PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_290
Name: CCTCGTGTCTCGMGH3
Description: Sequence found in D1 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein

#Associated genes: 9
#Associated GO terms: 136

Biological Process
Molecular Function
Cellular Component

Show species without binding site experiments

Molecular Function (back to top)

Click table-header(s) to enable sorting

GO	Description	#Associated genes	cme	gma	vvi
GO:0005488	binding	3 (33.33%)	1	0	2
GO:0003677	DNA binding	2 (22.22%)	1	0	1
GO:1901363	heterocyclic compound binding	2 (22.22%)	1	0	1
GO:0003676	nucleic acid binding	2 (22.22%)	1	0	1
GO:0097159	organic cyclic compound binding	2 (22.22%)	1	0	1
GO:0016881	acid-amino acid ligase activity	1 (11.11%)	0	1	0
GO:0003824	catalytic activity	1 (11.11%)	0	1	0
GO:0043169	cation binding	1 (11.11%)	0	0	1
GO:0003682	chromatin binding	1 (11.11%)	0	0	1
GO:0010279	indole-3-acetic acid amido synthetase activity	1 (11.11%)	0	1	0
GO:0043167	ion binding	1 (11.11%)	0	0	1
GO:0016874	ligase activity	1 (11.11%)	0	1	0
GO:0016879	ligase activity, forming carbon-nitrogen bonds	1 (11.11%)	0	1	0
GO:0046872	metal ion binding	1 (11.11%)	0	0	1
GO:0001071	nucleic acid binding transcription factor activity	1 (11.11%)	1	0	0
GO:0000975	regulatory region DNA binding	1 (11.11%)	1	0	0
GO:0001067	regulatory region nucleic acid binding	1 (11.11%)	1	0	0
GO:0043565	sequence-specific DNA binding	1 (11.11%)	1	0	0
GO:0003700	sequence-specific DNA binding transcription factor activity	1 (11.11%)	1	0	0
GO:0044212	transcription regulatory region DNA binding	1 (11.11%)	1	0	0
GO:0000976	transcription regulatory region sequence-specific DNA binding	1 (11.11%)	1	0	0

Biological Process (back to top)

