PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_312
Name: ARF11;MP;ARF6;IAA21;ARF8;ARF4
Description: N/A

#Associated genes: 921
#Associated MapMan terms: 197

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	190 (20.63%)	11	14	4	69	47	14	12	19
27.3	RNA.regulation of transcription	171 (18.57%)	8	14	4	60	42	14	11	18
29	protein	62 (6.73%)	4	10	1	18	10	4	5	10
30	signalling	55 (5.97%)	4	3	1	8	21	6	6	6
17	hormone metabolism	43 (4.67%)	3	7	2	8	11	2	2	8
10	cell wall	40 (4.34%)	6	5	2	11	6	6	2	2
29.4	protein.postranslational modification	38 (4.13%)	4	7	1	10	4	2	2	8
26	misc	34 (3.69%)	0	1	1	10	10	5	1	6
31	cell	31 (3.37%)	2	4	0	6	9	4	3	3
30.2	signalling.receptor kinases	30 (3.26%)	3	2	1	4	11	5	1	3
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	28 (3.04%)	2	3	0	10	5	4	3	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	26 (2.82%)	2	2	1	4	8	5	1	3
17.5	hormone metabolism.ethylene	25 (2.71%)	3	5	0	3	5	2	2	5
27.3.40	RNA.regulation of transcription.Aux/IAA family	24 (2.61%)	0	1	0	12	6	2	2	1
20	stress	21 (2.28%)	3	5	2	5	1	2	3	0
27.3.99	RNA.regulation of transcription.unclassified	21 (2.28%)	1	3	2	3	6	0	2	4
34	transport	21 (2.28%)	3	1	0	7	3	2	3	2
17.5.1	hormone metabolism.ethylene.synthesis-degradation	20 (2.17%)	2	5	0	1	4	2	2	4
29.4.1	protein.postranslational modification.kinase	19 (2.06%)	1	3	0	3	3	2	2	5
33	development	19 (2.06%)	2	0	0	2	7	2	2	4
31.3	cell.cycle	18 (1.95%)	1	4	0	3	4	2	1	3
10.6	cell wall.degradation	17 (1.85%)	3	3	0	4	2	2	1	2
20.2	stress.abiotic	17 (1.85%)	2	4	0	5	1	2	3	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	17 (1.85%)	0	3	0	3	3	2	1	5
17.5.1.1	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase	16 (1.74%)	2	4	0	0	3	2	2	3
33.99	development.unspecified	16 (1.74%)	2	0	0	1	7	1	2	3
27.3.64	RNA.regulation of transcription.PHOR1	14 (1.52%)	1	2	0	3	3	1	1	3
27.3.67	RNA.regulation of transcription.putative transcription regulator	14 (1.52%)	2	3	1	3	2	0	1	2
29.5	protein.degradation	14 (1.52%)	0	2	0	4	3	2	2	1
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	13 (1.41%)	3	3	0	3	2	1	0	1
27.1	RNA.processing	13 (1.41%)	1	0	0	9	3	0	0	0
20.2.3	stress.abiotic.drought/salt	12 (1.30%)	1	3	0	4	0	2	2	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	12 (1.30%)	1	1	0	5	3	0	1	1
30.3	signalling.calcium	11 (1.19%)	0	1	0	2	4	0	3	1
21	redox	10 (1.09%)	3	2	0	2	1	1	1	0
27.3.80	RNA.regulation of transcription.zf-HD	10 (1.09%)	0	0	0	4	2	2	0	2
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	10 (1.09%)	2	0	0	2	2	1	2	1
10.2	cell wall.cellulose synthesis	9 (0.98%)	2	0	2	2	1	1	1	0
10.7	cell wall.modification	9 (0.98%)	1	1	0	4	1	2	0	0
13	amino acid metabolism	9 (0.98%)	1	1	0	2	3	1	0	1
