Gene Ontology terms associated with a binding site

Binding site
Motif_161
Name
SPL7;SPL4
Description
A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors
#Associated genes
26
#Associated GO terms
338
 
Biological Process
Molecular Function
Cellular Component






Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0008152metabolic process15 (57.69%)0220122312
GO:0009987cellular process14 (53.85%)0320122202
GO:0044237cellular metabolic process12 (46.15%)0210122202
GO:0071704organic substance metabolic process12 (46.15%)0220112211
GO:0044699single-organism process11 (42.31%)0320121002
GO:0044763single-organism cellular process10 (38.46%)0320111002
GO:0044238primary metabolic process9 (34.62%)0020012211
GO:0065007biological regulation6 (23.08%)0200112000
GO:0050789regulation of biological process6 (23.08%)0200112000
GO:0050794regulation of cellular process6 (23.08%)0200112000
GO:0006725cellular aromatic compound metabolic process5 (19.23%)0200111000
GO:0044260cellular macromolecule metabolic process5 (19.23%)0000012101
GO:0032502developmental process5 (19.23%)0110111000
GO:0043170macromolecule metabolic process5 (19.23%)0000012101
GO:1901360organic cyclic compound metabolic process5 (19.23%)0200111000
GO:0031323regulation of cellular metabolic process5 (19.23%)0200111000
GO:0019222regulation of metabolic process5 (19.23%)0200111000
GO:0050896response to stimulus5 (19.23%)0200101001
GO:0044767single-organism developmental process5 (19.23%)0110111000
GO:0044710single-organism metabolic process5 (19.23%)0210100001
GO:0048856anatomical structure development4 (15.38%)0100111000
GO:0016043cellular component organization4 (15.38%)0010101001
GO:0071840cellular component organization or biogenesis4 (15.38%)0010101001
GO:0032501multicellular organismal process4 (15.38%)0110011000
GO:0006796phosphate-containing compound metabolic process4 (15.38%)0010001101
GO:0006793phosphorus metabolic process4 (15.38%)0010001101
GO:0019438aromatic compound biosynthetic process3 (11.54%)0000111000
GO:0009058biosynthetic process3 (11.54%)0000111000
GO:0005975carbohydrate metabolic process3 (11.54%)0010000110
GO:0016049cell growth3 (11.54%)0010101000
GO:0044249cellular biosynthetic process3 (11.54%)0000111000
GO:0048869cellular developmental process3 (11.54%)0100101000
GO:0051641cellular localization3 (11.54%)0010010001
GO:0070727cellular macromolecule localization3 (11.54%)0010010001
GO:0044271cellular nitrogen compound biosynthetic process3 (11.54%)0000111000
GO:0034641cellular nitrogen compound metabolic process3 (11.54%)0000111000
GO:0034613cellular protein localization3 (11.54%)0010010001
GO:0044267cellular protein metabolic process3 (11.54%)0000001101
GO:0006464cellular protein modification process3 (11.54%)0000001101
GO:0051234establishment of localization3 (11.54%)0010010001
GO:0051649establishment of localization in cell3 (11.54%)0010010001
GO:0045184establishment of protein localization3 (11.54%)0010010001
GO:0040007growth3 (11.54%)0010101000
GO:0018130heterocycle biosynthetic process3 (11.54%)0000111000
GO:0046483heterocycle metabolic process3 (11.54%)0000111000
GO:0006886intracellular protein transport3 (11.54%)0010010001
GO:0046907intracellular transport3 (11.54%)0010010001
GO:0051179localization3 (11.54%)0010010001
GO:0033036macromolecule localization3 (11.54%)0010010001
GO:0043412macromolecule modification3 (11.54%)0000001101
GO:0007275multicellular organismal development3 (11.54%)0110010000
