PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_255
Name: B2GMAUX28
Description: B2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -310 and -301; Contains a TGACGACA sequence which is similar to TGACGT/C sequence found in Ocs, CaMV35S and histone H3 promoter; Contains as-1 motif

#Associated genes: 8
#Associated GO terms: 153

Biological Process
Molecular Function
Cellular Component

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Biological Process (back to top)

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GO	Description	#Associated genes	egr	gma	sly	vvi
GO:0008152	metabolic process	7 (87.50%)	2	2	1	2
GO:0071704	organic substance metabolic process	7 (87.50%)	2	2	1	2
GO:0044238	primary metabolic process	7 (87.50%)	2	2	1	2
GO:0044237	cellular metabolic process	6 (75.00%)	1	2	1	2
GO:0009987	cellular process	6 (75.00%)	1	2	1	2
GO:0009058	biosynthetic process	4 (50.00%)	0	2	1	1
GO:0044249	cellular biosynthetic process	4 (50.00%)	0	2	1	1
GO:0034645	cellular macromolecule biosynthetic process	4 (50.00%)	0	2	1	1
GO:0044260	cellular macromolecule metabolic process	4 (50.00%)	0	2	1	1
GO:0010467	gene expression	4 (50.00%)	0	2	1	1
GO:0009059	macromolecule biosynthetic process	4 (50.00%)	0	2	1	1
GO:0043170	macromolecule metabolic process	4 (50.00%)	0	2	1	1
GO:1901576	organic substance biosynthetic process	4 (50.00%)	0	2	1	1
GO:0044763	single-organism cellular process	3 (37.50%)	1	1	0	1
GO:0044699	single-organism process	3 (37.50%)	1	1	0	1
GO:0032774	RNA biosynthetic process	2 (25.00%)	0	2	0	0
GO:0016070	RNA metabolic process	2 (25.00%)	0	2	0	0
GO:0019438	aromatic compound biosynthetic process	2 (25.00%)	0	2	0	0
GO:0065007	biological regulation	2 (25.00%)	0	2	0	0
GO:0006725	cellular aromatic compound metabolic process	2 (25.00%)	0	2	0	0
GO:0044255	cellular lipid metabolic process	2 (25.00%)	1	0	0	1
GO:0044271	cellular nitrogen compound biosynthetic process	2 (25.00%)	0	2	0	0
GO:0034641	cellular nitrogen compound metabolic process	2 (25.00%)	0	2	0	0
GO:0044267	cellular protein metabolic process	2 (25.00%)	0	0	1	1
GO:0046486	glycerolipid metabolic process	2 (25.00%)	1	0	0	1
GO:0006650	glycerophospholipid metabolic process	2 (25.00%)	1	0	0	1
GO:0018130	heterocycle biosynthetic process	2 (25.00%)	0	2	0	0
GO:0046483	heterocycle metabolic process	2 (25.00%)	0	2	0	0
GO:0006629	lipid metabolic process	2 (25.00%)	1	0	0	1
GO:0030258	lipid modification	2 (25.00%)	1	0	0	1
GO:0006807	nitrogen compound metabolic process	2 (25.00%)	0	2	0	0
GO:0090304	nucleic acid metabolic process	2 (25.00%)	0	2	0	0
GO:0034654	nucleobase-containing compound biosynthetic process	2 (25.00%)	0	2	0	0
GO:0006139	nucleobase-containing compound metabolic process	2 (25.00%)	0	2	0	0
GO:1901362	organic cyclic compound biosynthetic process	2 (25.00%)	0	2	0	0
GO:1901360	organic cyclic compound metabolic process	2 (25.00%)	0	2	0	0
GO:0019637	organophosphate metabolic process	2 (25.00%)	1	0	0	1
GO:0006796	phosphate-containing compound metabolic process	2 (25.00%)	1	0	0	1
GO:0046488	phosphatidylinositol metabolic process	2 (25.00%)	1	0	0	1
GO:0006644	phospholipid metabolic process	2 (25.00%)	1	0	0	1
GO:0006793	phosphorus metabolic process	2 (25.00%)	1	0	0	1
GO:0019538	protein metabolic process	2 (25.00%)	0	0	1	1
GO:2001141	regulation of RNA biosynthetic process	2 (25.00%)	0	2	0	0
GO:0051252	regulation of RNA metabolic process	2 (25.00%)	0	2	0	0
GO:0050789	regulation of biological process	2 (25.00%)	0	2	0	0
GO:0009889	regulation of biosynthetic process	2 (25.00%)	0	2	0	0
GO:0031326	regulation of cellular biosynthetic process	2 (25.00%)	0	2	0	0
GO:2000112	regulation of cellular macromolecule biosynthetic process	2 (25.00%)	0	2	0	0
GO:0031323	regulation of cellular metabolic process	2 (25.00%)	0	2	0	0
GO:0050794	regulation of cellular process	2 (25.00%)	0	2	0	0
GO:0010468	regulation of gene expression	2 (25.00%)	0	2	0	0
GO:0010556	regulation of macromolecule biosynthetic process	2 (25.00%)	0	2	0	0
GO:0060255	regulation of macromolecule metabolic process	2 (25.00%)	0	2	0	0
GO:0019222	regulation of metabolic process	2 (25.00%)	0	2	0	0
GO:0051171	regulation of nitrogen compound metabolic process	2 (25.00%)	0	2	0	0
GO:0019219	regulation of nucleobase-containing compound metabolic process	2 (25.00%)	0	2	0	0
GO:0080090	regulation of primary metabolic process	2 (25.00%)	0	2	0	0
GO:0006355	regulation of transcription, DNA-dependent	2 (25.00%)	0	2	0	0
GO:0044710	single-organism metabolic process	2 (25.00%)	1	0	0	1
GO:0006351	transcription, DNA-templated	2 (25.00%)	0	2	0	0
GO:0006412	translation	2 (25.00%)	0	0	1	1
GO:0009734	auxin mediated signaling pathway	1 (12.50%)	0	1	0	0
GO:0005975	carbohydrate metabolic process	1 (12.50%)	1	0	0	0
GO:0007154	cell communication	1 (12.50%)	0	1	0	0
GO:0071365	cellular response to auxin stimulus	1 (12.50%)	0	1	0	0
GO:0070887	cellular response to chemical stimulus	1 (12.50%)	0	1	0	0
GO:0071495	cellular response to endogenous stimulus	1 (12.50%)	0	1	0	0
GO:0032870	cellular response to hormone stimulus	1 (12.50%)	0	1	0	0
GO:0071310	cellular response to organic substance	1 (12.50%)	0	1	0	0
GO:0051716	cellular response to stimulus	1 (12.50%)	0	1	0	0
GO:0016311	dephosphorylation	1 (12.50%)	1	0	0	0
GO:0009755	hormone-mediated signaling pathway	1 (12.50%)	0	1	0	0
GO:0046834	lipid phosphorylation	1 (12.50%)	0	0	0	1
GO:0046856	phosphatidylinositol dephosphorylation	1 (12.50%)	1	0	0	0
GO:0046854	phosphatidylinositol phosphorylation	1 (12.50%)	0	0	0	1
GO:0046839	phospholipid dephosphorylation	1 (12.50%)	1	0	0	0
GO:0016310	phosphorylation	1 (12.50%)	0	0	0	1
GO:0009733	response to auxin	1 (12.50%)	0	1	0	0
GO:0042221	response to chemical	1 (12.50%)	0	1	0	0
GO:0009719	response to endogenous stimulus	1 (12.50%)	0	1	0	0
GO:0009725	response to hormone	1 (12.50%)	0	1	0	0
GO:0010033	response to organic substance	1 (12.50%)	0	1	0	0
GO:0050896	response to stimulus	1 (12.50%)	0	1	0	0
GO:0007165	signal transduction	1 (12.50%)	0	1	0	0
GO:0023052	signaling	1 (12.50%)	0	1	0	0
GO:0044700	single organism signaling	1 (12.50%)	0	1	0	0