13.1	amino acid metabolism.synthesis	8 (0.87%)	1	1	0	2	2	1	0	1
17.2	hormone metabolism.auxin	8 (0.87%)	0	0	1	0	4	0	0	3
21.4	redox.glutaredoxins	8 (0.87%)	2	2	0	1	1	1	1	0
26.3	misc.gluco-, galacto- and mannosidases	8 (0.87%)	0	0	0	1	2	2	1	2
29.3	protein.targeting	8 (0.87%)	0	1	0	3	3	0	0	1
31.1	cell.organisation	8 (0.87%)	1	0	0	2	2	2	1	0
10.2.1	cell wall.cellulose synthesis.cellulose synthase	7 (0.76%)	2	0	1	2	0	1	1	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	7 (0.76%)	0	0	1	0	4	0	0	2
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	7 (0.76%)	0	0	0	4	1	1	0	1
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	7 (0.76%)	0	0	0	4	3	0	0	0
29.3.4	protein.targeting.secretory pathway	7 (0.76%)	0	1	0	3	2	0	0	1
11	lipid metabolism	6 (0.65%)	1	0	2	0	1	0	1	1
17.1	hormone metabolism.abscisic acid	6 (0.65%)	0	1	1	3	1	0	0	0
27.1.1	RNA.processing.splicing	6 (0.65%)	0	0	0	5	1	0	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	6 (0.65%)	1	0	0	0	3	1	0	1
28	DNA	6 (0.65%)	0	0	0	3	2	0	1	0
29.5.5	protein.degradation.serine protease	6 (0.65%)	0	1	0	1	1	1	1	1
11.8	lipid metabolism.exotics(steroids, squalene etc)	5 (0.54%)	1	0	2	0	1	0	0	1
13.1.3	amino acid metabolism.synthesis.aspartate family	5 (0.54%)	1	0	0	1	1	1	0	1
13.1.3.5	amino acid metabolism.synthesis.aspartate family.lysine	5 (0.54%)	1	0	0	1	1	1	0	1
17.5.2	hormone metabolism.ethylene.signal transduction	5 (0.54%)	1	0	0	2	1	0	0	1
26.4	misc.beta 1,3 glucan hydrolases	5 (0.54%)	0	1	0	2	2	0	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	5 (0.54%)	0	1	0	1	3	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	5 (0.54%)	0	1	0	1	2	0	0	1
30.11	signalling.light	5 (0.54%)	1	0	0	0	2	0	1	1
10.6.1	cell wall.degradation.cellulases and beta -1,4-glucanases	4 (0.43%)	0	0	0	1	0	1	1	1
13.1.3.5.5	amino acid metabolism.synthesis.aspartate family.lysine.diaminopimelate decarboxylase	4 (0.43%)	1	0	0	1	1	1	0	0
17.1.1	hormone metabolism.abscisic acid.synthesis-degradation	4 (0.43%)	0	1	0	2	1	0	0	0
20.1	stress.biotic	4 (0.43%)	1	1	2	0	0	0	0	0
26.10	misc.cytochrome P450	4 (0.43%)	0	0	0	1	2	0	0	1
26.2	misc.UDP glucosyl and glucoronyl transferases	4 (0.43%)	0	0	0	1	2	1	0	0
26.3.4	misc.gluco-, galacto- and mannosidases.endoglucanase	4 (0.43%)	0	0	0	1	0	1	1	1
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	4 (0.43%)	0	0	0	3	1	0	0	0
27.4	RNA.RNA binding	4 (0.43%)	1	0	0	0	1	0	1	1
29.5.11	protein.degradation.ubiquitin	4 (0.43%)	0	0	0	1	2	1	0	0
30.5	signalling.G-proteins	4 (0.43%)	0	0	0	2	1	1	0	0
31.4	cell.vesicle transport	4 (0.43%)	0	0	0	1	3	0	0	0
34.23	transport.hormones	4 (0.43%)	1	0	0	2	0	1	0	0
34.23.1	transport.hormones.auxin	4 (0.43%)	1	0	0	2	0	1	0	0
