Gene Ontology terms associated with a binding site

Binding site
Motif_211
Name
ABREMOTIFIOSRAB16B
Description
Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other
#Associated genes
19
#Associated GO terms
355
 
Biological Process
Molecular Function
Cellular Component






Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell7 (36.84%)1011310000
GO:0044464cell part7 (36.84%)1011310000
GO:0005622intracellular6 (31.58%)1011210000
GO:0044424intracellular part6 (31.58%)1011210000
GO:0043229intracellular organelle5 (26.32%)1011200000
GO:0043226organelle5 (26.32%)1011200000
GO:0005737cytoplasm4 (21.05%)1010110000
GO:0043231intracellular membrane-bounded organelle4 (21.05%)1011100000
GO:0043227membrane-bounded organelle4 (21.05%)1011100000
GO:0044444cytoplasmic part3 (15.79%)1010100000
GO:0016020membrane3 (15.79%)0000210000
GO:0030054cell junction2 (10.53%)0000020000
GO:0071944cell periphery2 (10.53%)0000110000
GO:0005911cell-cell junction2 (10.53%)0000020000
GO:0009507chloroplast2 (10.53%)0010100000
GO:0043232intracellular non-membrane-bounded organelle2 (10.53%)0000200000
GO:0044446intracellular organelle part2 (10.53%)0000200000
GO:0032991macromolecular complex2 (10.53%)0000110000
GO:0005739mitochondrion2 (10.53%)1010000000
GO:0043228non-membrane-bounded organelle2 (10.53%)0000200000
GO:0044422organelle part2 (10.53%)0000200000
GO:0005886plasma membrane2 (10.53%)0000110000
GO:0009506plasmodesma2 (10.53%)0000020000
GO:0009536plastid2 (10.53%)0010100000
GO:0043234protein complex2 (10.53%)0000110000
GO:0055044symplast2 (10.53%)0000020000
GO:0045177apical part of cell1 (5.26%)0000010000
GO:0009921auxin efflux carrier complex1 (5.26%)0000010000
GO:0045178basal part of cell1 (5.26%)0000010000
GO:0009925basal plasma membrane1 (5.26%)0000010000
GO:0016323basolateral plasma membrane1 (5.26%)0000010000
GO:0005618cell wall1 (5.26%)0000010000
GO:0009941chloroplast envelope1 (5.26%)0000100000
GO:0044434chloroplast part1 (5.26%)0000100000
GO:0009534chloroplast thylakoid1 (5.26%)0000100000
GO:0009535chloroplast thylakoid membrane1 (5.26%)0000100000
GO:0005694chromosome1 (5.26%)0000100000
GO:0000229cytoplasmic chromosome1 (5.26%)0000100000
GO:0044430cytoskeletal part1 (5.26%)0000100000
GO:0005856cytoskeleton1 (5.26%)0000100000
GO:0031975envelope1 (5.26%)0000100000
GO:0030312external encapsulating structure1 (5.26%)0000010000
GO:0016021integral to membrane1 (5.26%)0000010000
GO:0031224intrinsic to membrane1 (5.26%)0000010000
GO:0005871kinesin complex1 (5.26%)0000100000
GO:0044425membrane part1 (5.26%)0000010000
GO:0005875microtubule associated complex1 (5.26%)0000100000
GO:0015630microtubule cytoskeleton1 (5.26%)0000100000
GO:0009295nucleoid1 (5.26%)0000100000
GO:0005634nucleus1 (5.26%)0001000000
GO:0031967organelle envelope1 (5.26%)0000100000
GO:0031984organelle subcompartment1 (5.26%)0000100000
GO:0034357photosynthetic membrane1 (5.26%)0000100000
GO:0009505plant-type cell wall1 (5.26%)0000010000
GO:0044459plasma membrane part1 (5.26%)0000010000
GO:0009508plastid chromosome1 (5.26%)0000100000
GO:0009526plastid envelope1 (5.26%)0000100000
GO:0042646plastid nucleoid1 (5.26%)0000100000
GO:0044435plastid part1 (5.26%)0000100000
GO:0009532plastid stroma1 (5.26%)0000100000
GO:0031976plastid thylakoid1 (5.26%)0000100000
GO:0055035plastid thylakoid membrane1 (5.26%)0000100000
GO:0009579thylakoid1 (5.26%)0000100000
GO:0042651thylakoid membrane1 (5.26%)0000100000
GO:0044436thylakoid part1 (5.26%)0000100000

