1
GO:0003677	DNA binding	2 (22.22%)	0	0	1	1
GO:0005488	binding	2 (22.22%)	0	0	1	1
GO:0003824	catalytic activity	2 (22.22%)	0	0	2	0
GO:0051213	dioxygenase activity	2 (22.22%)	0	0	2	0
GO:1901363	heterocyclic compound binding	2 (22.22%)	0	0	1	1
GO:0003676	nucleic acid binding	2 (22.22%)	0	0	1	1
GO:0097159	organic cyclic compound binding	2 (22.22%)	0	0	1	1
GO:0016491	oxidoreductase activity	2 (22.22%)	0	0	2	0
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2 (22.22%)	0	0	2	0
GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2 (22.22%)	0	0	2	0
GO:0003682	chromatin binding	1 (11.11%)	0	0	1	0
GO:0005515	protein binding	1 (11.11%)	0	0	0	1
GO:0043565	sequence-specific DNA binding	1 (11.11%)	0	0	0	1

Biological Process (back to top)

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GO	Description	#Associated genes	ath	bra	gma	vvi
GO:0008152	metabolic process	6 (66.67%)	1	1	3	1
GO:0044699	single-organism process	6 (66.67%)	1	1	3	1
GO:0065007	biological regulation	4 (44.44%)	1	1	1	1
GO:0044237	cellular metabolic process	4 (44.44%)	1	1	1	1
GO:0009987	cellular process	4 (44.44%)	1	1	1	1
GO:0050789	regulation of biological process	4 (44.44%)	1	1	1	1
GO:0031323	regulation of cellular metabolic process	4 (44.44%)	1	1	1	1
GO:0050794	regulation of cellular process	4 (44.44%)	1	1	1	1
GO:0019222	regulation of metabolic process	4 (44.44%)	1	1	1	1
GO:0044710	single-organism metabolic process	4 (44.44%)	1	0	3	0
GO:0032774	RNA biosynthetic process	3 (33.33%)	1	0	1	1
GO:0016070	RNA metabolic process	3 (33.33%)	1	0	1	1
GO:0019438	aromatic compound biosynthetic process	3 (33.33%)	1	0	1	1
GO:0009058	biosynthetic process	3 (33.33%)	1	0	1	1
GO:0006725	cellular aromatic compound metabolic process	3 (33.33%)	1	0	1	1
GO:0044249	cellular biosynthetic process	3 (33.33%)	1	0	1	1
GO:0034645	cellular macromolecule biosynthetic process	3 (33.33%)	1	0	1	1
GO:0044260	cellular macromolecule metabolic process	3 (33.33%)	1	0	1	1
GO:0044271	cellular nitrogen compound biosynthetic process	3 (33.33%)	1	0	1	1
GO:0034641	cellular nitrogen compound metabolic process	3 (33.33%)	1	0	1	1
GO:0010467	gene expression	3 (33.33%)	1	0	1	1
GO:0018130	heterocycle biosynthetic process	3 (33.33%)	1	0	1	1
GO:0046483	heterocycle metabolic process	3 (33.33%)	1	0	1	1
GO:0009059	macromolecule biosynthetic process	3 (33.33%)	1	0	1	1
GO:0043170	macromolecule metabolic process	3 (33.33%)	1	0	1	1
GO:0048519	negative regulation of biological process	3 (33.33%)	1	1	1	0
GO:0048523	negative regulation of cellular process	3 (33.33%)	1	1	1	0
GO:0006807	nitrogen compound metabolic process	3 (33.33%)	1	0	1	1
GO:0090304	nucleic acid metabolic process	3 (33.33%)	1	0	1	1
GO:0034654	nucleobase-containing compound biosynthetic process	3 (33.33%)	1	0	1	1
GO:0006139	nucleobase-containing compound metabolic process	3 (33.33%)	1	0	1	1
GO:1901362	organic cyclic compound biosynthetic process	3 (33.33%)	1	0	1	1
GO:1901360	organic cyclic compound metabolic process	3 (33.33%)	1	0	1	1
