PLAZA 3.0 Dicots : Binding Sites

InterPro domains associated with a binding site

Binding site: Motif_18
Name: 5659BOXLELAT5659
Description: 56/59 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)56 and LAT59 promoters; Found in -103 to -94 in LAT56 and in -114 to -105 in LAT59; Involved in modulating the activity of the LAT gene promoters in pollen

#Associated genes: 107
#Associated InterPro terms: 179

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InterPro	Description	#Associated genes	ath	bra	cme	egr	gma	ptr	ppe	sly	stu	vvi
IPR005202	Transcription factor GRAS	9 (8.41%)	0	0	1	0	1	0	1	1	2	3
IPR012677	Nucleotide-binding, alpha-beta plait	6 (5.61%)	1	0	0	1	1	1	0	1	0	1
IPR011009	Protein kinase-like domain	6 (5.61%)	0	0	1	0	3	0	0	0	0	2
IPR000719	Protein kinase domain	5 (4.67%)	0	0	1	0	3	0	0	0	0	1
IPR016024	Armadillo-type fold	4 (3.74%)	1	0	0	0	0	0	0	0	0	3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	4 (3.74%)	0	0	0	0	1	2	1	0	0	0
IPR011989	Armadillo-like helical	3 (2.80%)	1	0	0	0	0	0	0	0	0	2
IPR005175	Domain of unknown function DUF296	3 (2.80%)	0	0	0	0	3	0	0	0	0	0
IPR009057	Homeodomain-like	3 (2.80%)	0	0	0	0	2	1	0	0	0	0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	3 (2.80%)	0	0	1	0	2	0	0	0	0	0
IPR000504	RNA recognition motif domain	3 (2.80%)	1	0	0	0	1	0	0	0	0	1
IPR020478	AT hook-like	2 (1.87%)	0	0	0	0	2	0	0	0	0	0
IPR008972	Cupredoxin	2 (1.87%)	0	0	0	0	0	0	1	1	0	0
IPR018247	EF-Hand 1, calcium-binding site	2 (1.87%)	0	0	0	0	0	2	0	0	0	0
IPR002048	EF-hand domain	2 (1.87%)	0	0	0	0	0	2	0	0	0	0
IPR011992	EF-hand domain pair	2 (1.87%)	0	0	0	0	0	2	0	0	0	0
IPR007581	Endonuclease V	2 (1.87%)	0	0	0	1	1	0	0	0	0	0
IPR008629	GUN4-like	2 (1.87%)	0	0	0	0	0	2	0	0	0	0
IPR001611	Leucine-rich repeat	2 (1.87%)	0	0	0	1	1	0	0	0	0	0
IPR003591	Leucine-rich repeat, typical subtype	2 (1.87%)	0	0	0	1	1	0	0	0	0	0
IPR006447	Myb domain, plants	2 (1.87%)	0	0	0	0	1	1	0	0	0	0
IPR005516	Remorin, C-terminal	2 (1.87%)	0	0	0	0	0	1	1	0	0	0
IPR001005	SANT/Myb domain	2 (1.87%)	0	0	0	0	1	1	0	0	0	0
IPR002290	Serine/threonine- / dual specificity protein kinase, catalytic domain	2 (1.87%)	0	0	1	0	0	0	0	0	0	1
IPR008271	Serine/threonine-protein kinase, active site	2 (1.87%)	0	0	1	0	0	0	0	0	0	1
IPR008974	TRAF-like	2 (1.87%)	0	0	0	0	0	1	0	0	1	0
IPR012946	X8	2 (1.87%)	0	0	0	0	0	0	1	0	0	1
IPR013083	Zinc finger, RING/FYVE/PHD-type	2 (1.87%)	1	0	0	0	0	1	0	0	0	0
IPR019538	26S proteasome non-ATPase regulatory subunit 5	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR001041	2Fe-2S ferredoxin-type domain	1 (0.93%)	0	1	0	0	0	0	0	0	0	0
IPR003593	AAA+ ATPase domain	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR002912	ACT domain	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR016192	APOBEC/CMP deaminase, zinc-binding	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR015519	ATM/Tel1	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR003959	ATPase, AAA-type, core	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR003311	AUX/IAA protein	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR001030	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR015931	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR015934	Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR015937	Aconitase/isopropylmalate dehydratase	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR001055	Adrenodoxin	1 (0.93%)	0	1	0	0	0	0	0	0	0	0
IPR018298	Adrenodoxin, iron-sulphur binding site	1 (0.93%)	0	1	0	0	0	0	0	0	0	0
IPR003609	Apple-like	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR011525	Aux/IAA-ARF-dimerisation	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR010525	Auxin response factor	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR003340	B3 DNA binding domain	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR001357	BRCT domain	1 (0.93%)	0	1	0	0	0	0	0	0	0	0
IPR012675	Beta-grasp domain	1 (0.93%)	0	1	0	0	0	0	0	0	0	0
IPR001480	Bulb-type lectin domain	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR000008	C2 domain	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR002125	CMP/dCMP deaminase, zinc-binding	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR007590	CWC16 protein	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR013320	Concanavalin A-like lectin/glucanase, subgroup	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR012864	Cysteamine dioxygenase	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR016193	Cytidine deaminase-like	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR011759	Cytochrome C oxidase subunit II, transmembrane domain	1 (0.93%)	0	0	0	0	0	0	0	1	0	0
IPR001128	Cytochrome P450	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR002429	Cytochrome c oxidase subunit II C-terminal	1 (0.93%)	0	0	0	0	0	0	0	1	0	0
IPR000922	D-galactoside/L-rhamnose binding SUEL lectin domain	1 (0.93%)	0	0	0	1	0	0	0	0	0	0