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding9 (47.37%)0011230101
GO:0003824catalytic activity6 (31.58%)0010211001
GO:1901363heterocyclic compound binding5 (26.32%)0011210000
GO:0097159organic cyclic compound binding5 (26.32%)0011210000
GO:0005515protein binding5 (26.32%)0001110101
GO:0016787hydrolase activity4 (21.05%)0000201001
GO:0003677DNA binding3 (15.79%)0011010000
GO:0043168anion binding3 (15.79%)0000210000
GO:0043167ion binding3 (15.79%)0000210000
GO:0003676nucleic acid binding3 (15.79%)0011010000
GO:0005524ATP binding2 (10.53%)0000200000
GO:0030554adenyl nucleotide binding2 (10.53%)0000200000
GO:0032559adenyl ribonucleotide binding2 (10.53%)0000200000
GO:0097367carbohydrate derivative binding2 (10.53%)0000200000
GO:0016817hydrolase activity, acting on acid anhydrides2 (10.53%)0000200000
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides2 (10.53%)0000200000
GO:0016788hydrolase activity, acting on ester bonds2 (10.53%)0000001001
GO:0001071nucleic acid binding transcription factor activity2 (10.53%)0011000000
GO:0001882nucleoside binding2 (10.53%)0000200000
GO:1901265nucleoside phosphate binding2 (10.53%)0000200000
GO:0017111nucleoside-triphosphatase activity2 (10.53%)0000200000
GO:0000166nucleotide binding2 (10.53%)0000200000
GO:0016791phosphatase activity2 (10.53%)0000001001
GO:0004721phosphoprotein phosphatase activity2 (10.53%)0000001001
GO:0042578phosphoric ester hydrolase activity2 (10.53%)0000001001
GO:0004725protein tyrosine phosphatase activity2 (10.53%)0000001001
GO:0001883purine nucleoside binding2 (10.53%)0000200000
GO:0017076purine nucleotide binding2 (10.53%)0000200000
GO:0032550purine ribonucleoside binding2 (10.53%)0000200000
GO:0035639purine ribonucleoside triphosphate binding2 (10.53%)0000200000
GO:0032555purine ribonucleotide binding2 (10.53%)0000200000
GO:0016462pyrophosphatase activity2 (10.53%)0000200000
GO:0032549ribonucleoside binding2 (10.53%)0000200000
GO:0032553ribonucleotide binding2 (10.53%)0000200000
GO:0003700sequence-specific DNA binding transcription factor activity2 (10.53%)0011000000
GO:0036094small molecule binding2 (10.53%)0000200000
GO:0016887ATPase activity1 (5.26%)0000100000
GO:0003899DNA-directed RNA polymerase activity1 (5.26%)0010000000
GO:0034062RNA polymerase activity1 (5.26%)0010000000
GO:0016830carbon-carbon lyase activity1 (5.26%)0000010000
GO:0016831carboxy-lyase activity1 (5.26%)0000010000
GO:0003682chromatin binding1 (5.26%)0000010000
GO:0048037cofactor binding1 (5.26%)0000010000
GO:0000996core DNA-dependent RNA polymerase binding promoter specificity activity1 (5.26%)0010000000
GO:0000990core RNA polymerase binding transcription factor activity1 (5.26%)0010000000
GO:0008092cytoskeletal protein binding1 (5.26%)0000100000
GO:0019899enzyme binding1 (5.26%)0000000100
GO:0004351glutamate decarboxylase activity1 (5.26%)0000010000
GO:0019900kinase binding1 (5.26%)0000000100
GO:0016829lyase activity1 (5.26%)0000010000
GO:0008017microtubule binding1 (5.26%)0000100000
GO:0003777microtubule motor activity1 (5.26%)0000100000
GO:0003774motor activity1 (5.26%)0000100000
GO:0016779nucleotidyltransferase activity1 (5.26%)0010000000
GO:0045735nutrient reservoir activity1 (5.26%)0000000100
GO:0001053plastid sigma factor activity1 (5.26%)0010000000
GO:0000988protein binding transcription factor activity1 (5.26%)0010000000
GO:0032403protein complex binding1 (5.26%)0000100000
GO:0043424protein histidine kinase binding1 (5.26%)0000000100
GO:0019901protein kinase binding1 (5.26%)0000000100