34.99	transport.misc	4 (0.43%)	1	0	0	2	1	0	0	0
3	minor CHO metabolism	3 (0.33%)	0	0	0	3	0	0	0	0
10.1	cell wall.precursor synthesis	3 (0.33%)	0	1	0	0	1	1	0	0
10.1.8	cell wall.precursor synthesis.GER	3 (0.33%)	0	1	0	0	1	1	0	0
17.8	hormone metabolism.salicylic acid	3 (0.33%)	0	1	0	1	1	0	0	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	3 (0.33%)	0	1	0	1	1	0	0	0
26.13	misc.acid and other phosphatases	3 (0.33%)	0	0	1	1	1	0	0	0
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	3 (0.33%)	0	0	1	0	1	1	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	3 (0.33%)	0	0	0	2	0	0	0	1
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	3 (0.33%)	0	0	0	1	1	1	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	3 (0.33%)	0	0	0	2	0	0	1	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	3 (0.33%)	0	0	0	2	1	0	0	0
27.3.54	RNA.regulation of transcription.Histone acetyltransferases	3 (0.33%)	0	1	0	1	1	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	3 (0.33%)	0	0	0	0	1	1	0	1
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	3 (0.33%)	0	0	1	1	0	0	1	0
28.2	DNA.repair	3 (0.33%)	0	0	0	2	1	0	0	0
29.2.1.2.2.24	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L24	3 (0.33%)	0	0	0	1	1	1	0	0
29.5.11.2	protein.degradation.ubiquitin.E1	3 (0.33%)	0	0	0	1	1	1	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	3 (0.33%)	1	0	0	0	2	0	0	0
34.21	transport.calcium	3 (0.33%)	0	1	0	1	0	0	1	0
3.2	minor CHO metabolism.trehalose	2 (0.22%)	0	0	0	2	0	0	0	0
10.8	cell wall.pectin*esterases	2 (0.22%)	0	0	0	1	1	0	0	0
10.8.1	cell wall.pectin*esterases.PME	2 (0.22%)	0	0	0	1	1	0	0	0
16.2	secondary metabolism.phenylpropanoids	2 (0.22%)	0	0	0	0	2	0	0	0
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	2 (0.22%)	0	0	1	1	0	0	0	0
20.1.7	stress.biotic.PR-proteins	2 (0.22%)	1	1	0	0	0	0	0	0
20.2.1	stress.abiotic.heat	2 (0.22%)	1	0	0	0	0	0	1	0
21.2	redox.ascorbate and glutathione	2 (0.22%)	1	0	0	1	0	0	0	0
26.12	misc.peroxidases	2 (0.22%)	0	0	0	0	0	2	0	0
27.2	RNA.transcription	2 (0.22%)	1	0	0	0	1	0	0	0
28.1	DNA.synthesis/chromatin structure	2 (0.22%)	0	0	0	1	0	0	1	0
29.3.4.3	protein.targeting.secretory pathway.vacuole	2 (0.22%)	0	0	0	2	0	0	0	0
29.4.1.59	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase IX	2 (0.22%)	1	0	0	0	0	0	1	0
29.5.11.4.1	protein.degradation.ubiquitin.E3.HECT	2 (0.22%)	0	0	0	0	2	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	2 (0.22%)	1	0	1	0	0	0	0	0
3.2.2	minor CHO metabolism.trehalose.TPP	2 (0.22%)	0	0	0	2	0	0	0	0
12	N-metabolism	2 (0.22%)	0	1	0	0	0	0	1	0
16	secondary metabolism	2 (0.22%)	0	0	0	0	2	0	0	0
30.10	signalling.phosphorelay	2 (0.22%)	0	0	0	0	1	0	0	1
30.8	signalling.misc	2 (0.22%)	0	0	0	0	2	0	0	0
