MapMan terms associated with a binding site

Binding site
Motif_329
Name
AMMORESIIUDCRNIA1
Description
Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation
#Associated genes
859
#Associated MapMan terms
271

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MapMan Description #Associated genes ath bra cme egr gma ptr ppe sly stu vvi
27RNA197 (22.93%)1360951503112025
27.3RNA.regulation of transcription169 (19.67%)116084943276019
29protein70 (8.15%)5506181410309
30signalling43 (5.01%)110415104305
26misc28 (3.26%)1103883103
31cell28 (3.26%)12016113103
29.5protein.degradation26 (3.03%)3402642203
33development24 (2.79%)11011243101
29.4protein.postranslational modification21 (2.44%)1100744103
33.99development.unspecified19 (2.21%)1001843101
34transport19 (2.21%)0000535204
10cell wall17 (1.98%)00010102004
17hormone metabolism17 (1.98%)1301532101
27.3.22RNA.regulation of transcription.HB,Homeobox transcription factor family17 (1.98%)0001631105
20stress16 (1.86%)1101524101
20.2stress.abiotic15 (1.75%)1101524100
30.2signalling.receptor kinases15 (1.75%)0002242203
27.3.25RNA.regulation of transcription.MYB domain transcription factor family14 (1.63%)0101235002
27.3.99RNA.regulation of transcription.unclassified14 (1.63%)0001541102
27.3.67RNA.regulation of transcription.putative transcription regulator13 (1.51%)2002522000
16secondary metabolism12 (1.40%)1005042000
27.3.11RNA.regulation of transcription.C2H2 zinc finger family12 (1.40%)1001540100
27.4RNA.RNA binding12 (1.40%)2000023302
28DNA12 (1.40%)0001044102
17.2hormone metabolism.auxin11 (1.28%)1201321100
28.1DNA.synthesis/chromatin structure11 (1.28%)0001034102
27.3.3RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family10 (1.16%)0000432001
29.2protein.synthesis10 (1.16%)0002402002
31.1cell.organisation10 (1.16%)1101321001
31.2cell.division10 (1.16%)0100241002
17.2.3hormone metabolism.auxin.induced-regulated-responsive-activated9 (1.05%)0201221100
27.1RNA.processing9 (1.05%)0001030104
29.5.11protein.degradation.ubiquitin9 (1.05%)2001300102
11lipid metabolism8 (0.93%)1000311002
20.2.1stress.abiotic.heat8 (0.93%)0100313000
27.3.29RNA.regulation of transcription.TCP transcription factor family8 (0.93%)1000132001
27.3.32RNA.regulation of transcription.WRKY domain transcription factor family8 (0.93%)1000142000
29.3protein.targeting8 (0.93%)1001122001
31.3cell.cycle8 (0.93%)0000151100
1PS7 (0.81%)0000104101
10.2cell wall.cellulose synthesis7 (0.81%)0000022003
21redox7 (0.81%)0100211101
26.10misc.cytochrome P4507 (0.81%)0101202001
27.2RNA.transcription7 (0.81%)0000221200
27.3.6RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family7 (0.81%)1000121101
29.5.9protein.degradation.AAA type7 (0.81%)0200211001
34.99transport.misc7 (0.81%)0000321001
9mitochondrial electron transport / ATP synthesis6 (0.70%)0001021002
10.2.1cell wall.cellulose synthesis.cellulose synthase6 (0.70%)0000021003
13amino acid metabolism6 (0.70%)0100410000
16.10secondary metabolism.simple phenols6 (0.70%)0005010000
26.2misc.UDP glucosyl and glucoronyl transferases6 (0.70%)0001221000
29.2.2protein.synthesis.ribosome biogenesis6 (0.70%)0002201001
29.2.2.3protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications6 (0.70%)0002201001
29.4.1protein.postranslational modification.kinase6 (0.70%)0000311001
29.4.1.57protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII6 (0.70%)0000311001
30.2.11signalling.receptor kinases.leucine rich repeat XI6 (0.70%)0001121100
1.1PS.lightreaction5 (0.58%)0000003101
10.6cell wall.degradation5 (0.58%)0000050000
13.1amino acid metabolism.synthesis5 (0.58%)0000410000
25C1-metabolism5 (0.58%)1001200001