GO:0006807nitrogen compound metabolic process3 (11.54%)0000111000
GO:1901362organic cyclic compound biosynthetic process3 (11.54%)0000111000
GO:1901576organic substance biosynthetic process3 (11.54%)0000111000
GO:0071702organic substance transport3 (11.54%)0010010001
GO:0016310phosphorylation3 (11.54%)0000001101
GO:0015979photosynthesis3 (11.54%)0000010101
GO:0008104protein localization3 (11.54%)0010010001
GO:0019538protein metabolic process3 (11.54%)0000001101
GO:0036211protein modification process3 (11.54%)0000001101
GO:0006468protein phosphorylation3 (11.54%)0000001101
GO:0015031protein transport3 (11.54%)0010010001
GO:0009889regulation of biosynthetic process3 (11.54%)0000111000
GO:0031326regulation of cellular biosynthetic process3 (11.54%)0000111000
GO:0051171regulation of nitrogen compound metabolic process3 (11.54%)0000111000
GO:0009628response to abiotic stimulus3 (11.54%)0200100000
GO:0042221response to chemical3 (11.54%)0200100000
GO:0044707single-multicellular organism process3 (11.54%)0110010000
GO:0006810transport3 (11.54%)0010010001
GO:0032774RNA biosynthetic process2 (7.69%)0000011000
GO:0016070RNA metabolic process2 (7.69%)0000011000
GO:0009653anatomical structure morphogenesis2 (7.69%)0000101000
GO:0042537benzene-containing compound metabolic process2 (7.69%)0200000000
GO:0019752carboxylic acid metabolic process2 (7.69%)0200000000
GO:0007154cell communication2 (7.69%)0000101000
GO:0030154cell differentiation2 (7.69%)0100001000
GO:0000902cell morphogenesis2 (7.69%)0000101000
GO:0032989cellular component morphogenesis2 (7.69%)0000101000
GO:0042180cellular ketone metabolic process2 (7.69%)0200000000
GO:0034645cellular macromolecule biosynthetic process2 (7.69%)0000011000
GO:0051716cellular response to stimulus2 (7.69%)0000101000
GO:0048589developmental growth2 (7.69%)0000101000
GO:0060560developmental growth involved in morphogenesis2 (7.69%)0000101000
GO:0003006developmental process involved in reproduction2 (7.69%)0100001000
GO:0010467gene expression2 (7.69%)0000011000
GO:0009059macromolecule biosynthetic process2 (7.69%)0000011000
GO:0032787monocarboxylic acid metabolic process2 (7.69%)0200000000
GO:0090304nucleic acid metabolic process2 (7.69%)0000011000
GO:0034654nucleobase-containing compound biosynthetic process2 (7.69%)0000011000
GO:0006139nucleobase-containing compound metabolic process2 (7.69%)0000011000
GO:0006082organic acid metabolic process2 (7.69%)0200000000
GO:1901615organic hydroxy compound metabolic process2 (7.69%)0200000000
GO:0043436oxoacid metabolic process2 (7.69%)0200000000
GO:2001141regulation of RNA biosynthetic process2 (7.69%)0000011000
GO:0051252regulation of RNA metabolic process2 (7.69%)0000011000
GO:0010565regulation of cellular ketone metabolic process2 (7.69%)0200000000
GO:2000112regulation of cellular macromolecule biosynthetic process2 (7.69%)0000011000
GO:0010468regulation of gene expression2 (7.69%)0000011000
GO:0010556regulation of macromolecule biosynthetic process2 (7.69%)0000011000
GO:0060255regulation of macromolecule metabolic process2 (7.69%)0000011000
GO:0019219regulation of nucleobase-containing compound metabolic process2 (7.69%)0000011000
GO:0080090regulation of primary metabolic process2 (7.69%)0000011000
GO:0010337regulation of salicylic acid metabolic process2 (7.69%)0200000000
GO:0006355regulation of transcription, DNA-dependent2 (7.69%)0000011000
