PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_90
Name: BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915
Description: N/A

#Associated genes: 667
#Associated MapMan terms: 206

Show species without binding site experiments

Click table-header(s) to enable sorting

MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	126 (18.89%)	6	11	5	35	33	13	6	17
27.3	RNA.regulation of transcription	111 (16.64%)	6	11	5	32	26	9	6	16
29	protein	57 (8.55%)	1	4	4	22	14	4	2	6
29.4	protein.postranslational modification	35 (5.25%)	1	4	2	14	5	3	1	5
30	signalling	33 (4.95%)	3	6	2	7	4	3	1	7
33	development	29 (4.35%)	3	1	2	7	6	4	2	4
31	cell	25 (3.75%)	0	2	1	15	2	2	0	3
17	hormone metabolism	24 (3.60%)	2	5	3	4	6	2	0	2
33.99	development.unspecified	22 (3.30%)	3	1	2	3	5	3	2	3
26	misc	21 (3.15%)	0	1	1	5	8	2	1	3
34	transport	21 (3.15%)	2	1	1	8	5	1	0	3
10	cell wall	19 (2.85%)	1	3	1	6	4	1	2	1
31.1	cell.organisation	15 (2.25%)	0	0	1	10	0	2	0	2
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	14 (2.10%)	0	0	1	5	3	2	0	3
17.2	hormone metabolism.auxin	13 (1.95%)	1	2	2	2	3	2	0	1
29.5	protein.degradation	13 (1.95%)	0	0	1	3	8	0	0	1
10.5	cell wall.cell wall proteins	12 (1.80%)	0	3	1	3	2	1	1	1
10.5.5	cell wall.cell wall proteins.RGP	12 (1.80%)	0	3	1	3	2	1	1	1
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	12 (1.80%)	1	2	1	2	3	2	0	1
29.4.1	protein.postranslational modification.kinase	12 (1.80%)	0	2	0	4	2	1	1	2
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	12 (1.80%)	0	2	0	4	2	1	1	2
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	11 (1.65%)	1	0	0	3	4	1	1	1
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	11 (1.65%)	1	1	0	3	2	0	2	2
30.2	signalling.receptor kinases	11 (1.65%)	1	2	0	3	0	2	0	3
30.4	signalling.phosphinositides	11 (1.65%)	2	4	0	1	1	1	1	1
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	11 (1.65%)	2	4	0	1	1	1	1	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	10 (1.50%)	1	1	0	4	1	1	0	2
27.4	RNA.RNA binding	9 (1.35%)	0	0	0	3	3	2	0	1
28	DNA	9 (1.35%)	0	0	0	3	3	0	2	1
11	lipid metabolism	8 (1.20%)	1	0	1	1	2	1	1	1
15	metal handling	8 (1.20%)	0	0	0	2	1	0	2	3
15.2	metal handling.binding, chelation and storage	8 (1.20%)	0	0	0	2	1	0	2	3
26.10	misc.cytochrome P450	8 (1.20%)	0	0	1	3	1	1	1	1
27.3.99	RNA.regulation of transcription.unclassified	8 (1.20%)	0	2	0	3	1	1	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	8 (1.20%)	0	0	1	4	2	0	1	0
30.3	signalling.calcium	8 (1.20%)	0	0	2	2	2	0	0	2
2	major CHO metabolism	7 (1.05%)	1	1	1	0	2	1	1	0
10.6	cell wall.degradation	7 (1.05%)	1	0	0	3	2	0	1	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	7 (1.05%)	1	0	0	3	2	0	1	0
2.2	major CHO metabolism.degradation	7 (1.05%)	1	1	1	0	2	1	1	0
21	redox	7 (1.05%)	0	0	0	2	2	0	1	2
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	7 (1.05%)	0	0	1	1	3	1	1	0
33.1	development.storage proteins	7 (1.05%)	0	0	0	4	1	1	0	1
34.16	transport.ABC transporters and multidrug resistance systems	7 (1.05%)	1	1	1	2	1	1	0	0