33.1	development.storage proteins	2 (0.22%)	0	0	0	0	0	1	0	1
34.10	transport.nucleotides	2 (0.22%)	0	0	0	0	1	0	1	0
34.19	transport.Major Intrinsic Proteins	2 (0.22%)	1	0	0	0	0	0	0	1
34.19.2	transport.Major Intrinsic Proteins.TIP	2 (0.22%)	1	0	0	0	0	0	0	1
1	PS	1 (0.11%)	0	0	0	1	0	0	0	0
1.3	PS.calvin cycle	1 (0.11%)	0	0	0	1	0	0	0	0
1.3.13	PS.calvin cycle.rubisco interacting	1 (0.11%)	0	0	0	1	0	0	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.11%)	0	1	0	0	0	0	0	0
11.9	lipid metabolism.lipid degradation	1 (0.11%)	0	0	0	0	0	0	1	0
11.9.2	lipid metabolism.lipid degradation.lipases	1 (0.11%)	0	0	0	0	0	0	1	0
11.9.2.2	lipid metabolism.lipid degradation.lipases.acylglycerol lipase	1 (0.11%)	0	0	0	0	0	0	1	0
12.1	N-metabolism.nitrate metabolism	1 (0.11%)	0	1	0	0	0	0	0	0
12.1.2	N-metabolism.nitrate metabolism.nitrite reductase	1 (0.11%)	0	1	0	0	0	0	0	0
12.2	N-metabolism.ammonia metabolism	1 (0.11%)	0	0	0	0	0	0	1	0
12.2.1	N-metabolism.ammonia metabolism.glutamate synthase	1 (0.11%)	0	0	0	0	0	0	1	0
13.1.1	amino acid metabolism.synthesis.central amino acid metabolism	1 (0.11%)	0	0	0	1	0	0	0	0
13.1.1.2	amino acid metabolism.synthesis.central amino acid metabolism.aspartate	1 (0.11%)	0	0	0	1	0	0	0	0
13.1.1.2.1	amino acid metabolism.synthesis.central amino acid metabolism.aspartate.aspartate aminotransferase	1 (0.11%)	0	0	0	1	0	0	0	0
13.1.4	amino acid metabolism.synthesis.branched chain group	1 (0.11%)	0	1	0	0	0	0	0	0
13.1.4.4	amino acid metabolism.synthesis.branched chain group.leucine specific	1 (0.11%)	0	1	0	0	0	0	0	0
13.1.4.4.1	amino acid metabolism.synthesis.branched chain group.leucine specific.2-isopropylmalate synthase	1 (0.11%)	0	1	0	0	0	0	0	0
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (0.11%)	0	0	0	0	1	0	0	0
13.1.6.5	amino acid metabolism.synthesis.aromatic aa.tryptophan	1 (0.11%)	0	0	0	0	1	0	0	0
13.2	amino acid metabolism.degradation	1 (0.11%)	0	0	0	0	1	0	0	0
13.2.3	amino acid metabolism.degradation.aspartate family	1 (0.11%)	0	0	0	0	1	0	0	0
13.2.3.5	amino acid metabolism.degradation.aspartate family.lysine	1 (0.11%)	0	0	0	0	1	0	0	0
13.2.3.5.1	mino acid metabolism.degradation.aspartate family.lysine.lysine decarboxylase	1 (0.11%)	0	0	0	0	1	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	1 (0.11%)	0	0	0	0	0	0	0	1
17.4	hormone metabolism.cytokinin	1 (0.11%)	0	0	0	1	0	0	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	1 (0.11%)	0	0	0	1	0	0	0	0
20.2.2	stress.abiotic.cold	1 (0.11%)	0	1	0	0	0	0	0	0
23	nucleotide metabolism	1 (0.11%)	1	0	0	0	0	0	0	0
23.3	nucleotide metabolism.salvage	1 (0.11%)	1	0	0	0	0	0	0	0
23.3.3	nucleotide metabolism.salvage.NUDIX hydrolases	1 (0.11%)	1	0	0	0	0	0	0	0
