PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_367
Name: REM1
Description: N/A

#Associated genes: 327
#Associated MapMan terms: 154

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	54 (16.51%)	2	5	3	21	10	4	3	6
27.3	RNA.regulation of transcription	50 (15.29%)	2	5	3	21	8	4	2	5
29	protein	33 (10.09%)	3	4	0	11	10	0	1	4
30	signalling	22 (6.73%)	2	4	1	2	5	3	1	4
29.4	protein.postranslational modification	18 (5.50%)	1	1	0	7	6	0	0	3
34	transport	18 (5.50%)	2	1	1	5	5	3	1	0
26	misc	16 (4.89%)	1	3	2	3	4	0	0	3
31	cell	13 (3.98%)	0	0	0	6	4	2	0	1
30.2	signalling.receptor kinases	11 (3.36%)	1	3	1	0	3	1	0	2
20	stress	9 (2.75%)	3	1	1	2	1	0	0	1
27.3.99	RNA.regulation of transcription.unclassified	9 (2.75%)	1	0	0	5	1	1	1	0
10	cell wall	8 (2.45%)	2	2	0	1	1	2	0	0
29.5	protein.degradation	8 (2.45%)	2	2	0	1	2	0	1	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	7 (2.14%)	0	1	1	4	0	1	0	0
28	DNA	7 (2.14%)	0	2	0	2	0	1	2	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	7 (2.14%)	1	2	0	0	2	1	0	1
34.3	transport.amino acids	7 (2.14%)	0	0	0	0	4	2	1	0
20.2	stress.abiotic	6 (1.83%)	1	1	0	2	1	0	0	1
28.1	DNA.synthesis/chromatin structure	6 (1.83%)	0	2	0	2	0	1	1	0
33	development	6 (1.83%)	1	2	0	1	2	0	0	0
17.1.1.1.10	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	5 (1.53%)	1	0	0	2	2	0	0	0
29.4.1	protein.postranslational modification.kinase	5 (1.53%)	0	0	0	2	1	0	0	2
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	5 (1.53%)	0	0	0	2	1	0	0	2
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	5 (1.53%)	0	1	0	1	3	0	0	0
30.5	signalling.G-proteins	5 (1.53%)	1	0	0	2	2	0	0	0
10.6	cell wall.degradation	4 (1.22%)	0	1	0	1	1	1	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	4 (1.22%)	0	1	0	1	1	1	0	0
17	hormone metabolism	4 (1.22%)	0	1	1	1	0	0	0	1
26.2	misc.UDP glucosyl and glucoronyl transferases	4 (1.22%)	0	0	0	1	3	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	4 (1.22%)	0	0	0	1	1	0	1	1
27.3.29	RNA.regulation of transcription.TCP transcription factor family	4 (1.22%)	0	0	0	3	1	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	4 (1.22%)	0	0	0	3	1	0	0	0
29.3	protein.targeting	4 (1.22%)	0	1	0	0	2	0	0	1
29.3.1	protein.targeting.nucleus	4 (1.22%)	0	1	0	0	2	0	0	1
29.5.11	protein.degradation.ubiquitin	4 (1.22%)	0	1	0	1	1	0	1	0
30.2.17	signalling.receptor kinases.DUF 26	4 (1.22%)	0	1	1	0	1	0	0	1
31.2	cell.division	4 (1.22%)	0	0	0	2	1	1	0	0
31.3	cell.cycle	4 (1.22%)	0	0	0	3	0	0	0	1
33.99	development.unspecified	4 (1.22%)	1	1	0	0	2	0	0	0
9	mitochondrial electron transport / ATP synthesis	3 (0.92%)	1	0	0	0	0	0	1	1
15	metal handling	3 (0.92%)	0	0	0	0	0	0	0	3
15.2	metal handling.binding, chelation and storage	3 (0.92%)	0	0	0	0	0	0	0	3
20.1	stress.biotic	3 (0.92%)	2	0	1	0	0	0	0	0
20.2.1	stress.abiotic.heat	3 (0.92%)	0	1	0	2	0	0	0	0
26.10	misc.cytochrome P450	3 (0.92%)	0	1	1	1	0	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	3 (0.92%)	0	0	0	1	0	1	0	1
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	3 (0.92%)	0	0	0	0	3	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	3 (0.92%)	0	0	0	1	0	1	1	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	3 (0.92%)	1	0	0	0	0	0	1	1
30.11	signalling.light	3 (0.92%)	0	1	0	0	0	1	0	1
30.3	signalling.calcium	3 (0.92%)	0	0	0	0	0	1	1	1
31.1	cell.organisation	3 (0.92%)	0	0	0	1	1	1	0	0
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	3 (0.92%)	1	0	0	0	0	0	1	1
1	PS	2 (0.61%)	0	0	0	0	2	0	0	0