26.7misc.oxidases - copper, flavone etc5 (0.58%)1001020001
27.3.30RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family5 (0.58%)0000410000
27.3.35RNA.regulation of transcription.bZIP transcription factor family5 (0.58%)1000130000
27.3.44RNA.regulation of transcription.Chromatin Remodeling Factors5 (0.58%)1101011000
29.5.11.4.3.2protein.degradation.ubiquitin.E3.SCF.FBOX5 (0.58%)0000221000
30.11signalling.light5 (0.58%)0001120001
30.3signalling.calcium5 (0.58%)0000400100
30.4signalling.phosphinositides5 (0.58%)0001301000
30.5signalling.G-proteins5 (0.58%)0000121001
13.1.6amino acid metabolism.synthesis.aromatic aa4 (0.47%)0000400000
17.5hormone metabolism.ethylene4 (0.47%)0100200001
20.2.99stress.abiotic.unspecified4 (0.47%)1000110100
21.2redox.ascorbate and glutathione4 (0.47%)0100200100
27.3.20RNA.regulation of transcription.G2-like transcription factor family, GARP4 (0.47%)0100101100
27.3.9RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family4 (0.47%)0100200001
29.2.2.3.4protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.WD-repeat proteins4 (0.47%)0002001001
29.2.3protein.synthesis.initiation4 (0.47%)0000201001
29.3.4protein.targeting.secretory pathway4 (0.47%)0000022000
29.5.11.4.2protein.degradation.ubiquitin.E3.RING4 (0.47%)0000100102
29.6protein.folding4 (0.47%)0001030000
33.3development.squamosa promoter binding like (SPL)4 (0.47%)0100300000
2major CHO metabolism3 (0.35%)0001200000
2.2major CHO metabolism.degradation3 (0.35%)0001200000
8TCA / org transformation3 (0.35%)0000101100
11.3lipid metabolism.Phospholipid synthesis3 (0.35%)0000101001
16.2secondary metabolism.phenylpropanoids3 (0.35%)0000012000
20.2.2stress.abiotic.cold3 (0.35%)0001101000
26.3misc.gluco-, galacto- and mannosidases3 (0.35%)0000120000
27.3.17RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family3 (0.35%)0000101001
27.3.40RNA.regulation of transcription.Aux/IAA family3 (0.35%)1000011000
27.3.50RNA.regulation of transcription.General Transcription3 (0.35%)0000300000
27.3.55RNA.regulation of transcription.HDA3 (0.35%)1100100000
28.1.3DNA.synthesis/chromatin structure.histone3 (0.35%)0000011100
29.2.1.2.2.34protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L343 (0.35%)0000110001
29.5.11.5protein.degradation.ubiquitin.ubiquitin protease3 (0.35%)0001100100
29.5.5protein.degradation.serine protease3 (0.35%)0000120000
30.2.17signalling.receptor kinases.DUF 263 (0.35%)0001000101
30.2.3signalling.receptor kinases.leucine rich repeat III3 (0.35%)0000101001
30.2.99signalling.receptor kinases.misc3 (0.35%)0000020001
30.4.1signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase3 (0.35%)0000300000
8.1TCA / org transformation.TCA3 (0.35%)0000101100
9.1mitochondrial electron transport / ATP synthesis.NADH-DH3 (0.35%)0001011000
30.8signalling.misc3 (0.35%)0100110000
34.3transport.amino acids3 (0.35%)0000100002
9.1.1mitochondrial electron transport / ATP synthesis.NADH-DH.complex I3 (0.35%)0001011000
9.1.1.5mitochondrial electron transport / ATP synthesis.NADH-DH.complex I.carbonic anhydrase3 (0.35%)0001011000
1.1.5PS.lightreaction.other electron carrier (ox/red)2 (0.23%)0000002000
1.3PS.calvin cycle2 (0.23%)0000101000
4glycolysis2 (0.23%)0000110000
9.9mitochondrial electron transport / ATP synthesis.F1-ATPase2 (0.23%)0000010001
10.1cell wall.precursor synthesis2 (0.23%)0001000001
10.6.1cell wall.degradation.cellulases and beta -1,4-glucanases2 (0.23%)0000020000
10.6.3cell wall.degradation.pectate lyases and polygalacturonases2 (0.23%)0000020000
11.1lipid metabolism.FA synthesis and FA elongation2 (0.23%)0000200000
11.9lipid metabolism.lipid degradation2 (0.23%)1000010000
