PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_361
Name: AT1G25550
Description: N/A

#Associated genes: 557
#Associated MapMan terms: 208

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	101 (18.13%)	5	9	4	33	25	7	8	10
27.3	RNA.regulation of transcription	88 (15.80%)	5	6	4	28	23	7	6	9
30	signalling	37 (6.64%)	1	2	3	10	7	4	2	8
29	protein	34 (6.10%)	3	5	1	6	7	3	2	7
17	hormone metabolism	25 (4.49%)	1	1	2	8	5	3	2	3
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	21 (3.77%)	0	0	2	9	6	3	0	1
31	cell	18 (3.23%)	2	2	1	7	3	0	0	3
29.4	protein.postranslational modification	17 (3.05%)	1	3	0	2	4	2	1	4
33	development	17 (3.05%)	2	1	1	5	3	1	2	2
33.99	development.unspecified	17 (3.05%)	2	1	1	5	3	1	2	2
34	transport	17 (3.05%)	1	2	3	4	1	3	1	2
26	misc	16 (2.87%)	0	2	1	5	3	1	2	2
28	DNA	16 (2.87%)	0	0	1	1	5	6	1	2
29.5	protein.degradation	15 (2.69%)	1	2	1	3	3	1	1	3
20	stress	12 (2.15%)	1	1	1	5	3	0	0	1
30.2	signalling.receptor kinases	12 (2.15%)	0	2	0	2	2	1	1	4
16	secondary metabolism	11 (1.97%)	0	0	2	2	2	2	1	2
20.2	stress.abiotic	10 (1.80%)	1	1	1	3	3	0	0	1
26.10	misc.cytochrome P450	10 (1.80%)	0	1	1	3	2	0	2	1
27.3.99	RNA.regulation of transcription.unclassified	10 (1.80%)	1	2	0	3	3	0	1	0
17.2	hormone metabolism.auxin	9 (1.62%)	0	0	0	5	1	1	1	1
30.3	signalling.calcium	9 (1.62%)	0	0	2	2	2	0	0	3
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	8 (1.44%)	0	0	0	4	3	0	1	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	8 (1.44%)	1	0	0	3	1	0	2	1
28.1	DNA.synthesis/chromatin structure	8 (1.44%)	0	0	1	0	2	5	0	0
16.1	secondary metabolism.isoprenoids	7 (1.26%)	0	0	1	2	1	2	0	1
17.6	hormone metabolism.gibberelin	7 (1.26%)	0	0	1	2	2	1	0	1
17.6.1	hormone metabolism.gibberelin.synthesis-degradation	7 (1.26%)	0	0	1	2	2	1	0	1
17.6.1.1	hormone metabolism.gibberelin.synthesis-degradation.copalyl diphosphate synthase	7 (1.26%)	0	0	1	2	2	1	0	1
27.3.40	RNA.regulation of transcription.Aux/IAA family	7 (1.26%)	0	0	0	3	2	1	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	7 (1.26%)	0	1	0	2	1	0	0	3
30.4	signalling.phosphinositides	7 (1.26%)	0	0	0	4	1	1	0	1
1	PS	6 (1.08%)	0	0	0	0	0	1	4	1
23	nucleotide metabolism	6 (1.08%)	0	1	0	2	1	1	1	0
27.4	RNA.RNA binding	6 (1.08%)	0	2	0	3	1	0	0	0
28.2	DNA.repair	6 (1.08%)	0	0	0	1	2	1	0	2
29.5.11	protein.degradation.ubiquitin	6 (1.08%)	0	1	0	2	1	0	0	2
30.5	signalling.G-proteins	6 (1.08%)	1	0	0	2	1	1	1	0
31.3	cell.cycle	6 (1.08%)	1	0	0	3	2	0	0	0
1.1	PS.lightreaction	5 (0.90%)	0	0	0	0	0	1	4	0
2	major CHO metabolism	5 (0.90%)	0	0	1	2	0	0	1	1
17.2.2	hormone metabolism.auxin.signal transduction	5 (0.90%)	0	0	0	3	0	1	0	1
2.2	major CHO metabolism.degradation	5 (0.90%)	0	0	1	2	0	0	1	1
9	mitochondrial electron transport / ATP synthesis	5 (0.90%)	0	0	0	2	0	0	2	1
21	redox	5 (0.90%)	2	0	0	0	2	1	0	0
22	polyamine metabolism	5 (0.90%)	0	1	1	2	0	0	0	1
22.1	polyamine metabolism.synthesis	5 (0.90%)	0	1	1	2	0	0	0	1