1.1	PS.lightreaction	2 (0.61%)	0	0	0	0	2	0	0	0
1.1.1	PS.lightreaction.photosystem II	2 (0.61%)	0	0	0	0	2	0	0	0
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	2 (0.61%)	0	0	0	0	2	0	0	0
3	minor CHO metabolism	2 (0.61%)	0	0	0	1	0	0	1	0
10.5	cell wall.cell wall proteins	2 (0.61%)	1	1	0	0	0	0	0	0
17.5	hormone metabolism.ethylene	2 (0.61%)	0	0	0	1	0	0	0	1
20.2.99	stress.abiotic.unspecified	2 (0.61%)	0	0	0	0	1	0	0	1
23	nucleotide metabolism	2 (0.61%)	0	1	0	0	1	0	0	0
26.13	misc.acid and other phosphatases	2 (0.61%)	1	0	1	0	0	0	0	0
26.24	misc.GCN5-related N-acetyltransferase	2 (0.61%)	0	1	0	1	0	0	0	0
26.3	misc.gluco-, galacto- and mannosidases	2 (0.61%)	0	0	0	0	0	0	0	2
26.3.5	misc.gluco-, galacto- and mannosidases.glycosyl hydrolase family 5	2 (0.61%)	0	0	0	0	0	0	0	2
27.1	RNA.processing	2 (0.61%)	0	0	0	0	1	0	0	1
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	2 (0.61%)	0	2	0	0	0	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	2 (0.61%)	0	0	1	1	0	0	0	0
27.3.64	RNA.regulation of transcription.PHOR1	2 (0.61%)	0	1	0	1	0	0	0	0
3.6	minor CHO metabolism.callose	2 (0.61%)	0	0	0	1	0	0	1	0
29.1	protein.aa activation	2 (0.61%)	0	0	0	2	0	0	0	0
29.5.3	protein.degradation.cysteine protease	2 (0.61%)	1	1	0	0	0	0	0	0
31.2.5	cell.division.plastid	2 (0.61%)	0	0	0	1	0	1	0	0
31.4	cell.vesicle transport	2 (0.61%)	0	0	0	0	2	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	2 (0.61%)	0	0	0	2	0	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	2 (0.61%)	0	1	1	0	0	0	0	0
2	major CHO metabolism	1 (0.31%)	0	0	0	0	1	0	0	0
4	glycolysis	1 (0.31%)	0	0	0	1	0	0	0	0
10.1	cell wall.precursor synthesis	1 (0.31%)	1	0	0	0	0	0	0	0
10.1.30	cell wall.precursor synthesis.sugar kinases	1 (0.31%)	1	0	0	0	0	0	0	0
10.1.30.3	cell wall.precursor synthesis.sugar kinases.glucuronic acid kinase	1 (0.31%)	1	0	0	0	0	0	0	0
10.5.1	cell wall.cell wall proteins.AGPs	1 (0.31%)	1	0	0	0	0	0	0	0
10.5.1.1	cell wall.cell wall proteins.AGPs.AGP	1 (0.31%)	1	0	0	0	0	0	0	0
10.5.3	cell wall.cell wall proteins.LRR	1 (0.31%)	0	1	0	0	0	0	0	0
10.8	cell wall.pectin*esterases	1 (0.31%)	0	0	0	0	0	1	0	0
10.8.1	cell wall.pectin*esterases.PME	1 (0.31%)	0	0	0	0	0	1	0	0
12	N-metabolism	1 (0.31%)	0	0	0	1	0	0	0	0
12.4	N-metabolism.misc	1 (0.31%)	0	0	0	1	0	0	0	0
13	amino acid metabolism	1 (0.31%)	0	0	0	0	1	0	0	0
13.1	amino acid metabolism.synthesis	1 (0.31%)	0	0	0	0	1	0	0	0
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (0.31%)	0	0	0	0	1	0	0	0
13.1.6.3	amino acid metabolism.synthesis.aromatic aa.phenylalanine	1 (0.31%)	0	0	0	0	1	0	0	0
13.1.6.3.1	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	1 (0.31%)	0	0	0	0	1	0	0	0
16	secondary metabolism	1 (0.31%)	0	0	1	0	0	0	0	0
16.2	secondary metabolism.phenylpropanoids	1 (0.31%)	0	0	1	0	0	0	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	1 (0.31%)	0	0	1	0	0	0	0	0
16.2.1.10	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	1 (0.31%)	0	0	1	0	0	0	0	0
2.2	major CHO metabolism.degradation	1 (0.31%)	0	0	0	0	1	0	0	0
17.1	hormone metabolism.abscisic acid	1 (0.31%)	0	1	0	0	0	0	0	0
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	1 (0.31%)	0	1	0	0	0	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.31%)	0	0	0	1	0	0	0	0
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	1 (0.31%)	0	0	0	0	0	0	0	1
17.8	hormone metabolism.salicylic acid	1 (0.31%)	0	0	1	0	0	0	0	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	1 (0.31%)	0	0	1	0	0	0	0	0