GO:0000003reproduction2 (7.69%)0100001000
GO:0022414reproductive process2 (7.69%)0100001000
GO:0010035response to inorganic substance2 (7.69%)0200000000
GO:0006970response to osmotic stress2 (7.69%)0200000000
GO:1901700response to oxygen-containing compound2 (7.69%)0200000000
GO:0009651response to salt stress2 (7.69%)0200000000
GO:0006950response to stress2 (7.69%)0200000000
GO:0009415response to water2 (7.69%)0200000000
GO:0009414response to water deprivation2 (7.69%)0200000000
GO:0009696salicylic acid metabolic process2 (7.69%)0200000000
GO:0048367shoot system development2 (7.69%)0100010000
GO:0007165signal transduction2 (7.69%)0000101000
GO:0023052signaling2 (7.69%)0000101000
GO:0044702single organism reproductive process2 (7.69%)0100001000
GO:0044700single organism signaling2 (7.69%)0000101000
GO:0044281small molecule metabolic process2 (7.69%)0200000000
GO:0048731system development2 (7.69%)0100010000
GO:0006351transcription, DNA-templated2 (7.69%)0000011000
GO:0009826unidimensional cell growth2 (7.69%)0000101000
GO:0016192vesicle-mediated transport2 (7.69%)0000010001
GO:0006505GPI anchor metabolic process1 (3.85%)0010000000
GO:0009838abscission1 (3.85%)0010000000
GO:0010252auxin homeostasis1 (3.85%)0000100000
GO:0009734auxin mediated signaling pathway1 (3.85%)0000100000
GO:0010120camalexin biosynthetic process1 (3.85%)0000100000
GO:0052317camalexin metabolic process1 (3.85%)0000100000
GO:1901135carbohydrate derivative metabolic process1 (3.85%)0010000000
GO:0048468cell development1 (3.85%)0000001000
GO:0000904cell morphogenesis involved in differentiation1 (3.85%)0000001000
GO:0009932cell tip growth1 (3.85%)0000001000
GO:0044277cell wall disassembly1 (3.85%)0010000000
GO:0042545cell wall modification1 (3.85%)0010000000
GO:0009830cell wall modification involved in abscission1 (3.85%)0010000000
GO:0042547cell wall modification involved in multidimensional cell growth1 (3.85%)0010000000
GO:0071555cell wall organization1 (3.85%)0010000000
GO:0071554cell wall organization or biogenesis1 (3.85%)0010000000
GO:0022411cellular component disassembly1 (3.85%)0010000000
GO:0044255cellular lipid metabolic process1 (3.85%)0010000000
GO:0048610cellular process involved in reproduction1 (3.85%)0000001000
GO:0071365cellular response to auxin stimulus1 (3.85%)0000100000
GO:0070887cellular response to chemical stimulus1 (3.85%)0000100000
GO:0071495cellular response to endogenous stimulus1 (3.85%)0000100000
GO:0032870cellular response to hormone stimulus1 (3.85%)0000100000
GO:0071310cellular response to organic substance1 (3.85%)0000100000
GO:0048878chemical homeostasis1 (3.85%)0000100000
GO:0016568chromatin modification1 (3.85%)0000000001
GO:0006325chromatin organization1 (3.85%)0000000001
GO:0051276chromosome organization1 (3.85%)0000000001
GO:0016569covalent chromatin modification1 (3.85%)0000000001
GO:0048588developmental cell growth1 (3.85%)0000001000
GO:0045229external encapsulating structure organization1 (3.85%)0010000000
GO:0009908flower development1 (3.85%)0100000000
GO:0046486glycerolipid metabolic process1 (3.85%)0010000000
GO:0006650glycerophospholipid metabolic process1 (3.85%)0010000000
GO:0006664glycolipid metabolic process1 (3.85%)0010000000
GO:0016570histone modification1 (3.85%)0000000001
GO:0016572histone phosphorylation1 (3.85%)0000000001
GO:0042592homeostatic process1 (3.85%)0000100000
GO:0009755hormone-mediated signaling pathway1 (3.85%)0000100000