22.1.2	polyamine metabolism.synthesis.SAM decarboxylase	5 (0.90%)	0	1	1	2	0	0	0	1
27.1	RNA.processing	5 (0.90%)	0	1	0	2	1	0	0	1
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	5 (0.90%)	0	2	0	2	0	0	0	1
29.4.1	protein.postranslational modification.kinase	5 (0.90%)	0	0	0	0	2	1	0	2
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	5 (0.90%)	0	0	0	0	2	1	0	2
29.5.1	protein.degradation.subtilases	5 (0.90%)	0	0	1	0	2	1	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	5 (0.90%)	0	1	0	2	1	0	0	1
30.2.17	signalling.receptor kinases.DUF 26	5 (0.90%)	0	1	0	0	1	1	1	1
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	5 (0.90%)	0	0	0	2	0	0	2	1
31.1	cell.organisation	5 (0.90%)	1	1	0	0	1	0	0	2
34.3	transport.amino acids	5 (0.90%)	0	0	1	1	0	2	1	0
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	5 (0.90%)	0	0	0	2	0	0	2	1
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	4 (0.72%)	0	0	0	0	0	0	4	0
13	amino acid metabolism	4 (0.72%)	1	1	0	0	1	0	1	0
13.1	amino acid metabolism.synthesis	4 (0.72%)	1	1	0	0	1	0	1	0
13.1.3	amino acid metabolism.synthesis.aspartate family	4 (0.72%)	1	1	0	0	1	0	1	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	4 (0.72%)	0	0	1	2	0	1	0	0
17.1.1.1.10	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	4 (0.72%)	1	0	0	0	2	0	0	1
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	4 (0.72%)	0	0	0	2	1	0	1	0
2.2.1	major CHO metabolism.degradation.sucrose	4 (0.72%)	0	0	1	2	0	0	0	1
2.2.1.3	major CHO metabolism.degradation.sucrose.invertases	4 (0.72%)	0	0	1	2	0	0	0	1
20.2.3	stress.abiotic.drought/salt	4 (0.72%)	0	1	0	0	2	0	0	1
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	4 (0.72%)	0	0	1	0	1	1	0	1
29.2.1.1.1.1.7	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S7	4 (0.72%)	0	0	0	0	0	0	4	0
29.5.11.3	protein.degradation.ubiquitin.E2	4 (0.72%)	0	0	0	2	1	0	0	1
31.2	cell.division	4 (0.72%)	0	1	1	2	0	0	0	0
8	TCA / org transformation	3 (0.54%)	0	2	0	1	0	0	0	0
13.1.3.1	amino acid metabolism.synthesis.aspartate family.asparagine	3 (0.54%)	1	0	0	0	1	0	1	0
13.1.3.1.1	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	3 (0.54%)	1	0	0	0	1	0	1	0
20.2.1	stress.abiotic.heat	3 (0.54%)	0	0	0	2	1	0	0	0
8.1	TCA / org transformation.TCA	3 (0.54%)	0	2	0	1	0	0	0	0
10	cell wall	3 (0.54%)	1	1	0	0	0	0	0	1
17.4	hormone metabolism.cytokinin	3 (0.54%)	0	0	0	0	1	1	0	1
21.4	redox.glutaredoxins	3 (0.54%)	2	0	0	0	0	1	0	0
23.2	nucleotide metabolism.degradation	3 (0.54%)	0	0	0	1	1	0	1	0
27.1.20	RNA.processing.degradation dicer	3 (0.54%)	0	1	0	2	0	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	3 (0.54%)	1	0	0	2	0	0	0	0
30.4.5	signalling.phosphinositides.inositol-1,3,4-trisphosphate 5/6-kinase	3 (0.54%)	0	0	0	1	1	0	0	1
8.1.3	TCA / org transformation.TCA.aconitase	3 (0.54%)	0	2	0	1	0	0	0	0
3	minor CHO metabolism	2 (0.36%)	0	1	0	1	0	0	0	0
3.5	minor CHO metabolism.others	2 (0.36%)	0	1	0	1	0	0	0	0
12	N-metabolism	2 (0.36%)	1	0	0	0	0	0	0	1
