MapMan terms associated with a binding site

Binding site
Motif_198
Name
CARGATCONSENSUS
Description
CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)
#Associated genes
986
#Associated MapMan terms
228

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MapMan Description #Associated genes ath bra cme egr gma ptr ppe sly stu vvi
27RNA239 (24.24%)151801450593519029
27.3RNA.regulation of transcription212 (21.50%)111701446523017025
29protein87 (8.82%)87061620163011
29.4protein.postranslational modification52 (5.27%)57029156206
30signalling51 (5.17%)440311585011
26misc40 (4.06%)23046143107
34transport35 (3.55%)410141050010
33development30 (3.04%)2300694006
27.3.24RNA.regulation of transcription.MADS box transcription factor family28 (2.84%)3406443202
33.99development.unspecified27 (2.74%)2300674005
10cell wall26 (2.64%)3202841303
27.3.22RNA.regulation of transcription.HB,Homeobox transcription factor family26 (2.64%)2401445501
27.3.25RNA.regulation of transcription.MYB domain transcription factor family26 (2.64%)1201861106
29.5protein.degradation23 (2.33%)1002556004
30.2signalling.receptor kinases23 (2.33%)1000544405
31cell21 (2.13%)0003672102
17hormone metabolism19 (1.93%)1001466001
27.3.11RNA.regulation of transcription.C2H2 zinc finger family18 (1.83%)2201461101
27.3.6RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family17 (1.72%)0101345102
16secondary metabolism14 (1.42%)0001442102
27.3.3RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family14 (1.42%)0100071302
29.5.11.4.3.2protein.degradation.ubiquitin.E3.SCF.FBOX14 (1.42%)2400014003
27.4RNA.RNA binding13 (1.32%)2100242101
28DNA13 (1.32%)0102330301
28.1DNA.synthesis/chromatin structure13 (1.32%)0102330301
29.5.11.4.2protein.degradation.ubiquitin.E3.RING13 (1.32%)0001224103
27.3.20RNA.regulation of transcription.G2-like transcription factor family, GARP12 (1.22%)0001740000
29.5.11protein.degradation.ubiquitin12 (1.22%)1000243002
27.3.67RNA.regulation of transcription.putative transcription regulator11 (1.12%)0100121204
30.2.11signalling.receptor kinases.leucine rich repeat XI11 (1.12%)0000312302
10.8cell wall.pectin*esterases10 (1.01%)1201301101
10.8.2cell wall.pectin*esterases.acetyl esterase10 (1.01%)1201301101
11lipid metabolism10 (1.01%)2000212003
20stress10 (1.01%)1000341001
30.5signalling.G-proteins10 (1.01%)1301011003
11.9lipid metabolism.lipid degradation9 (0.91%)2000211003
17.2hormone metabolism.auxin9 (0.91%)0000234000
30.11signalling.light9 (0.91%)0001501101
1PS8 (0.81%)0000120401
1.1PS.lightreaction8 (0.81%)0000120401
27.1RNA.processing8 (0.81%)1000132100
27.3.99RNA.regulation of transcription.unclassified8 (0.81%)0001501001
29.4.1protein.postranslational modification.kinase8 (0.81%)1100130002
30.2.17signalling.receptor kinases.DUF 268 (0.81%)0000222101
31.1cell.organisation8 (0.81%)0001051100
10.6cell wall.degradation7 (0.71%)1001130001
26.12misc.peroxidases7 (0.71%)0001220002
27.3.37RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family7 (0.71%)0001131001
34.3transport.amino acids7 (0.71%)1000221001
34.9transport.metabolite transporters at the mitochondrial membrane7 (0.71%)0100131001
34.99transport.misc7 (0.71%)1001011003
1.1.40PS.lightreaction.cyclic electron flow-chlororespiration6 (0.61%)0000110400
10.6.3cell wall.degradation.pectate lyases and polygalacturonases6 (0.61%)1001120001
16.1secondary metabolism.isoprenoids6 (0.61%)0000220101
16.1.4secondary metabolism.isoprenoids.carotenoids6 (0.61%)0000220101
16.1.4.1secondary metabolism.isoprenoids.carotenoids.phytoene synthase6 (0.61%)0000220101
20.1stress.biotic6 (0.61%)0000240000
26.4misc.beta 1,3 glucan hydrolases6 (0.61%)0100030101
27.2RNA.transcription6 (0.61%)1000101003
27.3.7RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family6 (0.61%)1000311000