IPR003840	DNA helicase	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR010285	DNA helicase Pif1	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR004589	DNA helicase, ATP-dependent, RecQ type	1 (0.93%)	0	0	1	0	0	0	0	0	0	0
IPR017961	DNA polymerase, Y-family, little finger domain	1 (0.93%)	0	1	0	0	0	0	0	0	0	0
IPR003657	DNA-binding WRKY	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR015300	DNA-binding pseudobarrel domain	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR001126	DNA-repair protein, UmuC-like	1 (0.93%)	0	1	0	0	0	0	0	0	0	0
IPR017963	DNA-repair protein, UmuC-like, N-terminal	1 (0.93%)	0	1	0	0	0	0	0	0	0	0
IPR013989	Development/cell death domain	1 (0.93%)	0	0	1	0	0	0	0	0	0	0
IPR001623	DnaJ domain	1 (0.93%)	0	0	0	0	0	0	0	0	1	0
IPR006868	Domain of unknown function DUF630	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR006867	Domain of unknown function DUF632	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR006936	Domain of unknown function DUF640	1 (0.93%)	1	0	0	0	0	0	0	0	0	0
IPR000340	Dual specificity phosphatase, catalytic domain	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR020422	Dual specificity phosphatase, subgroup, catalytic domain	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR001372	Dynein light chain, type 1/2	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR019763	Dynein light chain, type 1/2, conserved site	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR004162	E3 ubiquitin-protein ligase SINA like	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR019448	EEIG1/EHBP1 N-terminal domain	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR004342	EXS, C-terminal	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR005135	Endonuclease/exonuclease/phosphatase	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR019542	Enhancer of polycomb-like, N-terminal	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR000742	Epidermal growth factor-like domain	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR006055	Exonuclease	1 (0.93%)	0	0	0	0	0	0	0	0	1	0
IPR013520	Exonuclease, RNase T/DNA polymerase III	1 (0.93%)	0	0	0	0	0	0	0	0	1	0
IPR008979	Galactose-binding domain-like	1 (0.93%)	0	0	0	1	0	0	0	0	0	0
IPR014978	Glutamine-Leucine-Glutamine, QLQ	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR013781	Glycoside hydrolase, catalytic domain	1 (0.93%)	0	0	0	1	0	0	0	0	0	0
IPR001944	Glycoside hydrolase, family 35	1 (0.93%)	0	0	0	1	0	0	0	0	0	0
IPR019801	Glycoside hydrolase, family 35, conserved site	1 (0.93%)	0	0	0	1	0	0	0	0	0	0
IPR017853	Glycoside hydrolase, superfamily	1 (0.93%)	0	0	0	1	0	0	0	0	0	0
IPR002495	Glycosyl transferase, family 8	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR010255	Haem peroxidase	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR002016	Haem peroxidase, plant/fungal/bacterial	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR001650	Helicase, C-terminal	1 (0.93%)	0	0	1	0	0	0	0	0	0	0
IPR014001	Helicase, superfamily 1/2, ATP-binding domain	1 (0.93%)	0	0	1	0	0	0	0	0	0	0
IPR000558	Histone H2B	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR007125	Histone core	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR009072	Histone-fold	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR008422	Homeobox KN domain	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR001356	Homeobox domain	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR018619	Hyccin	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR024729	ICP0-binding domain of Ubiquitin-specific protease 7	1 (0.93%)	0	0	0	0	0	0	0	0	1	0
IPR000300	Inositol polyphosphate-related phosphatase	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR013210	Leucine-rich repeat-containing N-terminal, type 2	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR018392	LysM domain	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR002083	MATH	1 (0.93%)	0	0	0	0	0	0	0	0	1	0
IPR013216	Methyltransferase type 11	1 (0.93%)	1	0	0	0	0	0	0	0	0	0
IPR023395	Mitochondrial carrier domain	1 (0.93%)	0	1	0	0	0	0	0	0	0	0
IPR002067	Mitochondrial carrier protein	1 (0.93%)	0	1	0	0	0	0	0	0	0	0
IPR018108	Mitochondrial substrate/solute carrier	1 (0.93%)	0	1	0	0	0	0	0	0	0	0
IPR005111	MoeA, C-terminal, domain IV	1 (0.93%)	1	0	0	0	0	0	0	0	0	0
IPR005110	MoeA, N-terminal and linker domain	1 (0.93%)	1	0	0	0	0	0	0	0	0	0
IPR008284	Molybdenum cofactor biosynthesis, conserved site	1 (0.93%)	1	0	0	0	0	0	0	0	0	0
IPR020817	Molybdenum cofactor synthesis	1 (0.93%)	1	0	0	0	0	0	0	0	0	0
IPR001453	Molybdopterin binding domain	1 (0.93%)	1	0	0	0	0	0	0	0	0	0
IPR001117	Multicopper oxidase, type 1	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR011706	Multicopper oxidase, type 2	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR011707	Multicopper oxidase, type 3	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR017930	Myb domain	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR003441	NAC domain	1 (0.93%)	0	0	0	1	0	0	0	0	0	0