GO:1901576	organic substance biosynthetic process	3 (33.33%)	1	0	1	1
GO:0071704	organic substance metabolic process	3 (33.33%)	1	0	1	1
GO:0044238	primary metabolic process	3 (33.33%)	1	0	1	1
GO:0009628	response to abiotic stimulus	3 (33.33%)	1	1	1	0
GO:0042221	response to chemical	3 (33.33%)	1	1	1	0
GO:0009719	response to endogenous stimulus	3 (33.33%)	1	1	1	0
GO:0009725	response to hormone	3 (33.33%)	1	1	1	0
GO:0009753	response to jasmonic acid	3 (33.33%)	1	1	1	0
GO:0014070	response to organic cyclic compound	3 (33.33%)	1	1	1	0
GO:0010033	response to organic substance	3 (33.33%)	1	1	1	0
GO:1901700	response to oxygen-containing compound	3 (33.33%)	1	1	1	0
GO:0009751	response to salicylic acid	3 (33.33%)	1	1	1	0
GO:0050896	response to stimulus	3 (33.33%)	1	1	1	0
GO:0044763	single-organism cellular process	3 (33.33%)	1	1	1	0
GO:0006351	transcription, DNA-templated	3 (33.33%)	1	0	1	1
GO:0048856	anatomical structure development	2 (22.22%)	1	0	0	1
GO:0007154	cell communication	2 (22.22%)	1	1	0	0
GO:0070887	cellular response to chemical stimulus	2 (22.22%)	1	1	0	0
GO:0071495	cellular response to endogenous stimulus	2 (22.22%)	1	1	0	0
GO:0071370	cellular response to gibberellin stimulus	2 (22.22%)	1	1	0	0
GO:0032870	cellular response to hormone stimulus	2 (22.22%)	1	1	0	0
GO:0071395	cellular response to jasmonic acid stimulus	2 (22.22%)	1	1	0	0
GO:0071396	cellular response to lipid	2 (22.22%)	1	1	0	0
GO:0071407	cellular response to organic cyclic compound	2 (22.22%)	1	1	0	0
GO:0071310	cellular response to organic substance	2 (22.22%)	1	1	0	0
GO:1901701	cellular response to oxygen-containing compound	2 (22.22%)	1	1	0	0
GO:0071446	cellular response to salicylic acid stimulus	2 (22.22%)	1	1	0	0
GO:0051716	cellular response to stimulus	2 (22.22%)	1	1	0	0
GO:0032502	developmental process	2 (22.22%)	1	0	0	1
GO:0003006	developmental process involved in reproduction	2 (22.22%)	1	0	0	1
GO:0048437	floral organ development	2 (22.22%)	1	0	0	1
GO:0009908	flower development	2 (22.22%)	1	0	0	1
GO:0009740	gibberellic acid mediated signaling pathway	2 (22.22%)	1	1	0	0
GO:0010476	gibberellin mediated signaling pathway	2 (22.22%)	1	1	0	0
GO:0009755	hormone-mediated signaling pathway	2 (22.22%)	1	1	0	0
GO:0006972	hyperosmotic response	2 (22.22%)	1	1	0	0
GO:0042538	hyperosmotic salinity response	2 (22.22%)	1	1	0	0
GO:0009867	jasmonic acid mediated signaling pathway	2 (22.22%)	1	1	0	0
GO:0007275	multicellular organismal development	2 (22.22%)	1	0	0	1
GO:0032501	multicellular organismal process	2 (22.22%)	1	0	0	1
GO:0010648	negative regulation of cell communication	2 (22.22%)	1	1	0	0
GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	2 (22.22%)	1	1	0	0
GO:0048585	negative regulation of response to stimulus	2 (22.22%)	1	1	0	0
GO:0009968	negative regulation of signal transduction	2 (22.22%)	1	1	0	0
GO:0023057	negative regulation of signaling	2 (22.22%)	1	1	0	0