34.3	transport.amino acids	7 (1.05%)	0	0	0	4	1	0	0	2
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	6 (0.90%)	0	0	0	2	1	1	0	2
27.3.29	RNA.regulation of transcription.TCP transcription factor family	6 (0.90%)	0	1	0	2	3	0	0	0
29.3	protein.targeting	6 (0.90%)	0	0	1	3	1	0	1	0
1	PS	5 (0.75%)	1	0	0	3	1	0	0	0
17.7	hormone metabolism.jasmonate	5 (0.75%)	1	2	1	1	0	0	0	0
17.7.2	hormone metabolism.jasmonate.signal transduction	5 (0.75%)	1	2	1	1	0	0	0	0
2.2.2	major CHO metabolism.degradation.starch	5 (0.75%)	1	1	0	0	1	1	1	0
2.2.2.1	major CHO metabolism.degradation.starch.starch cleavage	5 (0.75%)	1	1	0	0	1	1	1	0
2.2.2.1.2	major CHO metabolism.degradation.starch.starch cleavage.beta amylase	5 (0.75%)	1	1	0	0	1	1	1	0
20	stress	5 (0.75%)	0	0	0	1	1	1	0	2
26.2	misc.UDP glucosyl and glucoronyl transferases	5 (0.75%)	0	0	0	1	3	1	0	0
27.1	RNA.processing	5 (0.75%)	0	0	0	0	3	2	0	0
27.3.42	RNA.regulation of transcription.Bromodomain proteins	5 (0.75%)	1	1	2	0	1	0	0	0
27.3.5	RNA.regulation of transcription.ARR	5 (0.75%)	0	0	0	3	1	1	0	0
28.1	DNA.synthesis/chromatin structure	5 (0.75%)	0	0	0	1	1	0	2	1
29.3.4	protein.targeting.secretory pathway	5 (0.75%)	0	0	1	3	0	0	1	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	5 (0.75%)	0	0	1	3	0	0	1	0
29.5.5	protein.degradation.serine protease	5 (0.75%)	0	0	0	2	2	0	0	1
1.1	PS.lightreaction	4 (0.60%)	1	0	0	3	0	0	0	0
20.2	stress.abiotic	4 (0.60%)	0	0	0	0	1	1	0	2
21.2	redox.ascorbate and glutathione	4 (0.60%)	0	0	0	2	0	0	1	1
21.2.1	redox.ascorbate and glutathione.ascorbate	4 (0.60%)	0	0	0	2	0	0	1	1
23	nucleotide metabolism	4 (0.60%)	0	0	0	1	2	0	1	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	4 (0.60%)	2	2	0	0	0	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	4 (0.60%)	0	1	0	1	1	0	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	4 (0.60%)	0	1	0	2	0	1	0	0
31.2	cell.division	4 (0.60%)	0	1	0	2	0	0	0	1
31.3	cell.cycle	4 (0.60%)	0	1	0	2	1	0	0	0
3	minor CHO metabolism	3 (0.45%)	0	0	0	2	1	0	0	0
11.3	lipid metabolism.Phospholipid synthesis	3 (0.45%)	0	0	1	0	0	0	1	1
16	secondary metabolism	3 (0.45%)	0	0	2	1	0	0	0	0
17.3	hormone metabolism.brassinosteroid	3 (0.45%)	0	1	0	0	2	0	0	0
20.2.1	stress.abiotic.heat	3 (0.45%)	0	0	0	0	1	1	0	1
27.1.1	RNA.processing.splicing	3 (0.45%)	0	0	0	0	2	1	0	0
28.99	DNA.unspecified	3 (0.45%)	0	0	0	1	2	0	0	0
29.5.3	protein.degradation.cysteine protease	3 (0.45%)	0	0	1	1	1	0	0	0
1.1.30	PS.lightreaction.state transition	2 (0.30%)	0	0	0	2	0	0	0	0
4	glycolysis	2 (0.30%)	0	0	0	0	1	0	1	0
8	TCA / org transformation	2 (0.30%)	0	1	0	0	0	0	1	0
9	mitochondrial electron transport / ATP synthesis	2 (0.30%)	0	0	0	1	0	0	1	0
11.1	lipid metabolism.FA synthesis and FA elongation	2 (0.30%)	1	0	0	0	0	1	0	0
11.1.1	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation	2 (0.30%)	1	0	0	0	0	1	0	0
11.1.1.2	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation.heteromeric Complex	2 (0.30%)	1	0	0	0	0	1	0	0
