PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_393
Name: REM1
Description: N/A

#Associated genes: 304
#Associated MapMan terms: 163

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	45 (14.80%)	3	1	4	11	14	6	3	3
27.3	RNA.regulation of transcription	38 (12.50%)	3	1	3	10	12	5	2	2
29	protein	34 (11.18%)	1	3	3	8	6	4	2	7
30	signalling	23 (7.57%)	0	3	2	4	5	5	2	2
29.4	protein.postranslational modification	22 (7.24%)	1	3	1	6	3	2	1	5
31	cell	19 (6.25%)	2	0	0	4	3	2	1	7
34	transport	18 (5.92%)	1	0	0	4	4	2	3	4
17	hormone metabolism	13 (4.28%)	0	0	0	1	8	2	2	0
31.1	cell.organisation	12 (3.95%)	2	0	0	4	1	1	1	3
30.5	signalling.G-proteins	9 (2.96%)	0	1	0	2	4	1	0	1
26	misc	8 (2.63%)	1	2	1	1	0	1	1	1
30.2	signalling.receptor kinases	8 (2.63%)	0	1	1	2	0	2	1	1
29.4.1	protein.postranslational modification.kinase	7 (2.30%)	0	1	0	2	2	0	0	2
29.5	protein.degradation	7 (2.30%)	0	0	1	0	2	1	1	2
30.2.11	signalling.receptor kinases.leucine rich repeat XI	7 (2.30%)	0	1	1	2	0	2	1	0
11	lipid metabolism	6 (1.97%)	0	3	1	1	1	0	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	6 (1.97%)	0	0	1	2	1	1	0	1
17.2	hormone metabolism.auxin	5 (1.64%)	0	0	0	1	4	0	0	0
27.3.99	RNA.regulation of transcription.unclassified	5 (1.64%)	0	0	1	1	2	1	0	0
28	DNA	5 (1.64%)	0	0	0	2	2	0	1	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	5 (1.64%)	0	0	0	2	1	0	0	2
10	cell wall	4 (1.32%)	2	0	1	0	1	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	4 (1.32%)	0	2	1	0	1	0	0	0
12	N-metabolism	4 (1.32%)	0	1	0	1	1	1	0	0
12.2	N-metabolism.ammonia metabolism	4 (1.32%)	0	1	0	1	1	1	0	0
12.2.1	N-metabolism.ammonia metabolism.glutamate synthase	4 (1.32%)	0	1	0	1	1	1	0	0
13	amino acid metabolism	4 (1.32%)	0	1	0	0	3	0	0	0
13.1	amino acid metabolism.synthesis	4 (1.32%)	0	1	0	0	3	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	4 (1.32%)	0	0	1	0	3	0	0	0
28.1	DNA.synthesis/chromatin structure	4 (1.32%)	0	0	0	1	2	0	1	0
29.5.4	protein.degradation.aspartate protease	4 (1.32%)	0	0	1	0	0	1	1	1
33	development	4 (1.32%)	1	0	0	1	1	0	0	1
34.11	transport.NDP-sugars at the ER	4 (1.32%)	0	0	0	0	2	1	1	0
1	PS	3 (0.99%)	0	0	0	0	2	0	1	0
1.1	PS.lightreaction	3 (0.99%)	0	0	0	0	2	0	1	0
1.1.1	PS.lightreaction.photosystem II	3 (0.99%)	0	0	0	0	2	0	1	0
17.1	hormone metabolism.abscisic acid	3 (0.99%)	0	0	0	0	1	1	1	0
17.2.2	hormone metabolism.auxin.signal transduction	3 (0.99%)	0	0	0	1	2	0	0	0
17.3	hormone metabolism.brassinosteroid	3 (0.99%)	0	0	0	0	1	1	1	0
27.2	RNA.transcription	3 (0.99%)	0	0	0	0	2	0	1	0
31.2	cell.division	3 (0.99%)	0	0	0	0	0	1	0	2
31.4	cell.vesicle transport	3 (0.99%)	0	0	0	0	2	0	0	1
33.99	development.unspecified	3 (0.99%)	1	0	0	0	1	0	0	1
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	2 (0.66%)	0	0	0	0	2	0	0	0
7	OPP	2 (0.66%)	0	0	0	1	1	0	0	0