12.2	N-metabolism.ammonia metabolism	2 (0.36%)	1	0	0	0	0	0	0	1
12.2.99	N-metabolism.ammonia metabolism.unspecified	2 (0.36%)	1	0	0	0	0	0	0	1
16.1.3	secondary metabolism.isoprenoids.tocopherol biosynthesis	2 (0.36%)	0	0	0	0	0	1	0	1
16.1.3.3	secondary metabolism.isoprenoids.tocopherol biosynthesis.MPBQ/MSBQ methyltransferase	2 (0.36%)	0	0	0	0	0	1	0	1
16.2	secondary metabolism.phenylpropanoids	2 (0.36%)	0	0	0	0	1	0	1	0
16.8	secondary metabolism.flavonoids	2 (0.36%)	0	0	1	0	0	0	0	1
16.8.5	secondary metabolism.flavonoids.isoflavones	2 (0.36%)	0	0	1	0	0	0	0	1
16.8.5.1	secondary metabolism.flavonoids.isoflavones.isoflavone reductase	2 (0.36%)	0	0	1	0	0	0	0	1
17.3	hormone metabolism.brassinosteroid	2 (0.36%)	1	0	0	0	1	0	0	0
17.3.2	hormone metabolism.brassinosteroid.signal transduction	2 (0.36%)	1	0	0	0	1	0	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	2 (0.36%)	0	0	0	0	1	0	0	1
17.5	hormone metabolism.ethylene	2 (0.36%)	0	0	0	1	0	0	1	0
18	Co-factor and vitamine metabolism	2 (0.36%)	1	0	0	0	1	0	0	0
18.5	Co-factor and vitamine metabolism.folate & vitamine K	2 (0.36%)	1	0	0	0	1	0	0	0
18.5.2	Co-factor and vitamine metabolism.folate & vitamine K.vitamine K	2 (0.36%)	1	0	0	0	1	0	0	0
18.5.2.1	Co-factor and vitamine metabolism.folate & vitamine K.vitamine K.isochorismate synthase	2 (0.36%)	1	0	0	0	1	0	0	0
2.2.1.3.1	major CHO metabolism.degradation.sucrose.invertases.neutral	2 (0.36%)	0	0	1	1	0	0	0	0
2.2.1.3.3	major CHO metabolism.degradation.sucrose.invertases.vacuolar	2 (0.36%)	0	0	0	1	0	0	0	1
20.1	stress.biotic	2 (0.36%)	0	0	0	2	0	0	0	0
21.1	redox.thioredoxin	2 (0.36%)	0	0	0	0	2	0	0	0
23.2.1	nucleotide metabolism.degradation.pyrimidine	2 (0.36%)	0	0	0	1	1	0	0	0
23.2.1.2	nucleotide metabolism.degradation.pyrimidine.uridine nucleosidase	2 (0.36%)	0	0	0	1	1	0	0	0
26.13	misc.acid and other phosphatases	2 (0.36%)	0	0	0	1	0	1	0	0
26.27	misc.calcineurin-like phosphoesterase family protein	2 (0.36%)	0	0	0	1	0	0	0	1
27.2	RNA.transcription	2 (0.36%)	0	0	0	0	0	0	2	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	2 (0.36%)	0	0	0	0	1	1	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	2 (0.36%)	1	0	0	0	1	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	2 (0.36%)	0	0	1	0	0	0	0	1
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	2 (0.36%)	0	1	0	0	0	0	1	0
27.3.52	RNA.regulation of transcription.Global transcription factor group	2 (0.36%)	0	0	0	2	0	0	0	0
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	2 (0.36%)	0	0	0	0	2	0	0	0
28.99	DNA.unspecified	2 (0.36%)	0	0	0	0	1	0	1	0
29.5.11.2	protein.degradation.ubiquitin.E1	2 (0.36%)	0	1	0	0	0	0	0	1
29.5.5	protein.degradation.serine protease	2 (0.36%)	0	0	0	1	0	0	1	0
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	2 (0.36%)	0	0	0	1	0	1	0	0
31.4	cell.vesicle transport	2 (0.36%)	0	0	0	1	0	0	0	1
34.12	transport.metal	2 (0.36%)	0	0	1	0	0	0	0	1
34.14	transport.unspecified cations	2 (0.36%)	1	0	0	0	0	1	0	0