Molecular Function (back to top)

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GO	Description	#Associated genes	egr	gma	sly	vvi
GO:0005488	binding	4 (50.00%)	0	2	1	1
GO:0005515	protein binding	4 (50.00%)	0	2	1	1
GO:0003723	RNA binding	2 (25.00%)	0	0	1	1
GO:0003824	catalytic activity	2 (25.00%)	1	0	0	1
GO:1901363	heterocyclic compound binding	2 (25.00%)	0	0	1	1
GO:0016787	hydrolase activity	2 (25.00%)	1	0	0	1
GO:0003676	nucleic acid binding	2 (25.00%)	0	0	1	1
GO:0097159	organic cyclic compound binding	2 (25.00%)	0	0	1	1
GO:0046983	protein dimerization activity	2 (25.00%)	0	2	0	0
GO:0008374	O-acyltransferase activity	1 (12.50%)	0	0	0	1
GO:0016788	hydrolase activity, acting on ester bonds	1 (12.50%)	0	0	0	1
GO:0016798	hydrolase activity, acting on glycosyl bonds	1 (12.50%)	1	0	0	0
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	1 (12.50%)	1	0	0	0
GO:0008934	inositol monophosphate 1-phosphatase activity	1 (12.50%)	0	0	0	1
GO:0052834	inositol monophosphate phosphatase activity	1 (12.50%)	0	0	0	1
GO:0052745	inositol phosphate phosphatase activity	1 (12.50%)	0	0	0	1
GO:0016791	phosphatase activity	1 (12.50%)	0	0	0	1
GO:0042578	phosphoric ester hydrolase activity	1 (12.50%)	0	0	0	1
GO:0016740	transferase activity	1 (12.50%)	0	0	0	1
GO:0016746	transferase activity, transferring acyl groups	1 (12.50%)	0	0	0	1
GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	1 (12.50%)	0	0	0	1