GO:0009700indole phytoalexin biosynthetic process1 (3.85%)0000100000
GO:0046217indole phytoalexin metabolic process1 (3.85%)0000100000
GO:0042435indole-containing compound biosynthetic process1 (3.85%)0000100000
GO:0042430indole-containing compound metabolic process1 (3.85%)0000100000
GO:0048366leaf development1 (3.85%)0000010000
GO:0006629lipid metabolic process1 (3.85%)0010000000
GO:0006643membrane lipid metabolic process1 (3.85%)0010000000
GO:0044706multi-multicellular organism process1 (3.85%)0000001000
GO:0051704multi-organism process1 (3.85%)0000001000
GO:0044703multi-organism reproductive process1 (3.85%)0000001000
GO:0009825multidimensional cell growth1 (3.85%)0010000000
GO:0006996organelle organization1 (3.85%)0000000001
GO:1901566organonitrogen compound biosynthetic process1 (3.85%)0000100000
GO:1901564organonitrogen compound metabolic process1 (3.85%)0000100000
GO:0019637organophosphate metabolic process1 (3.85%)0010000000
GO:0046488phosphatidylinositol metabolic process1 (3.85%)0010000000
GO:0006644phospholipid metabolic process1 (3.85%)0010000000
GO:0048827phyllome development1 (3.85%)0000010000
GO:0052315phytoalexin biosynthetic process1 (3.85%)0000100000
GO:0052314phytoalexin metabolic process1 (3.85%)0000100000
GO:0009827plant-type cell wall modification1 (3.85%)0010000000
GO:0009664plant-type cell wall organization1 (3.85%)0010000000
GO:0071669plant-type cell wall organization or biogenesis1 (3.85%)0010000000
GO:0048868pollen tube development1 (3.85%)0000001000
GO:0009860pollen tube growth1 (3.85%)0000001000
GO:0009856pollination1 (3.85%)0000001000
GO:0048518positive regulation of biological process1 (3.85%)0000100000
GO:0009891positive regulation of biosynthetic process1 (3.85%)0000100000
GO:1901183positive regulation of camalexin biosynthetic process1 (3.85%)0000100000
GO:0031328positive regulation of cellular biosynthetic process1 (3.85%)0000100000
GO:0031325positive regulation of cellular metabolic process1 (3.85%)0000100000
GO:0048522positive regulation of cellular process1 (3.85%)0000100000
GO:0009893positive regulation of metabolic process1 (3.85%)0000100000
GO:0051173positive regulation of nitrogen compound metabolic process1 (3.85%)0000100000
GO:0052322positive regulation of phytoalexin biosynthetic process1 (3.85%)0000100000
GO:0052320positive regulation of phytoalexin metabolic process1 (3.85%)0000100000
GO:1900378positive regulation of secondary metabolite biosynthetic process1 (3.85%)0000100000
GO:0051176positive regulation of sulfur metabolic process1 (3.85%)0000100000
GO:0009791post-embryonic development1 (3.85%)0100000000
GO:0065008regulation of biological quality1 (3.85%)0000100000
GO:1901182regulation of camalexin biosynthetic process1 (3.85%)0000100000
GO:0052319regulation of phytoalexin biosynthetic process1 (3.85%)0000100000
GO:0052318regulation of phytoalexin metabolic process1 (3.85%)0000100000
GO:0043455regulation of secondary metabolic process1 (3.85%)0000100000
GO:1900376regulation of secondary metabolite biosynthetic process1 (3.85%)0000100000
GO:0042762regulation of sulfur metabolic process1 (3.85%)0000100000
GO:0048608reproductive structure development1 (3.85%)0100000000
GO:0061458reproductive system development1 (3.85%)0100000000
GO:0009733response to auxin1 (3.85%)0000100000
GO:0009719response to endogenous stimulus1 (3.85%)0000100000
GO:0009725response to hormone1 (3.85%)0000100000
GO:0009416response to light stimulus1 (3.85%)0000100000