34.22	transport.cyclic nucleotide or calcium regulated channels	2 (0.36%)	0	0	0	2	0	0	0	0
34.4	transport.nitrate	2 (0.36%)	0	0	0	1	0	0	0	1
1.1.4	PS.lightreaction.ATP synthase	1 (0.18%)	0	0	0	0	0	1	0	0
1.1.4.4	PS.lightreaction.ATP synthase.gamma chain	1 (0.18%)	0	0	0	0	0	1	0	0
1.3	PS.calvin cycle	1 (0.18%)	0	0	0	0	0	0	0	1
1.3.6	PS.calvin cycle.aldolase	1 (0.18%)	0	0	0	0	0	0	0	1
4	glycolysis	1 (0.18%)	0	0	0	1	0	0	0	0
10.5	cell wall.cell wall proteins	1 (0.18%)	1	0	0	0	0	0	0	0
10.5.1	cell wall.cell wall proteins.AGPs	1 (0.18%)	1	0	0	0	0	0	0	0
10.5.1.1	cell wall.cell wall proteins.AGPs.AGP	1 (0.18%)	1	0	0	0	0	0	0	0
10.6	cell wall.degradation	1 (0.18%)	0	0	0	0	0	0	0	1
10.6.2	cell wall.degradation.mannan-xylose-arabinose-fucose	1 (0.18%)	0	0	0	0	0	0	0	1
10.8	cell wall.pectin*esterases	1 (0.18%)	0	1	0	0	0	0	0	0
10.8.1	cell wall.pectin*esterases.PME	1 (0.18%)	0	1	0	0	0	0	0	0
11	lipid metabolism	1 (0.18%)	0	0	0	0	0	0	0	1
11.1	lipid metabolism.FA synthesis and FA elongation	1 (0.18%)	0	0	0	0	0	0	0	1
11.1.10	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	1 (0.18%)	0	0	0	0	0	0	0	1
13.1.3.5	amino acid metabolism.synthesis.aspartate family.lysine	1 (0.18%)	0	1	0	0	0	0	0	0
15	metal handling	1 (0.18%)	0	0	0	1	0	0	0	0
15.2	metal handling.binding, chelation and storage	1 (0.18%)	0	0	0	1	0	0	0	0
16.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway	1 (0.18%)	0	0	0	0	1	0	0	0
16.1.1.2	secondary metabolism.isoprenoids.non-mevalonate pathway.DXR	1 (0.18%)	0	0	0	0	1	0	0	0
17.1	hormone metabolism.abscisic acid	1 (0.18%)	0	0	1	0	0	0	0	0
17.1.1	hormone metabolism.abscisic acid.synthesis-degradation	1 (0.18%)	0	0	1	0	0	0	0	0
17.3.2.1	hormone metabolism.brassinosteroid.signal transduction.BRI	1 (0.18%)	1	0	0	0	0	0	0	0
17.3.2.2	hormone metabolism.brassinosteroid.signal transduction.BZR	1 (0.18%)	0	0	0	0	1	0	0	0
17.4.2	hormone metabolism.cytokinin.signal transduction	1 (0.18%)	0	0	0	0	0	1	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	1 (0.18%)	0	0	0	1	0	0	0	0
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	1 (0.18%)	0	0	0	0	0	0	1	0
17.7	hormone metabolism.jasmonate	1 (0.18%)	0	1	0	0	0	0	0	0
17.7.2	hormone metabolism.jasmonate.signal transduction	1 (0.18%)	0	1	0	0	0	0	0	0
19.10	tetrapyrrole synthesis.magnesium chelatase	1 (0.18%)	0	0	0	0	0	0	0	1
2.2.2	major CHO metabolism.degradation.starch	1 (0.18%)	0	0	0	0	0	0	1	0
2.2.2.10	major CHO metabolism.degradation.starch.laforin like phosphoglucan phosphatase (SEX4)	1 (0.18%)	0	0	0	0	0	0	1	0
19	tetrapyrrole synthesis	1 (0.18%)	0	0	0	0	0	0	0	1
20.2.99	stress.abiotic.unspecified	1 (0.18%)	0	0	0	1	0	0	0	0
23.1	nucleotide metabolism.synthesis	1 (0.18%)	0	0	0	1	0	0	0	0
23.1.3	nucleotide metabolism.synthesis.PRS-PP	1 (0.18%)	0	0	0	1	0	0	0	0
23.3	nucleotide metabolism.salvage	1 (0.18%)	0	1	0	0	0	0	0	0
23.3.3	nucleotide metabolism.salvage.NUDIX hydrolases	1 (0.18%)	0	1	0	0	0	0	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	1 (0.18%)	0	0	0	0	0	1	0	0