Click table-header(s) to enable sorting

GO	Description	#Associated genes	cme	gma	ptr	vvi
GO:0065007	biological regulation	3 (33.33%)	1	1	1	0
GO:0009987	cellular process	2 (22.22%)	1	0	1	0
GO:0051179	localization	2 (22.22%)	0	0	1	1
GO:0065008	regulation of biological quality	2 (22.22%)	0	1	1	0
GO:0009628	response to abiotic stimulus	2 (22.22%)	0	1	1	0
GO:0050896	response to stimulus	2 (22.22%)	0	1	1	0
GO:0044699	single-organism process	2 (22.22%)	0	0	1	1
GO:0032774	RNA biosynthetic process	1 (11.11%)	1	0	0	0
GO:0016070	RNA metabolic process	1 (11.11%)	1	0	0	0
GO:0048856	anatomical structure development	1 (11.11%)	0	0	1	0
GO:0019438	aromatic compound biosynthetic process	1 (11.11%)	1	0	0	0
GO:0010252	auxin homeostasis	1 (11.11%)	0	1	0	0
GO:0009058	biosynthetic process	1 (11.11%)	1	0	0	0
GO:0006812	cation transport	1 (11.11%)	0	0	0	1
GO:0006725	cellular aromatic compound metabolic process	1 (11.11%)	1	0	0	0
GO:0044249	cellular biosynthetic process	1 (11.11%)	1	0	0	0
GO:0044085	cellular component biogenesis	1 (11.11%)	0	0	1	0
GO:0071840	cellular component organization or biogenesis	1 (11.11%)	0	0	1	0
GO:0034645	cellular macromolecule biosynthetic process	1 (11.11%)	1	0	0	0
GO:0044260	cellular macromolecule metabolic process	1 (11.11%)	1	0	0	0
GO:0044237	cellular metabolic process	1 (11.11%)	1	0	0	0
GO:0044271	cellular nitrogen compound biosynthetic process	1 (11.11%)	1	0	0	0
GO:0034641	cellular nitrogen compound metabolic process	1 (11.11%)	1	0	0	0
GO:0048610	cellular process involved in reproduction	1 (11.11%)	0	0	1	0
GO:0048878	chemical homeostasis	1 (11.11%)	0	1	0	0
GO:0032502	developmental process	1 (11.11%)	0	0	1	0
GO:0003006	developmental process involved in reproduction	1 (11.11%)	0	0	1	0
GO:0051234	establishment of localization	1 (11.11%)	0	0	0	1
GO:0010154	fruit development	1 (11.11%)	0	0	1	0
GO:0010467	gene expression	1 (11.11%)	1	0	0	0
GO:0018130	heterocycle biosynthetic process	1 (11.11%)	1	0	0	0
GO:0046483	heterocycle metabolic process	1 (11.11%)	1	0	0	0
GO:0042592	homeostatic process	1 (11.11%)	0	1	0	0
GO:0006811	ion transport	1 (11.11%)	0	0	0	1
GO:0010876	lipid localization	1 (11.11%)	0	0	1	0
GO:0019915	lipid storage	1 (11.11%)	0	0	1	0
GO:0009059	macromolecule biosynthetic process	1 (11.11%)	1	0	0	0
GO:0033036	macromolecule localization	1 (11.11%)	0	0	1	0
GO:0043170	macromolecule metabolic process	1 (11.11%)	1	0	0	0
GO:0051235	maintenance of location	1 (11.11%)	0	0	1	0
GO:0008152	metabolic process	1 (11.11%)	1	0	0	0
GO:0030001	metal ion transport	1 (11.11%)	0	0	0	1
GO:0007275	multicellular organismal development	1 (11.11%)	0	0	1	0
GO:0032501	multicellular organismal process	1 (11.11%)	0	0	1	0
GO:0006807	nitrogen compound metabolic process	1 (11.11%)	1	0	0	0
GO:0090304	nucleic acid metabolic process	1 (11.11%)	1	0	0	0
GO:0034654	nucleobase-containing compound biosynthetic process	1 (11.11%)	1	0	0	0
GO:0006139	nucleobase-containing compound metabolic process	1 (11.11%)	1	0	0	0
GO:1901362	organic cyclic compound biosynthetic process	1 (11.11%)	1	0	0	0
GO:1901360	organic cyclic compound metabolic process	1 (11.11%)	1	0	0	0
GO:1901576	organic substance biosynthetic process	1 (11.11%)	1	0	0	0
GO:0071704	organic substance metabolic process	1 (11.11%)	1	0	0	0
GO:0009791	post-embryonic development	1 (11.11%)	0	0	1	0
GO:0044238	primary metabolic process	1 (11.11%)	1	0	0	0
GO:2001141	regulation of RNA biosynthetic process	1 (11.11%)	1	0	0	0
GO:0051252	regulation of RNA metabolic process	1 (11.11%)	1	0	0	0
GO:0050789	regulation of biological process	1 (11.11%)	1	0	0	0
GO:0009889	regulation of biosynthetic process	1 (11.11%)	1	0	0	0
GO:0031326	regulation of cellular biosynthetic process	1 (11.11%)	1	0	0	0
GO:2000112	regulation of cellular macromolecule biosynthetic process	1 (11.11%)	1	0	0	0
GO:0031323	regulation of cellular metabolic process	1 (11.11%)	1	0	0	0
GO:0050794	regulation of cellular process	1 (11.11%)	1	0	0	0
GO:0010468	regulation of gene expression	1 (11.11%)	1	0	0	0
GO:0010556	regulation of macromolecule biosynthetic process	1 (11.11%)	1	0	0	0
GO:0060255	regulation of macromolecule metabolic process	1 (11.11%)	1	0	0	0
GO:0019222	regulation of metabolic process	1 (11.11%)	1	0	0	0
GO:0051171	regulation of nitrogen compound metabolic process	1 (11.11%)	1	0	0	0
GO:0019219	regulation of nucleobase-containing compound metabolic process	1 (11.11%)	1	0	0	0
GO:0080090	regulation of primary metabolic process	1 (11.11%)	1	0	0	0
GO:0006355	regulation of transcription, DNA-dependent	1 (11.11%)	1	0	0	0
GO:0000003	reproduction	1 (11.11%)	0	0	1	0
GO:0022414	reproductive process	1 (11.11%)	0	0	1	0
GO:0048608	reproductive structure development	1 (11.11%)	0	0	1	0
GO:0061458	reproductive system development	1 (11.11%)	0	0	1	0
GO:0009733	response to auxin	1 (11.11%)	0	1	0	0
GO:0042221	response to chemical	1 (11.11%)	0	1	0	0
GO:0009409	response to cold	1 (11.11%)	0	0	1	0
GO:0009719	response to endogenous stimulus	1 (11.11%)	0	1	0	0
GO:0050826	response to freezing	1 (11.11%)	0	0	1	0
GO:0009725	response to hormone	1 (11.11%)	0	1	0	0
GO:0009416	response to light stimulus	1 (11.11%)	0	1	0	0
GO:0010033	response to organic substance	1 (11.11%)	0	1	0	0
GO:0009314	response to radiation	1 (11.11%)	0	1	0	0
GO:0006950	response to stress	1 (11.11%)	0	0	1	0
GO:0009266	response to temperature stimulus	1 (11.11%)	0	0	1	0
GO:0048316	seed development	1 (11.11%)	0	0	1	0
GO:0009845	seed germination	1 (11.11%)	0	0	1	0
GO:0010344	seed oilbody biogenesis	1 (11.11%)	0	0	1	0
GO:0090351	seedling development	1 (11.11%)	0	0	1	0
GO:0019953	sexual reproduction	1 (11.11%)	0	0	1	0
GO:0044702	single organism reproductive process	1 (11.11%)	0	0	1	0
GO:0044707	single-multicellular organism process	1 (11.11%)	0	0	1	0
GO:0044767	single-organism developmental process	1 (11.11%)	0	0	1	0
GO:0044765	single-organism transport	1 (11.11%)	0	0	0	1
GO:0048731	system development	1 (11.11%)	0	0	1	0
GO:0006351	transcription, DNA-templated	1 (11.11%)	1	0	0	0
GO:0006810	transport	1 (11.11%)	0	0	0	1