Cellular Component (back to top)

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GO	Description	#Associated genes	egr	gma	sly	vvi
GO:0005623	cell	6 (75.00%)	1	2	1	2
GO:0044464	cell part	6 (75.00%)	1	2	1	2
GO:0005622	intracellular	6 (75.00%)	1	2	1	2
GO:0043231	intracellular membrane-bounded organelle	6 (75.00%)	1	2	1	2
GO:0043229	intracellular organelle	6 (75.00%)	1	2	1	2
GO:0044424	intracellular part	6 (75.00%)	1	2	1	2
GO:0043227	membrane-bounded organelle	6 (75.00%)	1	2	1	2
GO:0043226	organelle	6 (75.00%)	1	2	1	2
GO:0005737	cytoplasm	4 (50.00%)	1	0	1	2
GO:0044444	cytoplasmic part	3 (37.50%)	0	0	1	2
GO:0044446	intracellular organelle part	3 (37.50%)	0	0	1	2
GO:0005634	nucleus	3 (37.50%)	1	2	0	0
GO:0044422	organelle part	3 (37.50%)	0	0	1	2
GO:0043232	intracellular non-membrane-bounded organelle	2 (25.00%)	0	0	1	1
GO:0070013	intracellular organelle lumen	2 (25.00%)	0	0	1	1
GO:0032991	macromolecular complex	2 (25.00%)	0	0	1	1
GO:0031974	membrane-enclosed lumen	2 (25.00%)	0	0	1	1
GO:0005759	mitochondrial matrix	2 (25.00%)	0	0	1	1
GO:0044429	mitochondrial part	2 (25.00%)	0	0	1	1
GO:0005761	mitochondrial ribosome	2 (25.00%)	0	0	1	1
GO:0005763	mitochondrial small ribosomal subunit	2 (25.00%)	0	0	1	1
GO:0005739	mitochondrion	2 (25.00%)	0	0	1	1
GO:0043228	non-membrane-bounded organelle	2 (25.00%)	0	0	1	1
GO:0000313	organellar ribosome	2 (25.00%)	0	0	1	1
GO:0000314	organellar small ribosomal subunit	2 (25.00%)	0	0	1	1
GO:0043233	organelle lumen	2 (25.00%)	0	0	1	1
GO:0030529	ribonucleoprotein complex	2 (25.00%)	0	0	1	1
GO:0044391	ribosomal subunit	2 (25.00%)	0	0	1	1
GO:0005840	ribosome	2 (25.00%)	0	0	1	1
GO:0015935	small ribosomal subunit	2 (25.00%)	0	0	1	1
GO:0031225	anchored to membrane	1 (12.50%)	1	0	0	0
GO:0046658	anchored to plasma membrane	1 (12.50%)	1	0	0	0
GO:0071944	cell periphery	1 (12.50%)	1	0	0	0
GO:0009507	chloroplast	1 (12.50%)	0	0	0	1
GO:0044434	chloroplast part	1 (12.50%)	0	0	0	1
GO:0009570	chloroplast stroma	1 (12.50%)	0	0	0	1
GO:0005829	cytosol	1 (12.50%)	0	0	0	1
GO:0031224	intrinsic to membrane	1 (12.50%)	1	0	0	0
GO:0031226	intrinsic to plasma membrane	1 (12.50%)	1	0	0	0
GO:0016020	membrane	1 (12.50%)	1	0	0	0
GO:0044425	membrane part	1 (12.50%)	1	0	0	0
GO:0005886	plasma membrane	1 (12.50%)	1	0	0	0
GO:0044459	plasma membrane part	1 (12.50%)	1	0	0	0
GO:0009536	plastid	1 (12.50%)	0	0	0	1
GO:0044435	plastid part	1 (12.50%)	0	0	0	1
GO:0009532	plastid stroma	1 (12.50%)	0	0	0	1