GO:0010033response to organic substance1 (3.85%)0000100000
GO:0009314response to radiation1 (3.85%)0000100000
GO:0019748secondary metabolic process1 (3.85%)0000100000
GO:0044550secondary metabolite biosynthetic process1 (3.85%)0000100000
GO:0044711single-organism biosynthetic process1 (3.85%)0000100000
GO:0044272sulfur compound biosynthetic process1 (3.85%)0000100000
GO:0006790sulfur compound metabolic process1 (3.85%)0000100000
GO:0009404toxin metabolic process1 (3.85%)0000100000

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding14 (53.85%)0210234101
GO:0003824catalytic activity10 (38.46%)0020121211
GO:0043167ion binding7 (26.92%)0000221101
GO:0005515protein binding7 (26.92%)0200023000
GO:1901363heterocyclic compound binding5 (19.23%)0000012101
GO:0016787hydrolase activity5 (19.23%)0020010110
GO:0097159organic cyclic compound binding5 (19.23%)0000012101
GO:0005524ATP binding4 (15.38%)0000011101
GO:0030554adenyl nucleotide binding4 (15.38%)0000011101
GO:0032559adenyl ribonucleotide binding4 (15.38%)0000011101
GO:0043168anion binding4 (15.38%)0000011101
GO:0097367carbohydrate derivative binding4 (15.38%)0000011101
GO:0001882nucleoside binding4 (15.38%)0000011101
GO:1901265nucleoside phosphate binding4 (15.38%)0000011101
GO:0000166nucleotide binding4 (15.38%)0000011101
GO:0001883purine nucleoside binding4 (15.38%)0000011101
GO:0017076purine nucleotide binding4 (15.38%)0000011101
GO:0032550purine ribonucleoside binding4 (15.38%)0000011101
GO:0035639purine ribonucleoside triphosphate binding4 (15.38%)0000011101
GO:0032555purine ribonucleotide binding4 (15.38%)0000011101
GO:0032549ribonucleoside binding4 (15.38%)0000011101
GO:0032553ribonucleotide binding4 (15.38%)0000011101
GO:0036094small molecule binding4 (15.38%)0000011101
GO:0016740transferase activity4 (15.38%)0000011101
GO:0043169cation binding3 (11.54%)0000210000
GO:0016798hydrolase activity, acting on glycosyl bonds3 (11.54%)0010000110
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds3 (11.54%)0010000110
GO:0016301kinase activity3 (11.54%)0000001101
GO:0046872metal ion binding3 (11.54%)0000210000
GO:0016773phosphotransferase activity, alcohol group as acceptor3 (11.54%)0000001101
GO:0004672protein kinase activity3 (11.54%)0000001101
GO:0016772transferase activity, transferring phosphorus-containing groups3 (11.54%)0000001101
GO:0030695GTPase regulator activity2 (7.69%)0000010001
GO:0005516calmodulin binding2 (7.69%)0200000000
GO:0030234enzyme regulator activity2 (7.69%)0000010001
GO:0060589nucleoside-triphosphatase regulator activity2 (7.69%)0000010001
GO:0004674protein serine/threonine kinase activity2 (7.69%)0000000101
GO:0005083small GTPase regulator activity2 (7.69%)0000010001
GO:0003677DNA binding1 (3.85%)0000001000
GO:0003950NAD+ ADP-ribosyltransferase activity1 (3.85%)0000010000
GO:0016881acid-amino acid ligase activity1 (3.85%)0000100000
GO:0035173histone kinase activity1 (3.85%)0000000001
GO:0035175histone kinase activity (H3-S10 specific)1 (3.85%)0000000001
GO:0035174histone serine kinase activity1 (3.85%)0000000001
GO:0016817hydrolase activity, acting on acid anhydrides1 (3.85%)0000010000
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides1 (3.85%)0000010000
GO:0016788hydrolase activity, acting on ester bonds1 (3.85%)0010000000
GO:0010279indole-3-acetic acid amido synthetase activity1 (3.85%)0000100000
GO:0016874ligase activity1 (3.85%)0000100000
