PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_28
Name: POLLEN2LELAT52
Description: One of two co-dependent regulatory elements responsible for pollen specific activation of tomato lat52 gene; Found at -60 to -52 region; See POLLEN1LELAT52; AGAAA and TCCACCATA are required for pollen specific expression

#Associated genes: 150
#Associated MapMan terms: 96

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	31 (20.67%)	3	3	3	2	10	5	0	5
27.3	RNA.regulation of transcription	23 (15.33%)	2	3	3	0	8	3	0	4
26	misc	10 (6.67%)	1	0	1	4	2	1	0	1
29	protein	9 (6.00%)	2	0	1	1	0	2	0	3
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	8 (5.33%)	1	2	1	0	2	0	0	2
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	8 (5.33%)	2	1	0	4	0	1	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	6 (4.00%)	0	0	1	0	2	1	0	2
26.2	misc.UDP glucosyl and glucoronyl transferases	5 (3.33%)	0	0	0	2	1	1	0	1
27.1	RNA.processing	5 (3.33%)	1	0	0	2	2	0	0	0
27.1.2	RNA.processing.RNA helicase	5 (3.33%)	1	0	0	2	2	0	0	0
28	DNA	5 (3.33%)	0	0	0	3	1	0	0	1
28.99	DNA.unspecified	5 (3.33%)	0	0	0	3	1	0	0	1
33	development	5 (3.33%)	0	1	2	0	0	1	1	0
33.99	development.unspecified	5 (3.33%)	0	1	2	0	0	1	1	0
1	PS	4 (2.67%)	0	0	1	1	0	1	0	1
15	metal handling	4 (2.67%)	0	0	0	0	4	0	0	0
15.2	metal handling.binding, chelation and storage	4 (2.67%)	0	0	0	0	4	0	0	0
17	hormone metabolism	4 (2.67%)	1	1	0	0	1	0	0	1
29.4	protein.postranslational modification	4 (2.67%)	1	0	0	1	0	1	0	1
29.5	protein.degradation	4 (2.67%)	1	0	1	0	0	1	0	1
30	signalling	4 (2.67%)	0	0	0	0	1	0	0	3
30.2	signalling.receptor kinases	4 (2.67%)	0	0	0	0	1	0	0	3
34	transport	4 (2.67%)	0	1	0	0	1	2	0	0
1.1	PS.lightreaction	3 (2.00%)	0	0	1	0	0	1	0	1
3	minor CHO metabolism	3 (2.00%)	0	0	0	0	1	1	0	1
31	cell	3 (2.00%)	0	0	0	3	0	0	0	0
31.2	cell.division	3 (2.00%)	0	0	0	3	0	0	0	0
1.1.1	PS.lightreaction.photosystem II	2 (1.33%)	0	0	1	0	0	0	0	1
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	2 (1.33%)	0	0	1	0	0	0	0	1
3.6	minor CHO metabolism.callose	2 (1.33%)	0	0	0	0	0	1	0	1
10	cell wall	2 (1.33%)	0	0	0	0	0	0	1	1
10.6	cell wall.degradation	2 (1.33%)	0	0	0	0	0	0	1	1
16	secondary metabolism	2 (1.33%)	0	1	0	0	0	0	1	0
17.4	hormone metabolism.cytokinin	2 (1.33%)	1	1	0	0	0	0	0	0
17.4.2	hormone metabolism.cytokinin.signal transduction	2 (1.33%)	1	1	0	0	0	0	0	0
17.7	hormone metabolism.jasmonate	2 (1.33%)	0	0	0	0	1	0	0	1
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	2 (1.33%)	0	0	0	0	1	0	0	1
17.7.1.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	2 (1.33%)	0	0	0	0	1	0	0	1
26.10	misc.cytochrome P450	2 (1.33%)	0	0	1	0	1	0	0	0
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	2 (1.33%)	0	0	0	0	1	1	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	2 (1.33%)	0	1	0	0	1	0	0	0
27.4	RNA.RNA binding	2 (1.33%)	0	0	0	0	0	1	0	1
29.4.1	protein.postranslational modification.kinase	2 (1.33%)	1	0	0	0	0	0	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	2 (1.33%)	0	0	0	0	0	0	0	2
30.2.17	signalling.receptor kinases.DUF 26	2 (1.33%)	0	0	0	0	1	0	0	1
34.13	transport.peptides and oligopeptides	2 (1.33%)	0	0	0	0	1	1	0	0
34.16	transport.ABC transporters and multidrug resistance systems	2 (1.33%)	0	1	0	0	0	1	0	0
1.1.6	PS.lightreaction.NADH DH	1 (0.67%)	0	0	0	0	0	1	0	0
1.3	PS.calvin cycle	1 (0.67%)	0	0	0	1	0	0	0	0