11.1.1.2.1	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation.heteromeric Complex.alpha Carboxyltransferase	2 (0.30%)	1	0	0	0	0	1	0	0
4.1	glycolysis.cytosolic branch	2 (0.30%)	0	0	0	0	1	0	1	0
8.1	TCA / org transformation.TCA	2 (0.30%)	0	1	0	0	0	0	1	0
13	amino acid metabolism	2 (0.30%)	0	0	1	0	0	1	0	0
13.1	amino acid metabolism.synthesis	2 (0.30%)	0	0	1	0	0	1	0	0
16.8	secondary metabolism.flavonoids	2 (0.30%)	0	0	1	1	0	0	0	0
16.8.3	secondary metabolism.flavonoids.dihydroflavonols	2 (0.30%)	0	0	1	1	0	0	0	0
16.8.3.1	secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase	2 (0.30%)	0	0	1	1	0	0	0	0
17.3.1	hormone metabolism.brassinosteroid.synthesis-degradation	2 (0.30%)	0	0	0	0	2	0	0	0
17.3.1.2	hormone metabolism.brassinosteroid.synthesis-degradation.sterols	2 (0.30%)	0	0	0	0	2	0	0	0
17.3.1.2.2	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.SMT2	2 (0.30%)	0	0	0	0	2	0	0	0
17.5	hormone metabolism.ethylene	2 (0.30%)	0	0	0	1	1	0	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	2 (0.30%)	0	0	0	1	1	0	0	0
2.2.1	major CHO metabolism.degradation.sucrose	2 (0.30%)	0	0	1	0	1	0	0	0
21.4	redox.glutaredoxins	2 (0.30%)	0	0	0	0	1	0	0	1
23.3	nucleotide metabolism.salvage	2 (0.30%)	0	0	0	0	2	0	0	0
23.3.1	nucleotide metabolism.salvage.phosphoribosyltransferases	2 (0.30%)	0	0	0	0	2	0	0	0
23.3.1.1	nucleotide metabolism.salvage.phosphoribosyltransferases.aprt	2 (0.30%)	0	0	0	0	2	0	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	2 (0.30%)	0	0	0	1	0	0	1	0
26.16	misc.myrosinases-lectin-jacalin	2 (0.30%)	0	1	0	0	0	0	0	1
26.3	misc.gluco-, galacto- and mannosidases	2 (0.30%)	0	0	0	1	1	0	0	0
27.3.15	RNA.regulation of transcription.CCAAT box binding factor family, HAP3	2 (0.30%)	0	0	0	2	0	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	2 (0.30%)	0	0	0	0	0	1	0	1
27.3.52	RNA.regulation of transcription.Global transcription factor group	2 (0.30%)	0	0	0	1	0	0	1	0
27.3.54	RNA.regulation of transcription.Histone acetyltransferases	2 (0.30%)	0	1	0	1	0	0	0	0
27.3.64	RNA.regulation of transcription.PHOR1	2 (0.30%)	0	0	0	0	0	0	0	2
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	2 (0.30%)	0	0	0	1	1	0	0	0
29.2	protein.synthesis	2 (0.30%)	0	0	0	2	0	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	2 (0.30%)	0	0	0	1	0	1	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	2 (0.30%)	0	1	0	0	0	0	0	1
30.2.99	signalling.receptor kinases.misc	2 (0.30%)	0	0	0	0	0	0	0	2
30.5	signalling.G-proteins	2 (0.30%)	0	0	0	1	1	0	0	0
31.4	cell.vesicle transport	2 (0.30%)	0	0	0	1	1	0	0	0
34.13	transport.peptides and oligopeptides	2 (0.30%)	1	0	0	1	0	0	0	0
34.6	transport.sulphate	2 (0.30%)	0	0	0	1	1	0	0	0
34.99	transport.misc	2 (0.30%)	0	0	0	0	1	0	0	1
8.1.4	TCA / org transformation.TCA.IDH	2 (0.30%)	0	1	0	0	0	0	1	0
1.1.1	PS.lightreaction.photosystem II	1 (0.15%)	0	0	0	1	0	0	0	0
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	1 (0.15%)	0	0	0	1	0	0	0	0
1.1.3	PS.lightreaction.cytochrome b6/f	1 (0.15%)	1	0	0	0	0	0	0	0