GO:0030170pyridoxal phosphate binding1 (5.26%)0000010000
GO:0016987sigma factor activity1 (5.26%)0010000000
GO:0016740transferase activity1 (5.26%)0010000000
GO:0016772transferase activity, transferring phosphorus-containing groups1 (5.26%)0010000000
GO:0005215transporter activity1 (5.26%)0000010000
GO:0015631tubulin binding1 (5.26%)0000100000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0009987cellular process10 (52.63%)0011231002
GO:0065007biological regulation7 (36.84%)0011021002
GO:0050789regulation of biological process7 (36.84%)0011021002
GO:0050896response to stimulus7 (36.84%)0011022001
GO:0044699single-organism process7 (36.84%)0010220101
GO:0044237cellular metabolic process6 (31.58%)0011021001
GO:0008152metabolic process6 (31.58%)0011021001
GO:0050794regulation of cellular process5 (26.32%)0011020001
GO:0009628response to abiotic stimulus5 (26.32%)0011021000
GO:0044763single-organism cellular process5 (26.32%)0010220000
GO:0048856anatomical structure development4 (21.05%)0000110101
GO:0032502developmental process4 (21.05%)0000110101
GO:0007275multicellular organismal development4 (21.05%)0000110101
GO:0032501multicellular organismal process4 (21.05%)0000110101
GO:0006807nitrogen compound metabolic process4 (21.05%)0011020000
GO:0071704organic substance metabolic process4 (21.05%)0011020000
GO:0044238primary metabolic process4 (21.05%)0011020000
GO:0006950response to stress4 (21.05%)0001011001
GO:0044707single-multicellular organism process4 (21.05%)0000110101
GO:0044767single-organism developmental process4 (21.05%)0000110101
GO:0032774RNA biosynthetic process3 (15.79%)0011010000
GO:0016070RNA metabolic process3 (15.79%)0011010000
GO:0019438aromatic compound biosynthetic process3 (15.79%)0011010000
GO:0009058biosynthetic process3 (15.79%)0011010000
GO:0006725cellular aromatic compound metabolic process3 (15.79%)0011010000
GO:0044249cellular biosynthetic process3 (15.79%)0011010000
GO:0034645cellular macromolecule biosynthetic process3 (15.79%)0011010000
GO:0044260cellular macromolecule metabolic process3 (15.79%)0011010000
GO:0044271cellular nitrogen compound biosynthetic process3 (15.79%)0011010000
GO:0034641cellular nitrogen compound metabolic process3 (15.79%)0011010000
GO:0010467gene expression3 (15.79%)0011010000
GO:0018130heterocycle biosynthetic process3 (15.79%)0011010000
GO:0046483heterocycle metabolic process3 (15.79%)0011010000
GO:0009059macromolecule biosynthetic process3 (15.79%)0011010000
GO:0043170macromolecule metabolic process3 (15.79%)0011010000
GO:0090304nucleic acid metabolic process3 (15.79%)0011010000
GO:0034654nucleobase-containing compound biosynthetic process3 (15.79%)0011010000
GO:0006139nucleobase-containing compound metabolic process3 (15.79%)0011010000
GO:1901362organic cyclic compound biosynthetic process3 (15.79%)0011010000
GO:1901360organic cyclic compound metabolic process3 (15.79%)0011010000
GO:1901576organic substance biosynthetic process3 (15.79%)0011010000
GO:2001141regulation of RNA biosynthetic process3 (15.79%)0011010000
GO:0051252regulation of RNA metabolic process3 (15.79%)0011010000
GO:0009889regulation of biosynthetic process3 (15.79%)0011010000
GO:0031326regulation of cellular biosynthetic process3 (15.79%)0011010000
GO:2000112regulation of cellular macromolecule biosynthetic process3 (15.79%)0011010000
GO:0031323regulation of cellular metabolic process3 (15.79%)0011010000
GO:0010468regulation of gene expression3 (15.79%)0011010000