1.3.2	PS.calvin cycle.rubisco small subunit	1 (0.67%)	0	0	0	1	0	0	0	0
2	major CHO metabolism	1 (0.67%)	0	0	0	0	0	0	0	1
6	gluconeogenesis / glyoxylate cycle	1 (0.67%)	0	0	1	0	0	0	0	0
10.6.1	cell wall.degradation.cellulases and beta -1,4-glucanases	1 (0.67%)	0	0	0	0	0	0	1	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.67%)	0	0	0	0	0	0	0	1
11	lipid metabolism	1 (0.67%)	0	0	0	1	0	0	0	0
11.9	lipid metabolism.lipid degradation	1 (0.67%)	0	0	0	1	0	0	0	0
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	1 (0.67%)	0	0	0	1	0	0	0	0
11.9.3.2	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	1 (0.67%)	0	0	0	1	0	0	0	0
13	amino acid metabolism	1 (0.67%)	0	0	0	0	0	0	0	1
13.2	amino acid metabolism.degradation	1 (0.67%)	0	0	0	0	0	0	0	1
13.2.6	amino acid metabolism.degradation.aromatic aa	1 (0.67%)	0	0	0	0	0	0	0	1
13.2.6.2	amino acid metabolism.degradation.aromatic aa.tyrosine	1 (0.67%)	0	0	0	0	0	0	0	1
16.8.1	secondary metabolism.flavonoids.anthocyanins	1 (0.67%)	0	1	0	0	0	0	0	0
16.8.1.21	secondary metabolism.flavonoids.anthocyanins.anthocyanin 5-aromatic acyltransferase	1 (0.67%)	0	1	0	0	0	0	0	0
2.2	major CHO metabolism.degradation	1 (0.67%)	0	0	0	0	0	0	0	1
16.10	secondary metabolism.simple phenols	1 (0.67%)	0	0	0	0	0	0	1	0
16.8	secondary metabolism.flavonoids	1 (0.67%)	0	1	0	0	0	0	0	0
18.3	Co-factor and vitamine metabolism.riboflavin	1 (0.67%)	0	0	0	1	0	0	0	0
2.2.2	major CHO metabolism.degradation.starch	1 (0.67%)	0	0	0	0	0	0	0	1
2.2.2.1	major CHO metabolism.degradation.starch.starch cleavage	1 (0.67%)	0	0	0	0	0	0	0	1
2.2.2.1.2	major CHO metabolism.degradation.starch.starch cleavage.beta amylase	1 (0.67%)	0	0	0	0	0	0	0	1
18	Co-factor and vitamine metabolism	1 (0.67%)	0	0	0	1	0	0	0	0
20	stress	1 (0.67%)	0	0	0	0	1	0	0	0
20.1	stress.biotic	1 (0.67%)	0	0	0	0	1	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.67%)	0	0	0	0	1	0	0	0
26.1	misc.misc2	1 (0.67%)	0	0	0	1	0	0	0	0
26.13	misc.acid and other phosphatases	1 (0.67%)	0	0	0	1	0	0	0	0
26.24	misc.GCN5-related N-acetyltransferase	1 (0.67%)	1	0	0	0	0	0	0	0
27.2	RNA.transcription	1 (0.67%)	0	0	0	0	0	1	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	1 (0.67%)	0	0	0	0	1	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.67%)	0	0	1	0	0	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.67%)	1	0	0	0	0	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.67%)	0	0	0	0	1	0	0	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.67%)	0	1	0	0	0	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	1 (0.67%)	0	0	0	0	0	1	0	0
29.2.1.2.2.23	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23	1 (0.67%)	0	0	1	0	0	0	0	0
29.3	protein.targeting	1 (0.67%)	0	0	0	0	0	0	0	1
29.3.4	protein.targeting.secretory pathway	1 (0.67%)	0	0	0	0	0	0	0	1
29.3.4.2	protein.targeting.secretory pathway.golgi	1 (0.67%)	0	0	0	0	0	0	0	1
29.4.1.51	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase I	1 (0.67%)	1	0	0	0	0	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	1 (0.67%)	0	0	0	0	0	0	0	1
29.5.11	protein.degradation.ubiquitin	1 (0.67%)	0	0	1	0	0	0	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.67%)	0	0	1	0	0	0	0	0
3.2	minor CHO metabolism.trehalose	1 (0.67%)	0	0	0	0	1	0	0	0
3.2.2	minor CHO metabolism.trehalose.TPP	1 (0.67%)	0	0	0	0	1	0	0	0
6.2	gluconeogenesis / glyoxylate cycle.malate synthase	1 (0.67%)	0	0	1	0	0	0	0	0