1.2	PS.photorespiration	1 (0.15%)	0	0	0	0	1	0	0	0
1.2.4	PS.photorespiration.glycine cleavage	1 (0.15%)	0	0	0	0	1	0	0	0
1.2.4.4	PS.photorespiration.glycine cleavage.H protein	1 (0.15%)	0	0	0	0	1	0	0	0
11.10.2	lipid metabolism.glycolipid synthesis.DGDG synthase	1 (0.15%)	0	0	0	1	0	0	0	0
3.1	minor CHO metabolism.raffinose family	1 (0.15%)	0	0	0	0	1	0	0	0
3.2	minor CHO metabolism.trehalose	1 (0.15%)	0	0	0	1	0	0	0	0
3.6	minor CHO metabolism.callose	1 (0.15%)	0	0	0	1	0	0	0	0
7	OPP	1 (0.15%)	0	0	0	0	0	0	0	1
7.2	OPP.non-reductive PP	1 (0.15%)	0	0	0	0	0	0	0	1
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	1 (0.15%)	0	0	0	1	0	0	0	0
9.6	mitochondrial electron transport / ATP synthesis.cytochrome c	1 (0.15%)	0	0	0	0	0	0	1	0
11.10	lipid metabolism.glycolipid synthesis	1 (0.15%)	0	0	0	1	0	0	0	0
11.4	lipid metabolism.TAG synthesis	1 (0.15%)	0	0	0	0	1	0	0	0
11.9	lipid metabolism.lipid degradation	1 (0.15%)	0	0	0	0	1	0	0	0
11.9.2	lipid metabolism.lipid degradation.lipases	1 (0.15%)	0	0	0	0	1	0	0	0
11.9.2.1	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	1 (0.15%)	0	0	0	0	1	0	0	0
13.1.1	amino acid metabolism.synthesis.central amino acid metabolism	1 (0.15%)	0	0	0	0	0	1	0	0
13.1.1.2	amino acid metabolism.synthesis.central amino acid metabolism.aspartate	1 (0.15%)	0	0	0	0	0	1	0	0
13.1.1.2.1	amino acid metabolism.synthesis.central amino acid metabolism.aspartate.aspartate aminotransferase	1 (0.15%)	0	0	0	0	0	1	0	0
13.1.3.6.1.1	amino acid metabolism.synthesis.aspartate family.misc.homoserine.aspartate kinase	1 (0.15%)	1	0	0	0	0	0	0	0
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	1 (0.15%)	0	0	1	0	0	0	0	0
13.1.5.1	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine	1 (0.15%)	0	0	1	0	0	0	0	0
13.1.5.1.1	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase	1 (0.15%)	0	0	1	0	0	0	0	0
16.1	secondary metabolism.isoprenoids	1 (0.15%)	0	0	1	0	0	0	0	0
16.1.2	secondary metabolism.isoprenoids.mevalonate pathway	1 (0.15%)	0	0	1	0	0	0	0	0
16.1.2.3	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	1 (0.15%)	0	0	1	0	0	0	0	0
17.1	hormone metabolism.abscisic acid	1 (0.15%)	0	0	0	0	0	0	0	1
17.1.2	hormone metabolism.abscisic acid.signal transduction	1 (0.15%)	0	0	0	0	0	0	0	1
17.2.1	hormone metabolism.auxin.synthesis-degradation	1 (0.15%)	0	0	1	0	0	0	0	0
17.3.2	hormone metabolism.brassinosteroid.signal transduction	1 (0.15%)	0	1	0	0	0	0	0	0
17.3.2.2	hormone metabolism.brassinosteroid.signal transduction.BZR	1 (0.15%)	0	1	0	0	0	0	0	0
18.2	Co-factor and vitamine metabolism.thiamine	1 (0.15%)	0	0	0	1	0	0	0	0
2.2.1.3	major CHO metabolism.degradation.sucrose.invertases	1 (0.15%)	0	0	0	0	1	0	0	0
2.2.1.3.1	major CHO metabolism.degradation.sucrose.invertases.neutral	1 (0.15%)	0	0	0	0	1	0	0	0
2.2.1.99	major CHO metabolism.degradation.sucrose.misc	1 (0.15%)	0	0	1	0	0	0	0	0
18	Co-factor and vitamine metabolism	1 (0.15%)	0	0	0	1	0	0	0	0
20.1	stress.biotic	1 (0.15%)	0	0	0	1	0	0	0	0
20.2.3	stress.abiotic.drought/salt	1 (0.15%)	0	0	0	0	0	0	0	1