GO:0010556regulation of macromolecule biosynthetic process3 (15.79%)0011010000
GO:0060255regulation of macromolecule metabolic process3 (15.79%)0011010000
GO:0019222regulation of metabolic process3 (15.79%)0011010000
GO:0051171regulation of nitrogen compound metabolic process3 (15.79%)0011010000
GO:0019219regulation of nucleobase-containing compound metabolic process3 (15.79%)0011010000
GO:0080090regulation of primary metabolic process3 (15.79%)0011010000
GO:0006355regulation of transcription, DNA-dependent3 (15.79%)0011010000
GO:0042221response to chemical3 (15.79%)0001020000
GO:0009719response to endogenous stimulus3 (15.79%)0001020000
GO:0009725response to hormone3 (15.79%)0001020000
GO:0010033response to organic substance3 (15.79%)0001020000
GO:0006351transcription, DNA-templated3 (15.79%)0011010000
GO:0048646anatomical structure formation involved in morphogenesis2 (10.53%)0000110000
GO:0009653anatomical structure morphogenesis2 (10.53%)0000110000
GO:0016043cellular component organization2 (10.53%)0010100000
GO:0071840cellular component organization or biogenesis2 (10.53%)0010100000
GO:0051716cellular response to stimulus2 (10.53%)0010010000
GO:0006952defense response2 (10.53%)0000001001
GO:0042742defense response to bacterium2 (10.53%)0000001001
GO:0098542defense response to other organism2 (10.53%)0000001001
GO:0016311dephosphorylation2 (10.53%)0000001001
GO:0048229gametophyte development2 (10.53%)0000100100
GO:0048366leaf development2 (10.53%)0000010001
GO:0051704multi-organism process2 (10.53%)0000001001
GO:0006796phosphate-containing compound metabolic process2 (10.53%)0000001001
GO:0006793phosphorus metabolic process2 (10.53%)0000001001
GO:0048827phyllome development2 (10.53%)0000010001
GO:0009555pollen development2 (10.53%)0000100100
GO:0051254positive regulation of RNA metabolic process2 (10.53%)0011000000
GO:0048518positive regulation of biological process2 (10.53%)0011000000
GO:0009891positive regulation of biosynthetic process2 (10.53%)0011000000
GO:0031328positive regulation of cellular biosynthetic process2 (10.53%)0011000000
GO:0031325positive regulation of cellular metabolic process2 (10.53%)0011000000
GO:0048522positive regulation of cellular process2 (10.53%)0011000000
GO:0010628positive regulation of gene expression2 (10.53%)0011000000
GO:0010557positive regulation of macromolecule biosynthetic process2 (10.53%)0011000000
GO:0010604positive regulation of macromolecule metabolic process2 (10.53%)0011000000
GO:0009893positive regulation of metabolic process2 (10.53%)0011000000
GO:0051173positive regulation of nitrogen compound metabolic process2 (10.53%)0011000000
GO:0045935positive regulation of nucleobase-containing compound metabolic process2 (10.53%)0011000000
GO:0045893positive regulation of transcription, DNA-dependent2 (10.53%)0011000000
GO:0031347regulation of defense response2 (10.53%)0000001001
GO:1900424regulation of defense response to bacterium2 (10.53%)0000001001
GO:0043900regulation of multi-organism process2 (10.53%)0000001001
GO:0002831regulation of response to biotic stimulus2 (10.53%)0000001001
GO:0048583regulation of response to stimulus2 (10.53%)0000001001
GO:0080134regulation of response to stress2 (10.53%)0000001001
GO:0009737response to abscisic acid2 (10.53%)0001010000
GO:0097305response to alcohol2 (10.53%)0001010000
GO:0009617response to bacterium2 (10.53%)0000001001
GO:0009607response to biotic stimulus2 (10.53%)0000001001
GO:0009416response to light stimulus2 (10.53%)0010010000
GO:0033993response to lipid2 (10.53%)0001010000