13.1.6.1amino acid metabolism.synthesis.aromatic aa.chorismate2 (0.23%)0000200000
13.1.6.1.1amino acid metabolism.synthesis.aromatic aa.chorismate.3-deoxy-D-arabino-heptulosonate 7-phosphate synthase2 (0.23%)0000200000
13.1.6.3amino acid metabolism.synthesis.aromatic aa.phenylalanine2 (0.23%)0000200000
13.1.6.3.1amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase2 (0.23%)0000200000
16.1secondary metabolism.isoprenoids2 (0.23%)0000020000
16.1.4secondary metabolism.isoprenoids.carotenoids2 (0.23%)0000020000
17.2.2hormone metabolism.auxin.signal transduction2 (0.23%)1000100000
17.5.1hormone metabolism.ethylene.synthesis-degradation2 (0.23%)0100000001
17.5.2hormone metabolism.ethylene.signal transduction2 (0.23%)0000200000
2.2.1major CHO metabolism.degradation.sucrose2 (0.23%)0000200000
21.4redox.glutaredoxins2 (0.23%)0000011000
23nucleotide metabolism2 (0.23%)0000100001
23.2nucleotide metabolism.degradation2 (0.23%)0000100001
26.12misc.peroxidases2 (0.23%)0000100100
26.3.4misc.gluco-, galacto- and mannosidases.endoglucanase2 (0.23%)0000020000
27.1.1RNA.processing.splicing2 (0.23%)0001000001
27.3.12RNA.regulation of transcription.C3H zinc finger family2 (0.23%)0000010001
27.3.21RNA.regulation of transcription.GRAS transcription factor family2 (0.23%)0000100100
27.3.23RNA.regulation of transcription.HSF,Heat-shock transcription factor family2 (0.23%)0000011000
27.3.24RNA.regulation of transcription.MADS box transcription factor family2 (0.23%)0000110000
27.3.26RNA.regulation of transcription.MYB-related transcription factor family2 (0.23%)0000010001
27.3.4RNA.regulation of transcription.ARF, Auxin Response Factor family2 (0.23%)0000011000
27.3.5RNA.regulation of transcription.ARR2 (0.23%)0000110000
27.3.52RNA.regulation of transcription.Global transcription factor group2 (0.23%)0000002000
27.3.57RNA.regulation of transcription.JUMONJI family2 (0.23%)0000001001
29.2.1.1.1.1.7protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S72 (0.23%)0000000200
29.2.1.2.2.12protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L122 (0.23%)0001000100
29.2.1.2.2.3protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L32 (0.23%)0000200000
29.2.2.3.1protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.snoRNPs2 (0.23%)0000200000
29.3.1protein.targeting.nucleus2 (0.23%)0000100001
29.3.4.3protein.targeting.secretory pathway.vacuole2 (0.23%)0000020000
29.5.11.20protein.degradation.ubiquitin.proteasom2 (0.23%)1000000001
29.5.11.3protein.degradation.ubiquitin.E22 (0.23%)0000100001
29.5.3protein.degradation.cysteine protease2 (0.23%)1100000000
30.1signalling.in sugar and nutrient physiology2 (0.23%)1000010000
30.7signalling.14-3-3 proteins2 (0.23%)0000200000
34.1transport.p- and v-ATPases2 (0.23%)0000101000
34.12transport.metal2 (0.23%)0000002000
34.13transport.peptides and oligopeptides2 (0.23%)0000001100
34.19transport.Major Intrinsic Proteins2 (0.23%)0000010100
34.19.1transport.Major Intrinsic Proteins.PIP2 (0.23%)0000010100
1.1.1PS.lightreaction.photosystem II1 (0.12%)0000000001
1.1.1.2PS.lightreaction.photosystem II.PSII polypeptide subunits1 (0.12%)0000000001
1.1.2PS.lightreaction.photosystem I1 (0.12%)0000001000
1.1.2.2PS.lightreaction.photosystem I.PSI polypeptide subunits1 (0.12%)0000001000
1.1.40PS.lightreaction.cyclic electron flow-chlororespiration1 (0.12%)0000000100
1.1.5.1PS.lightreaction.other electron carrier (ox/red).plastocyanin1 (0.12%)0000001000
1.1.5.3PS.lightreaction.other electron carrier (ox/red).ferredoxin reductase1 (0.12%)0000001000
1.3.6PS.calvin cycle.aldolase1 (0.12%)0000100000
1.3.8PS.calvin cycle.transketolase1 (0.12%)0000001000