GO:0016879ligase activity, forming carbon-nitrogen bonds1 (3.85%)0000100000
GO:0008289lipid binding1 (3.85%)0000001000
GO:0003676nucleic acid binding1 (3.85%)0000001000
GO:0001071nucleic acid binding transcription factor activity1 (3.85%)0000001000
GO:0046983protein dimerization activity1 (3.85%)0000001000
GO:0004712protein serine/threonine/tyrosine kinase activity1 (3.85%)0000000100
GO:0043565sequence-specific DNA binding1 (3.85%)0000001000
GO:0003700sequence-specific DNA binding transcription factor activity1 (3.85%)0000001000
GO:0016757transferase activity, transferring glycosyl groups1 (3.85%)0000010000
GO:0016763transferase activity, transferring pentosyl groups1 (3.85%)0000010000

Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell14 (53.85%)0210233102
GO:0044464cell part14 (53.85%)0210233102
GO:0005622intracellular12 (46.15%)0210231102
GO:0044424intracellular part12 (46.15%)0210231102
GO:0043231intracellular membrane-bounded organelle8 (30.77%)0210121001
GO:0043229intracellular organelle8 (30.77%)0210121001
GO:0043227membrane-bounded organelle8 (30.77%)0210121001
GO:0043226organelle8 (30.77%)0210121001
GO:0005737cytoplasm7 (26.92%)0010220002
GO:0044444cytoplasmic part7 (26.92%)0010220002
GO:0005634nucleus6 (23.08%)0200021001
GO:0032991macromolecular complex5 (19.23%)0000020102
GO:0016020membrane5 (19.23%)0000012101
GO:0043234protein complex5 (19.23%)0000020102
GO:0005829cytosol4 (15.38%)0000120001
GO:0044425membrane part4 (15.38%)0000011101
GO:0034357photosynthetic membrane3 (11.54%)0000010101
GO:0009521photosystem3 (11.54%)0000010101
GO:0009522photosystem I3 (11.54%)0000010101
GO:0009579thylakoid3 (11.54%)0000010101
GO:0044436thylakoid part3 (11.54%)0000010101
GO:0071944cell periphery2 (7.69%)0000002000
GO:0009507chloroplast2 (7.69%)0010100000
GO:0044446intracellular organelle part2 (7.69%)0000010001
GO:0031224intrinsic to membrane2 (7.69%)0000001100
GO:0044428nuclear part2 (7.69%)0000010001
GO:0044422organelle part2 (7.69%)0000010001
GO:0009538photosystem I reaction center2 (7.69%)0000010001
GO:0005886plasma membrane2 (7.69%)0000002000
GO:0009536plastid2 (7.69%)0010100000
GO:0080008Cul4-RING ubiquitin ligase complex1 (3.85%)0000010000
GO:0031225anchored to membrane1 (3.85%)0000001000
GO:0045177apical part of cell1 (3.85%)0000001000
GO:0016324apical plasma membrane1 (3.85%)0000001000
GO:1902494catalytic complex1 (3.85%)0000010000
GO:0009504cell plate1 (3.85%)0000000001
GO:0031461cullin-RING ubiquitin ligase complex1 (3.85%)0000010000
GO:0044430cytoskeletal part1 (3.85%)0000000001
GO:0005856cytoskeleton1 (3.85%)0000000001
GO:0012505endomembrane system1 (3.85%)0000010000
GO:0031975envelope1 (3.85%)0000010000
GO:0016021integral to membrane1 (3.85%)0000000100
GO:0043232intracellular non-membrane-bounded organelle1 (3.85%)0000000001
GO:0070013intracellular organelle lumen1 (3.85%)0000000001
GO:0031974membrane-enclosed lumen1 (3.85%)0000000001
GO:0005874microtubule1 (3.85%)0000000001
GO:0015630microtubule cytoskeleton1 (3.85%)0000000001
GO:0043228non-membrane-bounded organelle1 (3.85%)0000000001
GO:0005635nuclear envelope1 (3.85%)0000010000
GO:0031981nuclear lumen1 (3.85%)0000000001
GO:0005730nucleolus1 (3.85%)0000000001
GO:0031967organelle envelope1 (3.85%)0000010000
GO:0043233organelle lumen1 (3.85%)0000000001
GO:0044459plasma membrane part1 (3.85%)0000001000
GO:0005819spindle1 (3.85%)0000000001
GO:0000151ubiquitin ligase complex1 (3.85%)0000010000