GO:0051707response to other organism2 (10.53%)0000001001
GO:1901700response to oxygen-containing compound2 (10.53%)0001010000
GO:0009314response to radiation2 (10.53%)0010010000
GO:0009639response to red or far red light2 (10.53%)0010010000
GO:0048367shoot system development2 (10.53%)0000010001
GO:0048731system development2 (10.53%)0000010001
GO:0006352DNA-dependent transcription, initiation1 (5.26%)0010000000
GO:0048830adventitious root development1 (5.26%)0000010000
GO:1901605alpha-amino acid metabolic process1 (5.26%)0000010000
GO:0048532anatomical structure arrangement1 (5.26%)0000010000
GO:0009734auxin mediated signaling pathway1 (5.26%)0000010000
GO:0009926auxin polar transport1 (5.26%)0000010000
GO:0060918auxin transport1 (5.26%)0000010000
GO:0019752carboxylic acid metabolic process1 (5.26%)0000010000
GO:0007154cell communication1 (5.26%)0000010000
GO:0008283cell proliferation1 (5.26%)0000000001
GO:0006520cellular amino acid metabolic process1 (5.26%)0000010000
GO:0022607cellular component assembly1 (5.26%)0010000000
GO:0010927cellular component assembly involved in morphogenesis1 (5.26%)0000100000
GO:0044085cellular component biogenesis1 (5.26%)0010000000
GO:0032989cellular component morphogenesis1 (5.26%)0000100000
GO:0006928cellular component movement1 (5.26%)0000100000
GO:0048869cellular developmental process1 (5.26%)0000100000
GO:0034622cellular macromolecular complex assembly1 (5.26%)0010000000
GO:0043623cellular protein complex assembly1 (5.26%)0010000000
GO:0071214cellular response to abiotic stimulus1 (5.26%)0010000000
GO:0071365cellular response to auxin stimulus1 (5.26%)0000010000
GO:0071483cellular response to blue light1 (5.26%)0010000000
GO:0070887cellular response to chemical stimulus1 (5.26%)0000010000
GO:0071495cellular response to endogenous stimulus1 (5.26%)0000010000
GO:0032870cellular response to hormone stimulus1 (5.26%)0000010000
GO:0071482cellular response to light stimulus1 (5.26%)0010000000
GO:0071310cellular response to organic substance1 (5.26%)0000010000
GO:0071478cellular response to radiation1 (5.26%)0010000000
GO:0009658chloroplast organization1 (5.26%)0010000000
GO:0007623circadian rhythm1 (5.26%)0000100000
GO:0048825cotyledon development1 (5.26%)0000010000
GO:0048826cotyledon morphogenesis1 (5.26%)0000010000
GO:0021700developmental maturation1 (5.26%)0000100000
GO:0003006developmental process involved in reproduction1 (5.26%)0000010000
GO:0043648dicarboxylic acid metabolic process1 (5.26%)0000010000
GO:0009790embryo development1 (5.26%)0000010000
GO:0009793embryo development ending in seed dormancy1 (5.26%)0000010000
GO:0048598embryonic morphogenesis1 (5.26%)0000010000
GO:0051234establishment of localization1 (5.26%)0000010000
GO:0045229external encapsulating structure organization1 (5.26%)0000100000
GO:0009908flower development1 (5.26%)0000010000
GO:0010154fruit development1 (5.26%)0000010000
GO:0009448gamma-aminobutyric acid metabolic process1 (5.26%)0000010000
GO:0006091generation of precursor metabolites and energy1 (5.26%)0010000000
GO:0006536glutamate metabolic process1 (5.26%)0000010000
GO:0009064glutamine family amino acid metabolic process1 (5.26%)0000010000
GO:0009630gravitropism1 (5.26%)0000010000
GO:0009914hormone transport1 (5.26%)0000010000
GO:0009755hormone-mediated signaling pathway1 (5.26%)0000010000
GO:0010229inflorescence development1 (5.26%)0000010000
GO:0010338leaf formation1 (5.26%)0000010000
GO:0009965leaf morphogenesis1 (5.26%)0000010000