10.1.6cell wall.precursor synthesis.GAE1 (0.12%)0001000000
10.2.2cell wall.cellulose synthesis.COBRA1 (0.12%)0000001000
10.6.2cell wall.degradation.mannan-xylose-arabinose-fucose1 (0.12%)0000010000
10.8.2cell wall.pectin*esterases.acetyl esterase1 (0.12%)0000010000
11.1.10lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase1 (0.12%)0000100000
11.1.8lipid metabolism.FA synthesis and FA elongation.acyl coa ligase1 (0.12%)0000100000
11.10.1lipid metabolism.glycolipid synthesis.MGDG synthase1 (0.12%)0000000001
11.9.2lipid metabolism.lipid degradation.lipases1 (0.12%)0000010000
11.9.4lipid metabolism.lipid degradation.beta-oxidation1 (0.12%)1000000000
11.9.4.5lipid metabolism.lipid degradation.beta-oxidation.acyl-CoA thioesterase1 (0.12%)1000000000
12.2.2N-metabolism.ammonia metabolism.glutamine synthetase1 (0.12%)0000000100
13.1.3amino acid metabolism.synthesis.aspartate family1 (0.12%)0000010000
13.1.3.4amino acid metabolism.synthesis.aspartate family.methionine1 (0.12%)0000010000
13.2.5amino acid metabolism.degradation.serine-glycine-cysteine group1 (0.12%)0100000000
13.2.5.2amino acid metabolism.degradation.serine-glycine-cysteine group.glycine1 (0.12%)0100000000
16.1.4.1secondary metabolism.isoprenoids.carotenoids.phytoene synthase1 (0.12%)0000010000
16.1.4.4secondary metabolism.isoprenoids.carotenoids.lycopene epsilon cyclase1 (0.12%)0000010000
16.8.2secondary metabolism.flavonoids.chalcones1 (0.12%)1000000000
17.1.2hormone metabolism.abscisic acid.signal transduction1 (0.12%)0000010000
17.4.1hormone metabolism.cytokinin.synthesis-degradation1 (0.12%)0000001000
2.2.1.1major CHO metabolism.degradation.sucrose.fructokinase1 (0.12%)0000100000
2.2.1.4major CHO metabolism.degradation.sucrose.hexokinase1 (0.12%)0000100000
2.2.2major CHO metabolism.degradation.starch1 (0.12%)0001000000
2.2.2.1major CHO metabolism.degradation.starch.starch cleavage1 (0.12%)0001000000
2.2.2.1.2major CHO metabolism.degradation.starch.starch cleavage.beta amylase1 (0.12%)0001000000
3minor CHO metabolism1 (0.12%)0000001000
21.2.1redox.ascorbate and glutathione.ascorbate1 (0.12%)0000100000
21.2.2redox.ascorbate and glutathione.glutathione1 (0.12%)0000000100
22.1.2polyamine metabolism.synthesis.SAM decarboxylase1 (0.12%)0000100000
26.3.1misc.gluco-, galacto- and mannosidases.alpha-galactosidase1 (0.12%)0000100000
26.4.1misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase1 (0.12%)0000100000
27.1.19RNA.processing.ribonucleases1 (0.12%)0000010000
27.1.2RNA.processing.RNA helicase1 (0.12%)0000010000
27.3.10RNA.regulation of transcription.C2C2(Zn) YABBY family1 (0.12%)1000000000
27.3.15RNA.regulation of transcription.CCAAT box binding factor family, HAP31 (0.12%)0000100000
27.3.36RNA.regulation of transcription.Argonaute1 (0.12%)0000001000
27.3.37RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family1 (0.12%)0000001000
27.3.38RNA.regulation of transcription.AT-rich interaction domain containing transcription factor family1 (0.12%)0100000000
27.3.41RNA.regulation of transcription.B3 transcription factor family1 (0.12%)0000100000
27.3.62RNA.regulation of transcription.Nucleosome/chromatin assembly factor group1 (0.12%)0001000000
27.3.66RNA.regulation of transcription.Psudo ARR transcription factor family1 (0.12%)0000000001
27.3.69RNA.regulation of transcription.SET-domain transcriptional regulator family1 (0.12%)0000100000
27.3.8RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family1 (0.12%)0000000001
27.3.80RNA.regulation of transcription.zf-HD1 (0.12%)0000010000
29.1.12protein.aa activation.aspartate-tRNA ligase1 (0.12%)0000010000
29.2.1.1.1.2.12protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L121 (0.12%)0000100000