2.2.2	major CHO metabolism.degradation.starch	1 (0.31%)	0	0	0	0	1	0	0	0
2.2.2.2	major CHO metabolism.degradation.starch.starch phosphorylase	1 (0.31%)	0	0	0	0	1	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.31%)	1	0	0	0	0	0	0	0
20.2.3	stress.abiotic.drought/salt	1 (0.31%)	1	0	0	0	0	0	0	0
22	polyamine metabolism	1 (0.31%)	0	0	0	0	0	0	0	1
22.1	polyamine metabolism.synthesis	1 (0.31%)	0	0	0	0	0	0	0	1
22.1.6	polyamine metabolism.synthesis.spermidine synthase	1 (0.31%)	0	0	0	0	0	0	0	1
23.1	nucleotide metabolism.synthesis	1 (0.31%)	0	0	0	0	1	0	0	0
23.1.3	nucleotide metabolism.synthesis.PRS-PP	1 (0.31%)	0	0	0	0	1	0	0	0
23.2	nucleotide metabolism.degradation	1 (0.31%)	0	1	0	0	0	0	0	0
26.22	misc.short chain dehydrogenase/reductase (SDR)	1 (0.31%)	0	0	0	0	1	0	0	0
26.28	misc.GDSL-motif lipase	1 (0.31%)	0	1	0	0	0	0	0	0
26.7	misc.oxidases - copper, flavone etc	1 (0.31%)	0	0	0	0	0	0	0	1
27.1.1	RNA.processing.splicing	1 (0.31%)	0	0	0	0	0	0	0	1
27.1.2	RNA.processing.RNA helicase	1 (0.31%)	0	0	0	0	1	0	0	0
27.2	RNA.transcription	1 (0.31%)	0	0	0	0	1	0	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	1 (0.31%)	1	0	0	0	0	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.31%)	0	0	0	0	1	0	0	0
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	1 (0.31%)	0	0	0	0	0	0	0	1
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.31%)	0	0	0	1	0	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.31%)	0	0	0	0	0	1	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.31%)	0	0	0	0	0	0	0	1
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.31%)	0	1	0	0	0	0	0	0
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	1 (0.31%)	0	0	0	0	0	0	0	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	1 (0.31%)	0	0	1	0	0	0	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	1 (0.31%)	0	0	0	1	0	0	0	0
4.1	glycolysis.cytosolic branch	1 (0.31%)	0	0	0	1	0	0	0	0
27.4	RNA.RNA binding	1 (0.31%)	0	0	0	0	0	0	1	0
28.99	DNA.unspecified	1 (0.31%)	0	0	0	0	0	0	1	0
29.2	protein.synthesis	1 (0.31%)	0	0	0	1	0	0	0	0
29.2.1.1.2.2.2	protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.50S subunit.L2	1 (0.31%)	0	0	0	0	0	0	1	0
29.2.1.2.1.6	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S6	1 (0.31%)	0	0	0	0	0	0	1	0
29.2.4	protein.synthesis.elongation	1 (0.31%)	0	0	0	1	0	0	0	0
29.5.1	protein.degradation.subtilases	1 (0.31%)	1	0	0	0	0	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.31%)	0	0	0	1	0	0	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.31%)	0	0	0	0	0	0	1	0
29.5.5	protein.degradation.serine protease	1 (0.31%)	0	0	0	0	1	0	0	0
31.3.1	cell.cycle.peptidylprolyl isomerase	1 (0.31%)	0	0	0	0	0	0	0	1
33.30	development.multitarget	1 (0.31%)	0	1	0	0	0	0	0	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.31%)	0	0	0	1	0	0	0	0
33.30.1	development.multitarget.target of rapamycin	1 (0.31%)	0	1	0	0	0	0	0	0
34.1	transport.p- and v-ATPases	1 (0.31%)	0	0	0	0	0	1	0	0
34.12	transport.metal	1 (0.31%)	0	0	0	1	0	0	0	0
34.13	transport.peptides and oligopeptides	1 (0.31%)	0	0	0	0	1	0	0	0
34.14	transport.unspecified cations	1 (0.31%)	0	0	0	1	0	0	0	0
34.22	transport.cyclic nucleotide or calcium regulated channels	1 (0.31%)	1	0	0	0	0	0	0	0
34.7	transport.phosphate	1 (0.31%)	1	0	0	0	0	0	0	0
34.99	transport.misc	1 (0.31%)	0	0	0	1	0	0	0	0
4.1.15	glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC)	1 (0.31%)	0	0	0	1	0	0	0	0