29.4.1.57protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII6 (0.61%)0000130002
31.3cell.cycle6 (0.61%)0000410001
31.4cell.vesicle transport6 (0.61%)0001211001
11.9.3lipid metabolism.lipid degradation.lysophospholipases5 (0.51%)1000201001
11.9.3.2lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase5 (0.51%)1000201001
17.1hormone metabolism.abscisic acid5 (0.51%)1001210000
17.1.1.1.10hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase5 (0.51%)1001001002
17.1.2hormone metabolism.abscisic acid.signal transduction5 (0.51%)1001210000
17.2.3hormone metabolism.auxin.induced-regulated-responsive-activated5 (0.51%)0000113000
26.10misc.cytochrome P4505 (0.51%)0001110002
26.13misc.acid and other phosphatases5 (0.51%)1000121000
27.3.10RNA.regulation of transcription.C2C2(Zn) YABBY family5 (0.51%)0000041000
29.2protein.synthesis5 (0.51%)2002000100
29.2.1.1.1.1.12protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S125 (0.51%)0000050000
29.3protein.targeting5 (0.51%)0000202001
30.1signalling.in sugar and nutrient physiology5 (0.51%)1101001001
11.9.2lipid metabolism.lipid degradation.lipases4 (0.41%)1000010002
11.9.2.1lipid metabolism.lipid degradation.lipases.triacylglycerol lipase4 (0.41%)1000010002
16.2secondary metabolism.phenylpropanoids4 (0.41%)0001011001
17.2.2hormone metabolism.auxin.signal transduction4 (0.41%)0000121000
20.2stress.abiotic4 (0.41%)1000101001
21redox4 (0.41%)0000210001
26.2misc.UDP glucosyl and glucoronyl transferases4 (0.41%)0000220000
26.3misc.gluco-, galacto- and mannosidases4 (0.41%)0000021001
27.3.4RNA.regulation of transcription.ARF, Auxin Response Factor family4 (0.41%)0000220000
27.3.44RNA.regulation of transcription.Chromatin Remodeling Factors4 (0.41%)0000012001
27.3.9RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family4 (0.41%)0000202000
29.5.11.3protein.degradation.ubiquitin.E24 (0.41%)0000012001
2major CHO metabolism3 (0.30%)0000201000
5fermentation3 (0.30%)0000300000
9mitochondrial electron transport / ATP synthesis3 (0.30%)0000010200
10.1cell wall.precursor synthesis3 (0.30%)0000200100
10.1.6cell wall.precursor synthesis.GAE3 (0.30%)0000200100
16.2.1secondary metabolism.phenylpropanoids.lignin biosynthesis3 (0.30%)0001001001
2.1major CHO metabolism.synthesis3 (0.30%)0000201000
10.2cell wall.cellulose synthesis3 (0.30%)0000200001
10.5cell wall.cell wall proteins3 (0.30%)1000010100
17.5hormone metabolism.ethylene3 (0.30%)0000020001
17.5.3hormone metabolism.ethylene.induced-regulated-responsive-activated3 (0.30%)0000020001
2.1.2major CHO metabolism.synthesis.starch3 (0.30%)0000201000
26.4.1misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase3 (0.30%)0000020100
27.1.1RNA.processing.splicing3 (0.30%)0000111000
27.1.2RNA.processing.RNA helicase3 (0.30%)0000020100
27.3.26RNA.regulation of transcription.MYB-related transcription factor family3 (0.30%)0200100000
27.3.35RNA.regulation of transcription.bZIP transcription factor family3 (0.30%)0000010101
29.2.1.2.2.38protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L383 (0.30%)0001010001
29.3.1protein.targeting.nucleus3 (0.30%)0000201000
5.10fermentation.aldehyde dehydrogenase3 (0.30%)0000300000
33.3development.squamosa promoter binding like (SPL)3 (0.30%)0000020001
34.16transport.ABC transporters and multidrug resistance systems3 (0.30%)0000011001
34.19transport.Major Intrinsic Proteins3 (0.30%)0000111000
2.1.2.1major CHO metabolism.synthesis.starch.AGPase2 (0.20%)0000200000
8TCA / org transformation2 (0.20%)0000011000
10.5.4cell wall.cell wall proteins.HRGP2 (0.20%)1000000100
16.10secondary metabolism.simple phenols2 (0.20%)0000011000
16.2.1.3secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL2 (0.20%)0000001001
16.7secondary metabolism.wax2 (0.20%)0000200000
20.1.7stress.biotic.PR-proteins2 (0.20%)0000020000
20.2.1stress.abiotic.heat2 (0.20%)0000101000