21.1	redox.thioredoxin	1 (0.15%)	0	0	0	0	1	0	0	0
23.4.1	nucleotide metabolism.phosphotransfer and pyrophosphatases.adenylate kinase	1 (0.15%)	0	0	0	0	0	0	1	0
23.4.10	nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	1 (0.15%)	0	0	0	1	0	0	0	0
25	C1-metabolism	1 (0.15%)	0	1	0	0	0	0	0	0
25.8	C1-metabolism.tetrahydrofolate synthase	1 (0.15%)	0	1	0	0	0	0	0	0
26.12	misc.peroxidases	1 (0.15%)	0	0	0	0	1	0	0	0
26.18	misc.invertase/pectin methylesterase inhibitor family protein	1 (0.15%)	0	0	0	0	1	0	0	0
26.19	misc.plastocyanin-like	1 (0.15%)	0	0	0	0	1	0	0	0
26.28	misc.GDSL-motif lipase	1 (0.15%)	0	0	0	0	0	0	0	1
27.1.2	RNA.processing.RNA helicase	1 (0.15%)	0	0	0	0	0	1	0	0
27.2	RNA.transcription	1 (0.15%)	0	0	0	0	1	0	0	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	1 (0.15%)	0	0	0	0	1	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.15%)	0	0	1	0	0	0	0	0
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	1 (0.15%)	0	0	0	0	1	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	1 (0.15%)	0	0	0	0	0	0	0	1
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.15%)	0	0	0	0	0	0	1	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.15%)	0	0	0	0	1	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.15%)	0	1	0	0	0	0	0	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	1 (0.15%)	0	0	0	0	1	0	0	0
28.2	DNA.repair	1 (0.15%)	0	0	0	1	0	0	0	0
29.2.1.2.2.11	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L11	1 (0.15%)	0	0	0	0	0	0	0	1
29.2.1.2.2.30	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L30	1 (0.15%)	0	0	0	0	0	0	0	1
29.2.1.2.2.518	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18A	1 (0.15%)	0	0	0	0	1	0	0	0
29.2.3	protein.synthesis.initiation	1 (0.15%)	0	0	0	1	0	0	0	0
29.2.5	protein.synthesis.release	1 (0.15%)	0	0	0	1	0	0	0	0
29.3.1	protein.targeting.nucleus	1 (0.15%)	0	0	0	0	1	0	0	0
29.5.11	protein.degradation.ubiquitin	1 (0.15%)	0	0	0	0	1	0	0	0
29.5.11.1	protein.degradation.ubiquitin.ubiquitin	1 (0.15%)	0	0	0	0	1	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.15%)	0	0	0	0	1	0	0	0
29.7	protein.glycosylation	1 (0.15%)	0	0	0	0	0	1	0	0
3.1.1	minor CHO metabolism.raffinose family.galactinol synthases	1 (0.15%)	0	0	0	0	1	0	0	0
3.1.1.2	minor CHO metabolism.raffinose family.galactinol synthases.putative	1 (0.15%)	0	0	0	0	1	0	0	0
3.2.3	minor CHO metabolism.trehalose.potential TPS/TPP	1 (0.15%)	0	0	0	1	0	0	0	0
30.2.7	signalling.receptor kinases.leucine rich repeat VII	1 (0.15%)	1	0	0	0	0	0	0	0
30.6	signalling.MAP kinases	1 (0.15%)	0	0	0	0	0	0	0	1
34.8	transport.metabolite transporters at the envelope membrane	1 (0.15%)	0	0	0	0	1	0	0	0
4.1.12	glycolysis.cytosolic branch.phosphoglycerate mutase	1 (0.15%)	0	0	0	0	1	0	0	0
4.1.14	glycolysis.cytosolic branch.pyruvate kinase (PK)	1 (0.15%)	0	0	0	0	0	0	1	0
7.2.3	OPP.non-reductive PP.ribulose-phosphate 3-epimerase	1 (0.15%)	0	0	0	0	0	0	0	1
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	1 (0.15%)	0	0	0	1	0	0	0	0