10.8	cell wall.pectin*esterases	2 (0.66%)	2	0	0	0	0	0	0	0
10.8.1	cell wall.pectin*esterases.PME	2 (0.66%)	2	0	0	0	0	0	0	0
11.1.10	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	2 (0.66%)	0	2	0	0	0	0	0	0
11.2	lipid metabolism.FA desaturation	2 (0.66%)	0	1	0	1	0	0	0	0
11.2.1	lipid metabolism.FA desaturation.desaturase	2 (0.66%)	0	1	0	1	0	0	0	0
13.1.1	amino acid metabolism.synthesis.central amino acid metabolism	2 (0.66%)	0	0	0	0	2	0	0	0
13.1.1.3	amino acid metabolism.synthesis.central amino acid metabolism.alanine	2 (0.66%)	0	0	0	0	2	0	0	0
13.1.1.3.1	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine aminotransferase	2 (0.66%)	0	0	0	0	2	0	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	2 (0.66%)	0	0	0	0	0	1	1	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	2 (0.66%)	0	0	0	0	2	0	0	0
17.3.2	hormone metabolism.brassinosteroid.signal transduction	2 (0.66%)	0	0	0	0	1	1	0	0
17.3.2.99	hormone metabolism.brassinosteroid.signal transduction.other	2 (0.66%)	0	0	0	0	1	1	0	0
7.1	OPP.oxidative PP	2 (0.66%)	0	0	0	1	1	0	0	0
20	stress	2 (0.66%)	0	0	0	0	2	0	0	0
26.10	misc.cytochrome P450	2 (0.66%)	0	0	0	1	0	0	1	0
27.1	RNA.processing	2 (0.66%)	0	0	0	1	0	0	0	1
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	2 (0.66%)	0	0	0	0	2	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	2 (0.66%)	0	0	0	2	0	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	2 (0.66%)	0	0	0	1	1	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	2 (0.66%)	0	0	0	1	0	0	1	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	2 (0.66%)	0	0	0	2	0	0	0	0
27.4	RNA.RNA binding	2 (0.66%)	0	0	1	0	0	1	0	0
29.2	protein.synthesis	2 (0.66%)	0	0	0	0	1	1	0	0
29.2.3	protein.synthesis.initiation	2 (0.66%)	0	0	0	0	1	1	0	0
29.5.11	protein.degradation.ubiquitin	2 (0.66%)	0	0	0	0	1	0	0	1
29.6	protein.folding	2 (0.66%)	0	0	0	2	0	0	0	0
30.11	signalling.light	2 (0.66%)	0	0	0	0	1	1	0	0
30.3	signalling.calcium	2 (0.66%)	0	1	1	0	0	0	0	0
30.99	signalling.unspecified	2 (0.66%)	0	0	0	0	0	1	1	0
31.2.5	cell.division.plastid	2 (0.66%)	0	0	0	0	0	0	0	2
34.1	transport.p- and v-ATPases	2 (0.66%)	0	0	0	2	0	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	2 (0.66%)	0	0	0	1	0	0	0	1
34.99	transport.misc	2 (0.66%)	0	0	0	0	0	0	2	0
7.1.3	OPP.oxidative PP.6-phosphogluconate dehydrogenase	2 (0.66%)	0	0	0	1	1	0	0	0
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	1 (0.33%)	0	0	0	0	0	0	1	0
2	major CHO metabolism	1 (0.33%)	0	0	0	0	1	0	0	0
3	minor CHO metabolism	1 (0.33%)	0	1	0	0	0	0	0	0
8	TCA / org transformation	1 (0.33%)	0	0	1	0	0	0	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.33%)	0	0	0	0	0	0	1	0
10.5	cell wall.cell wall proteins	1 (0.33%)	0	0	0	0	1	0	0	0
10.5.3	cell wall.cell wall proteins.LRR	1 (0.33%)	0	0	0	0	1	0	0	0
10.7	cell wall.modification	1 (0.33%)	0	0	1	0	0	0	0	0