IPR016040	NAD(P)-binding domain	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR001509	NAD-dependent epimerase/dehydratase	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	1 (0.93%)	1	0	0	0	0	0	0	0	0	0
IPR004142	Ndr	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR012940	Nucleic acid binding NABP	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR008089	Nucleotide sugar epimerase	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR013227	PAN-2 domain	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR014009	PIK-related kinase	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR003151	PIK-related kinase, FAT	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR003152	PIK-related kinase, FATC	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR006563	POX domain	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR006501	Pectinesterase inhibitor domain	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR019794	Peroxidase, active site	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR019793	Peroxidases heam-ligand binding site	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR000403	Phosphatidylinositol 3-/4-kinase, catalytic domain	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR018936	Phosphatidylinositol 3/4-kinase, conserved site	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR021099	Plant organelle RNA recognition domain	1 (0.93%)	0	0	0	0	0	0	0	1	0	0
IPR000823	Plant peroxidase	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR015511	Pollen specific protein SF21	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR012317	Poly(ADP-ribose) polymerase, catalytic domain	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR017441	Protein kinase, ATP binding site	1 (0.93%)	0	0	1	0	0	0	0	0	0	0
IPR009829	Protein of unknown function DUF1395	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR007750	Protein of unknown function DUF674	1 (0.93%)	0	0	0	1	0	0	0	0	0	0
IPR015655	Protein phosphatase 2C	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR001932	Protein phosphatase 2C (PP2C)-like domain	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR000222	Protein phosphatase 2C, manganese/magnesium aspartate binding site	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR016130	Protein-tyrosine phosphatase, active site	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR000387	Protein-tyrosine/Dual specificity phosphatase	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR001313	Pumilio RNA-binding repeat	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR004159	Putative S-adenosyl-L-methionine-dependent methyltransferase	1 (0.93%)	0	0	0	0	0	0	0	1	0	0
IPR007080	RNA polymerase Rpb1, domain 1	1 (0.93%)	0	0	0	0	0	0	0	1	0	0
IPR022003	RST domain of plant C-terminal	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR005120	Regulator of nonsense-mediated decay, UPF3	1 (0.93%)	0	0	0	0	0	0	0	1	0	0
IPR005518	Remorin, N-terminal	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR012337	Ribonuclease H-like domain	1 (0.93%)	0	0	0	0	0	0	0	0	1	0
IPR011051	RmlC-like cupin domain	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR014710	RmlC-like jelly roll fold	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR000858	S-locus glycoprotein	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR013323	SIAH-type domain	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR004331	SPX, N-terminal	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR018121	Seven-in-absentia protein, TRAF-like domain	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR000727	Target SNARE coiled-coil domain	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR001440	Tetratricopeptide TPR1	1 (0.93%)	0	0	1	0	0	0	0	0	0	0
IPR019734	Tetratricopeptide repeat	1 (0.93%)	0	0	1	0	0	0	0	0	0	0
IPR013026	Tetratricopeptide repeat-containing domain	1 (0.93%)	0	0	1	0	0	0	0	0	0	0
IPR011990	Tetratricopeptide-like helical	1 (0.93%)	0	0	1	0	0	0	0	0	0	0
IPR002999	Tudor domain	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR008266	Tyrosine-protein kinase, active site	1 (0.93%)	0	0	0	0	1	0	0	0	0	0
IPR003613	U box domain	1 (0.93%)	1	0	0	0	0	0	0	0	0	0
IPR027933	Ubiquitin-like domain	1 (0.93%)	0	0	0	0	0	0	0	0	1	0
IPR006702	Uncharacterised protein family UPF0497, trans-membrane plant	1 (0.93%)	0	0	0	1	0	0	0	0	0	0
IPR007541	Uncharacterised protein family, basic secretory protein	1 (0.93%)	0	0	0	0	0	0	1	0	0	0
IPR011030	Vitellinogen, superhelical	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR014977	WRC	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR004170	WWE domain	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR025287	Wall-associated receptor kinase galacturonan-binding domain	1 (0.93%)	0	0	0	0	0	0	0	0	0	1
IPR010666	Zinc finger, GRF-type	1 (0.93%)	0	0	0	0	0	0	0	0	1	0
IPR001841	Zinc finger, RING-type	1 (0.93%)	0	0	0	0	0	1	0	0	0	0
IPR013010	Zinc finger, SIAH-type	1 (0.93%)	0	0	0	0	0	1	0	0	0	0