GO:0010358leaf shaping1 (5.26%)0000010000
GO:0051179localization1 (5.26%)0000010000
GO:0065003macromolecular complex assembly1 (5.26%)0010000000
GO:0043933macromolecular complex subunit organization1 (5.26%)0010000000
GO:0007018microtubule-based movement1 (5.26%)0000100000
GO:0007017microtubule-based process1 (5.26%)0000100000
GO:0032787monocarboxylic acid metabolic process1 (5.26%)0000010000
GO:0048513organ development1 (5.26%)0000010000
GO:0048645organ formation1 (5.26%)0000010000
GO:0009887organ morphogenesis1 (5.26%)0000010000
GO:0006996organelle organization1 (5.26%)0010000000
GO:0006082organic acid metabolic process1 (5.26%)0000010000
GO:1901564organonitrogen compound metabolic process1 (5.26%)0000010000
GO:0043436oxoacid metabolic process1 (5.26%)0000010000
GO:0007389pattern specification process1 (5.26%)0000010000
GO:0009640photomorphogenesis1 (5.26%)0000010000
GO:0015979photosynthesis1 (5.26%)0010000000
GO:0019684photosynthesis, light reaction1 (5.26%)0010000000
GO:0010207photosystem II assembly1 (5.26%)0010000000
GO:0009657plastid organization1 (5.26%)0010000000
GO:0010584pollen exine formation1 (5.26%)0000100000
GO:0010152pollen maturation1 (5.26%)0000100000
GO:0010208pollen wall assembly1 (5.26%)0000100000
GO:0009791post-embryonic development1 (5.26%)0000010000
GO:0009886post-embryonic morphogenesis1 (5.26%)0000010000
GO:0006461protein complex assembly1 (5.26%)0010000000
GO:0070271protein complex biogenesis1 (5.26%)0010000000
GO:0071822protein complex subunit organization1 (5.26%)0010000000
GO:0003002regionalization1 (5.26%)0000010000
GO:0065008regulation of biological quality1 (5.26%)0000010000
GO:0042127regulation of cell proliferation1 (5.26%)0000000001
GO:0010817regulation of hormone levels1 (5.26%)0000010000
GO:0000003reproduction1 (5.26%)0000010000
GO:0022414reproductive process1 (5.26%)0000010000
GO:0048608reproductive structure development1 (5.26%)0000010000
GO:0061458reproductive system development1 (5.26%)0000010000
GO:0009733response to auxin1 (5.26%)0000010000
GO:0009637response to blue light1 (5.26%)0010000000
GO:0009605response to external stimulus1 (5.26%)0000010000
GO:0010218response to far red light1 (5.26%)0010000000
GO:0009629response to gravity1 (5.26%)0000010000
GO:0010035response to inorganic substance1 (5.26%)0001000000
GO:0080167response to karrikin1 (5.26%)0000001000
GO:0006970response to osmotic stress1 (5.26%)0000010000
GO:0010114response to red light1 (5.26%)0010000000
GO:0009651response to salt stress1 (5.26%)0000010000
GO:0009415response to water1 (5.26%)0001000000
GO:0009414response to water deprivation1 (5.26%)0001000000
GO:0009611response to wounding1 (5.26%)0000010000
GO:0048511rhythmic process1 (5.26%)0000100000
GO:0048364root development1 (5.26%)0000010000
GO:0022622root system development1 (5.26%)0000010000
GO:0048316seed development1 (5.26%)0000010000
GO:0010016shoot system morphogenesis1 (5.26%)0000010000
GO:0007165signal transduction1 (5.26%)0000010000
GO:0023052signaling1 (5.26%)0000010000
GO:0044702single organism reproductive process1 (5.26%)0000010000
GO:0044700single organism signaling1 (5.26%)0000010000
GO:0044710single-organism metabolic process1 (5.26%)0000010000
GO:0044765single-organism transport1 (5.26%)0000010000
GO:0044281small molecule metabolic process1 (5.26%)0000010000
GO:0055085transmembrane transport1 (5.26%)0000010000
GO:0006810transport1 (5.26%)0000010000
GO:0009606tropism1 (5.26%)0000010000
GO:0010051xylem and phloem pattern formation1 (5.26%)0000010000