21.1redox.thioredoxin2 (0.20%)0000200000
21.4redox.glutaredoxins2 (0.20%)0000010001
26.19misc.plastocyanin-like2 (0.20%)0000020000
26.24misc.GCN5-related N-acetyltransferase2 (0.20%)0101000000
27.3.27RNA.regulation of transcription.NAC domain transcription factor family2 (0.20%)0000010100
27.3.32RNA.regulation of transcription.WRKY domain transcription factor family2 (0.20%)0000000002
27.3.50RNA.regulation of transcription.General Transcription2 (0.20%)0000011000
27.3.66RNA.regulation of transcription.Psudo ARR transcription factor family2 (0.20%)1000100000
28.1.1DNA.synthesis/chromatin structure.retrotransposon/transposase2 (0.20%)0000010100
28.1.1.4DNA.synthesis/chromatin structure.retrotransposon/transposase.hat-like transposase2 (0.20%)0000010100
29.2.1.1.1.1.7protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S72 (0.20%)0000020000
29.2.1.2.2.3protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L32 (0.20%)0000001001
29.2.2protein.synthesis.ribosome biogenesis2 (0.20%)1001000000
29.2.2.50protein.synthesis.ribosome biogenesis.BRIX2 (0.20%)1001000000
29.2.3protein.synthesis.initiation2 (0.20%)1000000100
29.3.4protein.targeting.secretory pathway2 (0.20%)0000001001
29.3.4.99protein.targeting.secretory pathway.unspecified2 (0.20%)0000001001
29.5.5protein.degradation.serine protease2 (0.20%)0001001000
29.5.7protein.degradation.metalloprotease2 (0.20%)0001001000
30.2.3signalling.receptor kinases.leucine rich repeat III2 (0.20%)0000000002
9.7mitochondrial electron transport / ATP synthesis.cytochrome c oxidase2 (0.20%)0000000200
30.3signalling.calcium2 (0.20%)1000001000
30.4signalling.phosphinositides2 (0.20%)0000100001
34.12transport.metal2 (0.20%)0000010001
34.15transport.potassium2 (0.20%)1000000001
34.19.2transport.Major Intrinsic Proteins.TIP2 (0.20%)0000101000
34.21transport.calcium2 (0.20%)0000010001
1.1.3PS.lightreaction.cytochrome b6/f1 (0.10%)0000000001
1.1.3.4PS.lightreaction.cytochrome b6/f.apocytochrome f (CYF)1 (0.10%)0000000001
1.1.5PS.lightreaction.other electron carrier (ox/red)1 (0.10%)0000010000
1.1.5.4PS.lightreaction.other electron carrier (ox/red).ferredoxin oxireductase1 (0.10%)0000010000
3minor CHO metabolism1 (0.10%)1000000000
3.2minor CHO metabolism.trehalose1 (0.10%)1000000000
6gluconeogenesis / glyoxylate cycle1 (0.10%)0000001000
10.2.1cell wall.cellulose synthesis.cellulose synthase1 (0.10%)0000100000
10.2.2cell wall.cellulose synthesis.COBRA1 (0.10%)0000100000
10.5.1cell wall.cell wall proteins.AGPs1 (0.10%)0000010000
10.5.1.1cell wall.cell wall proteins.AGPs.AGP1 (0.10%)0000010000
10.6.1cell wall.degradation.cellulases and beta -1,4-glucanases1 (0.10%)0000010000
11.8.1lipid metabolism.exotics (steroids, squalene etc).sphingolipids1 (0.10%)0000001000
11.8.1.3lipid metabolism.exotics (steroids, squalene etc).sphingolipids.ceramide glucosyltransferase1 (0.10%)0000001000
12.2.1N-metabolism.ammonia metabolism.glutamate synthase1 (0.10%)0000000001
6.9gluconeogenesis / glyoxylate cycle.isocitrate lyase1 (0.10%)0000001000
8.1TCA / org transformation.TCA1 (0.10%)0000010000
8.2TCA / org transformation.other organic acid transformations1 (0.10%)0000001000
9.1mitochondrial electron transport / ATP synthesis.NADH-DH1 (0.10%)0000010000
11.8lipid metabolism.exotics(steroids, squalene etc)1 (0.10%)0000001000
12N-metabolism1 (0.10%)0000000001
12.2N-metabolism.ammonia metabolism1 (0.10%)0000000001
15metal handling1 (0.10%)0000001000
15.2metal handling.binding, chelation and storage1 (0.10%)0000001000
16.2.1.10secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD1 (0.10%)0001000000
17.4hormone metabolism.cytokinin1 (0.10%)0000001000
17.4.1hormone metabolism.cytokinin.synthesis-degradation1 (0.10%)0000001000
17.7hormone metabolism.jasmonate1 (0.10%)0000001000
17.7.1hormone metabolism.jasmonate.synthesis-degradation1 (0.10%)0000001000