11.1.31	lipid metabolism.FA synthesis and FA elongation.pyruvate DH	1 (0.33%)	0	0	0	0	1	0	0	0
11.1.9	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	1 (0.33%)	0	0	1	0	0	0	0	0
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (0.33%)	0	0	0	0	1	0	0	0
13.1.6.5	amino acid metabolism.synthesis.aromatic aa.tryptophan	1 (0.33%)	0	0	0	0	1	0	0	0
13.1.7	amino acid metabolism.synthesis.histidine	1 (0.33%)	0	1	0	0	0	0	0	0
13.1.7.2	amino acid metabolism.synthesis.histidine.bifunctional phosphoribosyl-ATP diphosphatase and phosphoribosyl-AMP cyclohydrolase	1 (0.33%)	0	1	0	0	0	0	0	0
16	secondary metabolism	1 (0.33%)	0	0	0	0	0	0	0	1
16.8	secondary metabolism.flavonoids	1 (0.33%)	0	0	0	0	0	0	0	1
16.8.2	secondary metabolism.flavonoids.chalcones	1 (0.33%)	0	0	0	0	0	0	0	1
17.1.1	hormone metabolism.abscisic acid.synthesis-degradation	1 (0.33%)	0	0	0	0	1	0	0	0
17.1.1.1.10	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	1 (0.33%)	0	0	0	0	0	0	0	1
17.3.1	hormone metabolism.brassinosteroid.synthesis-degradation	1 (0.33%)	0	0	0	0	0	0	1	0
17.3.1.2	hormone metabolism.brassinosteroid.synthesis-degradation.sterols	1 (0.33%)	0	0	0	0	0	0	1	0
17.3.1.2.5	hormone metabolism.brassinosteroid.synthesis-degradation.sterols.HYD1	1 (0.33%)	0	0	0	0	0	0	1	0
17.4.2	hormone metabolism.cytokinin.signal transduction	1 (0.33%)	0	0	0	0	1	0	0	0
2.2	major CHO metabolism.degradation	1 (0.33%)	0	0	0	0	1	0	0	0
3.5	minor CHO metabolism.others	1 (0.33%)	0	1	0	0	0	0	0	0
8.1	TCA / org transformation.TCA	1 (0.33%)	0	0	1	0	0	0	0	0
17.4	hormone metabolism.cytokinin	1 (0.33%)	0	0	0	0	1	0	0	0
17.7	hormone metabolism.jasmonate	1 (0.33%)	0	0	0	0	1	0	0	0
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	1 (0.33%)	0	0	0	0	1	0	0	0
17.7.1.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	1 (0.33%)	0	0	0	0	1	0	0	0
2.2.2	major CHO metabolism.degradation.starch	1 (0.33%)	0	0	0	0	1	0	0	0
2.2.2.1	major CHO metabolism.degradation.starch.starch cleavage	1 (0.33%)	0	0	0	0	1	0	0	0
2.2.2.1.2	major CHO metabolism.degradation.starch.starch cleavage.beta amylase	1 (0.33%)	0	0	0	0	1	0	0	0
20.1	stress.biotic	1 (0.33%)	0	0	0	0	1	0	0	0
20.2	stress.abiotic	1 (0.33%)	0	0	0	0	1	0	0	0
20.2.99	stress.abiotic.unspecified	1 (0.33%)	0	0	0	0	1	0	0	0
23.3	nucleotide metabolism.salvage	1 (0.33%)	0	0	0	0	1	0	0	0
23.3.3	nucleotide metabolism.salvage.NUDIX hydrolases	1 (0.33%)	0	0	0	0	1	0	0	0
26.1	misc.misc2	1 (0.33%)	0	0	0	0	0	0	0	1
26.11	misc.alcohol dehydrogenases	1 (0.33%)	0	0	0	0	0	1	0	0
26.12	misc.peroxidases	1 (0.33%)	0	1	0	0	0	0	0	0
26.21	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	1 (0.33%)	0	0	1	0	0	0	0	0
26.3	misc.gluco-, galacto- and mannosidases	1 (0.33%)	0	1	0	0	0	0	0	0
26.3.5	misc.gluco-, galacto- and mannosidases.glycosyl hydrolase family 5	1 (0.33%)	0	1	0	0	0	0	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	1 (0.33%)	1	0	0	0	0	0	0	0