29.2.1.1.1.2.3protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L31 (0.12%)0000010000
29.2.1.1.3.2.1712protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L7/L121 (0.12%)0000000001
29.2.1.2.2.11protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L111 (0.12%)0000010000
29.2.1.2.2.21protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L211 (0.12%)0000001000
29.2.1.2.2.29protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L291 (0.12%)0000001000
29.2.1.2.2.7protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L71 (0.12%)0000010000
29.3.3protein.targeting.chloroplast1 (0.12%)0001000000
29.3.4.1protein.targeting.secretory pathway.ER1 (0.12%)0000001000
29.3.4.99protein.targeting.secretory pathway.unspecified1 (0.12%)0000001000
29.5.11.4.1protein.degradation.ubiquitin.E3.HECT1 (0.12%)0000100000
29.5.11.4.5.2protein.degradation.ubiquitin.E3.BTB/POZ Cullin3.BTB/POZ1 (0.12%)0001000000
29.5.7protein.degradation.metalloprotease1 (0.12%)0000001000
3.2minor CHO metabolism.trehalose1 (0.12%)0000001000
3.2.2minor CHO metabolism.trehalose.TPP1 (0.12%)0000001000
30.11.1signalling.light.COP9 signalosome1 (0.12%)0000000001
30.4.2signalling.phosphinositides.phosphatidylinositol 4-kinase1 (0.12%)0001000000
30.4.3signalling.phosphinositides.bis(5-nucleosyl)-tetraphosphatase1 (0.12%)0000001000
31.2.5cell.division.plastid1 (0.12%)0000001000
4.1glycolysis.cytosolic branch1 (0.12%)0000100000
4.2glycolysis.plastid branch1 (0.12%)0000010000
7OPP1 (0.12%)0000100000
7.1OPP.oxidative PP1 (0.12%)0000100000
9.7mitochondrial electron transport / ATP synthesis.cytochrome c oxidase1 (0.12%)0000000001
10.5cell wall.cell wall proteins1 (0.12%)0000010000
10.7cell wall.modification1 (0.12%)0000010000
10.8cell wall.pectin*esterases1 (0.12%)0000010000
11.10lipid metabolism.glycolipid synthesis1 (0.12%)0000000001
12N-metabolism1 (0.12%)0000000100
12.2N-metabolism.ammonia metabolism1 (0.12%)0000000100
13.2amino acid metabolism.degradation1 (0.12%)0100000000
15metal handling1 (0.12%)1000000000
15.2metal handling.binding, chelation and storage1 (0.12%)1000000000
16.8secondary metabolism.flavonoids1 (0.12%)1000000000
17.1hormone metabolism.abscisic acid1 (0.12%)0000010000
17.4hormone metabolism.cytokinin1 (0.12%)0000001000
19tetrapyrrole synthesis1 (0.12%)0000100000
19.2tetrapyrrole synthesis.glu-tRNA reductase1 (0.12%)0000100000
20.1stress.biotic1 (0.12%)0000000001
21.1redox.thioredoxin1 (0.12%)0000000001
22polyamine metabolism1 (0.12%)0000100000
22.1polyamine metabolism.synthesis1 (0.12%)0000100000
24Biodegradation of Xenobiotics1 (0.12%)0000010000
26.16misc.myrosinases-lectin-jacalin1 (0.12%)0000000001
26.19misc.plastocyanin-like1 (0.12%)0000100000
26.21misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein1 (0.12%)0000010000
26.4misc.beta 1,3 glucan hydrolases1 (0.12%)0000100000
26.5misc.acyl transferases1 (0.12%)0000010000
28.2DNA.repair1 (0.12%)0000010000
29.1protein.aa activation1 (0.12%)0000010000
30.10signalling.phosphorelay1 (0.12%)0000100000
33.1development.storage proteins1 (0.12%)0000100000
34.9transport.metabolite transporters at the mitochondrial membrane1 (0.12%)0000000001
4.1.4glycolysis.cytosolic branch.phosphofructokinase (PFK)1 (0.12%)0000100000
4.2.14glycolysis.plastid branch.pyruvate kinase (PK)1 (0.12%)0000010000
7.1.3OPP.oxidative PP.6-phosphogluconate dehydrogenase1 (0.12%)0000100000
8.1.1TCA / org transformation.TCA.pyruvate DH1 (0.12%)0000000100
8.1.1.3TCA / org transformation.TCA.pyruvate DH.E31 (0.12%)0000000100
8.1.3TCA / org transformation.TCA.aconitase1 (0.12%)0000100000
8.1.9TCA / org transformation.TCA.malate DH1 (0.12%)0000001000