Cellular Component (back to top)

Click table-header(s) to enable sorting

GO	Description	#Associated genes	cme	ptr
GO:0005623	cell	2 (22.22%)	1	1
GO:0044464	cell part	2 (22.22%)	1	1
GO:0005622	intracellular	2 (22.22%)	1	1
GO:0043231	intracellular membrane-bounded organelle	2 (22.22%)	1	1
GO:0043229	intracellular organelle	2 (22.22%)	1	1
GO:0044424	intracellular part	2 (22.22%)	1	1
GO:0043227	membrane-bounded organelle	2 (22.22%)	1	1
GO:0043226	organelle	2 (22.22%)	1	1
GO:0005737	cytoplasm	1 (11.11%)	0	1
GO:0044444	cytoplasmic part	1 (11.11%)	0	1
GO:0005576	extracellular region	1 (11.11%)	0	1
GO:0016021	integral to membrane	1 (11.11%)	0	1
GO:0031224	intrinsic to membrane	1 (11.11%)	0	1
GO:0005811	lipid particle	1 (11.11%)	0	1
GO:0016020	membrane	1 (11.11%)	0	1
GO:0044425	membrane part	1 (11.11%)	0	1
GO:0012511	monolayer-surrounded lipid storage body	1 (11.11%)	0	1
GO:0005634	nucleus	1 (11.11%)	1	0