GO:0048513	organ development	2 (22.22%)	1	0	0	1
GO:0055114	oxidation-reduction process	2 (22.22%)	0	0	2	0
GO:0009791	post-embryonic development	2 (22.22%)	1	0	0	1
GO:0048569	post-embryonic organ development	2 (22.22%)	1	0	0	1
GO:0072593	reactive oxygen species metabolic process	2 (22.22%)	1	1	0	0
GO:2001141	regulation of RNA biosynthetic process	2 (22.22%)	0	0	1	1
GO:0051252	regulation of RNA metabolic process	2 (22.22%)	0	0	1	1
GO:0009889	regulation of biosynthetic process	2 (22.22%)	0	0	1	1
GO:0010646	regulation of cell communication	2 (22.22%)	1	1	0	0
GO:0031326	regulation of cellular biosynthetic process	2 (22.22%)	0	0	1	1
GO:2000112	regulation of cellular macromolecule biosynthetic process	2 (22.22%)	0	0	1	1
GO:0010468	regulation of gene expression	2 (22.22%)	0	0	1	1
GO:0009937	regulation of gibberellic acid mediated signaling pathway	2 (22.22%)	1	1	0	0
GO:0010556	regulation of macromolecule biosynthetic process	2 (22.22%)	0	0	1	1
GO:0060255	regulation of macromolecule metabolic process	2 (22.22%)	0	0	1	1
GO:0051171	regulation of nitrogen compound metabolic process	2 (22.22%)	0	0	1	1
GO:0019219	regulation of nucleobase-containing compound metabolic process	2 (22.22%)	0	0	1	1
GO:0080090	regulation of primary metabolic process	2 (22.22%)	0	0	1	1
GO:2000377	regulation of reactive oxygen species metabolic process	2 (22.22%)	1	1	0	0
GO:0048583	regulation of response to stimulus	2 (22.22%)	1	1	0	0
GO:0009966	regulation of signal transduction	2 (22.22%)	1	1	0	0
GO:0023051	regulation of signaling	2 (22.22%)	1	1	0	0
GO:0006355	regulation of transcription, DNA-dependent	2 (22.22%)	0	0	1	1
GO:0000003	reproduction	2 (22.22%)	1	0	0	1
GO:0022414	reproductive process	2 (22.22%)	1	0	0	1
GO:0048608	reproductive structure development	2 (22.22%)	1	0	0	1
GO:0061458	reproductive system development	2 (22.22%)	1	0	0	1
GO:0009737	response to abscisic acid	2 (22.22%)	1	1	0	0
GO:0097305	response to alcohol	2 (22.22%)	1	1	0	0
GO:0009723	response to ethylene	2 (22.22%)	1	1	0	0
GO:0009739	response to gibberellin stimulus	2 (22.22%)	1	1	0	0
GO:0033993	response to lipid	2 (22.22%)	1	1	0	0
GO:0006970	response to osmotic stress	2 (22.22%)	1	1	0	0
GO:0009651	response to salt stress	2 (22.22%)	1	1	0	0
GO:0006950	response to stress	2 (22.22%)	1	1	0	0
GO:0009863	salicylic acid mediated signaling pathway	2 (22.22%)	1	1	0	0
GO:0048367	shoot system development	2 (22.22%)	1	0	0	1
GO:0007165	signal transduction	2 (22.22%)	1	1	0	0
GO:0023052	signaling	2 (22.22%)	1	1	0	0
GO:0044702	single organism reproductive process	2 (22.22%)	1	0	0	1
GO:0044700	single organism signaling	2 (22.22%)	1	1	0	0
GO:0044707	single-multicellular organism process	2 (22.22%)	1	0	0	1
GO:0044767	single-organism developmental process	2 (22.22%)	1	0	0	1
GO:0048731	system development	2 (22.22%)	1	0	0	1
GO:0009653	anatomical structure morphogenesis	1 (11.11%)	1	0	0	0
GO:0016051	carbohydrate biosynthetic process	1 (11.11%)	1	0	0	0
GO:0005975	carbohydrate metabolic process	1 (11.11%)	1	0	0	0