23.4.2	nucleotide metabolism.phosphotransfer and pyrophosphatases.guanylate kinase	1 (0.18%)	0	0	0	0	0	1	0	0
26.24	misc.GCN5-related N-acetyltransferase	1 (0.18%)	0	1	0	0	0	0	0	0
26.7	misc.oxidases - copper, flavone etc	1 (0.18%)	0	0	0	0	1	0	0	0
27.1.2	RNA.processing.RNA helicase	1 (0.18%)	0	0	0	0	1	0	0	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	1 (0.18%)	0	0	0	0	1	0	0	0
27.3.17	RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family	1 (0.18%)	0	0	0	0	0	0	0	1
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.18%)	0	1	0	0	0	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.18%)	0	0	0	0	1	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.18%)	0	0	0	0	0	0	0	1
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.18%)	0	0	0	0	1	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (0.18%)	0	0	0	0	0	0	0	1
27.3.57	RNA.regulation of transcription.JUMONJI family	1 (0.18%)	0	0	0	0	0	1	0	0
27.3.59	RNA.regulation of transcription.Methyl binding domain proteins	1 (0.18%)	0	0	0	0	0	0	1	0
27.3.68	RNA.regulation of transcription.PWWP domain protein	1 (0.18%)	1	0	0	0	0	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.18%)	0	0	0	0	0	1	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	1 (0.18%)	0	0	0	0	0	1	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	1 (0.18%)	0	0	0	0	0	1	0	0
29.2	protein.synthesis	1 (0.18%)	1	0	0	0	0	0	0	0
29.2.1.1.1.2.16	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L16	1 (0.18%)	0	0	0	0	0	0	1	0
29.2.1.1.1.2.2	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L2	1 (0.18%)	0	0	0	0	1	0	0	0
29.2.1.1.2.1.4	protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.30S subunit.S4	1 (0.18%)	0	0	0	0	0	0	1	0
29.2.1.2.2.99	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.unknown	1 (0.18%)	0	1	0	0	0	0	0	0
29.2.3	protein.synthesis.initiation	1 (0.18%)	1	0	0	0	0	0	0	0
29.3	protein.targeting	1 (0.18%)	0	0	0	1	0	0	0	0
29.3.1	protein.targeting.nucleus	1 (0.18%)	0	0	0	1	0	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.18%)	0	1	0	0	0	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.18%)	1	0	0	0	0	0	0	0
30.10	signalling.phosphorelay	1 (0.18%)	0	0	1	0	0	0	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	1 (0.18%)	0	1	0	0	0	0	0	0
4.2	glycolysis.plastid branch	1 (0.18%)	0	0	0	1	0	0	0	0
30.7	signalling.14-3-3 proteins	1 (0.18%)	0	0	0	0	0	1	0	0
30.8	signalling.misc	1 (0.18%)	0	0	0	0	1	0	0	0
31.3.1	cell.cycle.peptidylprolyl isomerase	1 (0.18%)	0	0	0	1	0	0	0	0
31.5	cell.cell death	1 (0.18%)	0	0	0	1	0	0	0	0
31.5.1	cell.cell death.plants	1 (0.18%)	0	0	0	1	0	0	0	0
34.5	transport.ammonium	1 (0.18%)	0	1	0	0	0	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	1 (0.18%)	0	0	1	0	0	0	0	0
34.98	transport.membrane system unknown	1 (0.18%)	0	0	0	0	1	0	0	0
34.99	transport.misc	1 (0.18%)	0	1	0	0	0	0	0	0
4.2.4	glycolysis.plastid branch.phosphofructokinase (PFK)	1 (0.18%)	0	0	0	1	0	0	0	0