17.7.1.2hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase1 (0.10%)0000001000
2.1.2.2major CHO metabolism.synthesis.starch.starch synthase1 (0.10%)0000001000
20.1.3stress.biotic.signalling1 (0.10%)0000100000
20.1.3.1stress.biotic.signalling.MLO-like1 (0.10%)0000100000
20.2.99stress.abiotic.unspecified1 (0.10%)0000000001
23nucleotide metabolism1 (0.10%)0000000001
23.4nucleotide metabolism.phosphotransfer and pyrophosphatases1 (0.10%)0000000001
23.4.3nucleotide metabolism.phosphotransfer and pyrophosphatases.uridylate kinase1 (0.10%)0000000001
26.1misc.misc21 (0.10%)0000000001
26.16misc.myrosinases-lectin-jacalin1 (0.10%)0100000000
26.17misc.dynamin1 (0.10%)0000001000
26.22misc.short chain dehydrogenase/reductase (SDR)1 (0.10%)1000000000
26.3.2misc.gluco-, galacto- and mannosidases.beta-galactosidase1 (0.10%)0000010000
26.3.4misc.gluco-, galacto- and mannosidases.endoglucanase1 (0.10%)0000010000
26.3.5misc.gluco-, galacto- and mannosidases.glycosyl hydrolase family 51 (0.10%)0000001000
26.8misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases1 (0.10%)0001000000
27.3.12RNA.regulation of transcription.C3H zinc finger family1 (0.10%)0000000001
27.3.23RNA.regulation of transcription.HSF,Heat-shock transcription factor family1 (0.10%)0000001000
27.3.34RNA.regulation of transcription.Orphan family1 (0.10%)0001000000
27.3.39RNA.regulation of transcription.AtSR Transcription Factor family1 (0.10%)0000001000
27.3.5RNA.regulation of transcription.ARR1 (0.10%)1000000000
27.3.59RNA.regulation of transcription.Methyl binding domain proteins1 (0.10%)0000001000
28.1.3DNA.synthesis/chromatin structure.histone1 (0.10%)0000000100
29.2.1.1.1.1.2protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S21 (0.10%)0000010000
29.2.1.1.1.2.2protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L21 (0.10%)0000010000
29.2.1.2.1.7protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S71 (0.10%)0000100000
29.2.1.2.1.9protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S91 (0.10%)0000001000
29.2.1.2.2.34protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L341 (0.10%)0000001000
29.2.1.2.2.80protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P01 (0.10%)0000000100
29.2.4protein.synthesis.elongation1 (0.10%)0001000000
29.5.1protein.degradation.subtilases1 (0.10%)0000001000
29.5.11.1protein.degradation.ubiquitin.ubiquitin1 (0.10%)0000010000
29.5.11.20protein.degradation.ubiquitin.proteasom1 (0.10%)0000010000
29.5.11.4.5.1protein.degradation.ubiquitin.E3.BTB/POZ Cullin3.Cullin31 (0.10%)0000000001
29.5.11.5protein.degradation.ubiquitin.ubiquitin protease1 (0.10%)0000000001
29.5.3protein.degradation.cysteine protease1 (0.10%)0000000001
29.5.9protein.degradation.AAA type1 (0.10%)0000010000
29.6protein.folding1 (0.10%)0000001000
29.7protein.glycosylation1 (0.10%)0000001000
29.7.9protein.glycosylation.beta-1,2-xylosyltransferase(beta-1,2-XylT)1 (0.10%)0000001000
3.2.3minor CHO metabolism.trehalose.potential TPS/TPP1 (0.10%)1000000000
30.2.20signalling.receptor kinases.wheat LRK10 like1 (0.10%)0000010000
30.2.5signalling.receptor kinases.leucine rich repeat V1 (0.10%)1000000000
30.4.1signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase1 (0.10%)0000000001
30.4.5signalling.phosphinositides.inositol-1,3,4-trisphosphate 5/6-kinase1 (0.10%)0000100000
31.2cell.division1 (0.10%)0001000000
34.1transport.p- and v-ATPases1 (0.10%)0000000001
34.19.3transport.Major Intrinsic Proteins.NIP1 (0.10%)0000010000
34.2transport.sugars1 (0.10%)1000000000
8.1.1TCA / org transformation.TCA.pyruvate DH1 (0.10%)0000010000
8.1.1.3TCA / org transformation.TCA.pyruvate DH.E31 (0.10%)0000010000
8.2.11TCA / org transformation.other organic acid transformatons.atp-citrate lyase1 (0.10%)0000001000
9.1.2mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear1 (0.10%)0000010000