27.1.1	RNA.processing.splicing	1 (0.33%)	0	0	0	1	0	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.33%)	0	0	0	0	0	1	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.33%)	1	0	0	0	0	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.33%)	0	0	0	0	1	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.33%)	0	0	0	0	0	1	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.33%)	1	0	0	0	0	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (0.33%)	0	0	0	0	0	1	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.33%)	0	1	0	0	0	0	0	0
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	1 (0.33%)	0	0	0	0	0	0	0	1
27.3.63	RNA.regulation of transcription.PHD finger transcription factor	1 (0.33%)	0	0	0	0	1	0	0	0
27.3.64	RNA.regulation of transcription.PHOR1	1 (0.33%)	1	0	0	0	0	0	0	0
27.3.65	RNA.regulation of transcription.Polycomb Group (PcG)	1 (0.33%)	0	0	0	0	1	0	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.33%)	0	0	0	0	0	0	1	0
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	1 (0.33%)	0	0	0	1	0	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.33%)	0	0	0	0	1	0	0	0
28.99	DNA.unspecified	1 (0.33%)	0	0	0	1	0	0	0	0
29.1	protein.aa activation	1 (0.33%)	0	0	1	0	0	0	0	0
29.1.30	protein.aa activation.pseudouridylate synthase	1 (0.33%)	0	0	1	0	0	0	0	0
29.2.1.2.2.3	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L3	1 (0.33%)	0	1	0	0	0	0	0	0
29.5.11.1	protein.degradation.ubiquitin.ubiquitin	1 (0.33%)	0	0	0	0	0	0	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	1 (0.33%)	0	0	0	0	0	1	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.33%)	0	1	0	0	0	0	0	0
29.5.3	protein.degradation.cysteine protease	1 (0.33%)	0	0	0	0	1	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.33%)	0	0	0	0	0	0	0	1
31.3	cell.cycle	1 (0.33%)	0	0	0	0	0	0	0	1
33.1	development.storage proteins	1 (0.33%)	0	0	0	1	0	0	0	0
34.12	transport.metal	1 (0.33%)	0	0	0	1	0	0	0	0
34.13	transport.peptides and oligopeptides	1 (0.33%)	0	0	0	0	0	0	0	1
34.19	transport.Major Intrinsic Proteins	1 (0.33%)	0	0	0	0	1	0	0	0
34.19.2	transport.Major Intrinsic Proteins.TIP	1 (0.33%)	0	0	0	0	1	0	0	0
34.20	transport.porins	1 (0.33%)	0	0	0	0	0	0	0	1
34.2	transport.sugars	1 (0.33%)	0	0	0	0	0	0	0	1
34.3	transport.amino acids	1 (0.33%)	0	0	0	0	0	1	0	0
34.7	transport.phosphate	1 (0.33%)	1	0	0	0	0	0	0	0
34.8	transport.metabolite transporters at the envelope membrane	1 (0.33%)	0	0	0	0	1	0	0	0
8.1.1	TCA / org transformation.TCA.pyruvate DH	1 (0.33%)	0	0	1	0	0	0	0	0
8.1.1.2	TCA / org transformation.TCA.pyruvate DH.E2	1 (0.33%)	0	0	1	0	0	0	0	0
9.9	mitochondrial electron transport / ATP synthesis.F1-ATPase	1 (0.33%)	0	0	0	0	0	0	1	0
23	nucleotide metabolism	1 (0.33%)	0	0	0	0	1	0	0	0