GO:0048440	carpel development	1 (11.11%)	0	0	0	1
GO:0030154	cell differentiation	1 (11.11%)	1	0	0	0
GO:0048869	cellular developmental process	1 (11.11%)	1	0	0	0
GO:0022611	dormancy process	1 (11.11%)	1	0	0	0
GO:0048444	floral organ morphogenesis	1 (11.11%)	1	0	0	0
GO:0048438	floral whorl development	1 (11.11%)	0	0	0	1
GO:0010154	fruit development	1 (11.11%)	1	0	0	0
GO:0048467	gynoecium development	1 (11.11%)	0	0	0	1
GO:0032504	multicellular organism reproduction	1 (11.11%)	1	0	0	0
GO:0048609	multicellular organismal reproductive process	1 (11.11%)	1	0	0	0
GO:0051253	negative regulation of RNA metabolic process	1 (11.11%)	0	0	1	0
GO:0009890	negative regulation of biosynthetic process	1 (11.11%)	0	0	1	0
GO:0031327	negative regulation of cellular biosynthetic process	1 (11.11%)	0	0	1	0
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	1 (11.11%)	0	0	1	0
GO:0031324	negative regulation of cellular metabolic process	1 (11.11%)	0	0	1	0
GO:0010629	negative regulation of gene expression	1 (11.11%)	0	0	1	0
GO:0010558	negative regulation of macromolecule biosynthetic process	1 (11.11%)	0	0	1	0
GO:0010605	negative regulation of macromolecule metabolic process	1 (11.11%)	0	0	1	0
GO:0009892	negative regulation of metabolic process	1 (11.11%)	0	0	1	0
GO:0051172	negative regulation of nitrogen compound metabolic process	1 (11.11%)	0	0	1	0
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	1 (11.11%)	0	0	1	0
GO:0045892	negative regulation of transcription, DNA-dependent	1 (11.11%)	0	0	1	0
GO:0009312	oligosaccharide biosynthetic process	1 (11.11%)	1	0	0	0
GO:0009311	oligosaccharide metabolic process	1 (11.11%)	1	0	0	0
GO:0009887	organ morphogenesis	1 (11.11%)	1	0	0	0
GO:0048481	ovule development	1 (11.11%)	0	0	0	1
GO:0009698	phenylpropanoid metabolic process	1 (11.11%)	0	0	1	0
GO:0048827	phyllome development	1 (11.11%)	0	0	0	1
GO:0035670	plant-type ovary development	1 (11.11%)	0	0	0	1
GO:0009886	post-embryonic morphogenesis	1 (11.11%)	1	0	0	0
GO:0048563	post-embryonic organ morphogenesis	1 (11.11%)	1	0	0	0
GO:0010325	raffinose family oligosaccharide biosynthetic process	1 (11.11%)	1	0	0	0
GO:2000762	regulation of phenylpropanoid metabolic process	1 (11.11%)	0	0	1	0
GO:0043455	regulation of secondary metabolic process	1 (11.11%)	0	0	1	0
GO:0009411	response to UV	1 (11.11%)	0	0	1	0
GO:0010224	response to UV-B	1 (11.11%)	0	0	1	0
GO:0009416	response to light stimulus	1 (11.11%)	0	0	1	0
GO:0009314	response to radiation	1 (11.11%)	0	0	1	0
GO:0019748	secondary metabolic process	1 (11.11%)	0	0	1	0
GO:0048316	seed development	1 (11.11%)	1	0	0	0
GO:0010162	seed dormancy process	1 (11.11%)	1	0	0	0
GO:0009845	seed germination	1 (11.11%)	1	0	0	0
GO:0010431	seed maturation	1 (11.11%)	1	0	0	0
GO:0090351	seedling development	1 (11.11%)	1	0	0	0
GO:0044711	single-organism biosynthetic process	1 (11.11%)	1	0	0	0
GO:0044723	single-organism carbohydrate metabolic process	1 (11.11%)	1	0	0	0