24	Biodegradation of Xenobiotics	1 (0.11%)	0	1	0	0	0	0	0	0
26.16	misc.myrosinases-lectin-jacalin	1 (0.11%)	0	0	0	0	0	0	0	1
26.17	misc.dynamin	1 (0.11%)	0	0	0	0	0	0	0	1
26.24	misc.GCN5-related N-acetyltransferase	1 (0.11%)	0	0	0	0	0	0	0	1
26.3.2	misc.gluco-, galacto- and mannosidases.beta-galactosidase	1 (0.11%)	0	0	0	0	1	0	0	0
26.4.1	misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase	1 (0.11%)	0	1	0	0	0	0	0	0
26.5	misc.acyl transferases	1 (0.11%)	0	0	0	1	0	0	0	0
27.1.19	RNA.processing.ribonucleases	1 (0.11%)	0	0	0	0	1	0	0	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	1 (0.11%)	0	0	0	1	0	0	0	0
27.3.14	RNA.regulation of transcription.CCAAT box binding factor family, HAP2	1 (0.11%)	0	0	0	1	0	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.11%)	0	0	0	1	0	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.11%)	0	0	0	0	1	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.11%)	0	0	0	0	0	0	0	1
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.11%)	0	0	0	0	1	0	0	0
27.3.47	RNA.regulation of transcription.ELF3	1 (0.11%)	0	0	0	1	0	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.11%)	0	0	0	1	0	0	0	0
28.99	DNA.unspecified	1 (0.11%)	0	0	0	0	1	0	0	0
29.2	protein.synthesis	1 (0.11%)	0	0	0	0	0	0	1	0
29.2.1.2.1.11	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S11	1 (0.11%)	0	0	0	1	0	0	0	0
29.2.1.2.2.34	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34	1 (0.11%)	0	0	0	0	0	0	0	1
29.2.1.99.99	protein.synthesis.ribosomal protein.unknown.unknown	1 (0.11%)	0	0	0	0	1	0	0	0
29.2.2	protein.synthesis.ribosome biogenesis	1 (0.11%)	0	0	0	0	0	0	1	0
29.2.2.50	protein.synthesis.ribosome biogenesis.BRIX	1 (0.11%)	0	0	0	0	0	0	1	0
29.3.99	protein.targeting.unknown	1 (0.11%)	0	0	0	0	1	0	0	0
29.5.1	protein.degradation.subtilases	1 (0.11%)	0	0	0	0	0	0	1	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.11%)	0	0	0	0	1	0	0	0
29.5.11.4.5.2	protein.degradation.ubiquitin.E3.BTB/POZ Cullin3.BTB/POZ	1 (0.11%)	0	1	0	0	0	0	0	0
29.5.4	protein.degradation.aspartate protease	1 (0.11%)	0	0	0	1	0	0	0	0
29.5.7	protein.degradation.metalloprotease	1 (0.11%)	0	0	0	1	0	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.11%)	0	1	0	0	0	0	0	0
3.6	minor CHO metabolism.callose	1 (0.11%)	0	0	0	1	0	0	0	0
29.7	protein.glycosylation	1 (0.11%)	0	0	0	1	0	0	0	0
30.1	signalling.in sugar and nutrient physiology	1 (0.11%)	0	0	0	0	0	0	1	0
30.1.1	signalling.in sugar and nutrient physiology	1 (0.11%)	0	0	0	0	0	0	1	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.11%)	0	0	0	0	1	0	0	0
9.9	mitochondrial electron transport / ATP synthesis.F1-ATPase	1 (0.11%)	0	1	0	0	0	0	0	0
31.2	cell.division	1 (0.11%)	0	0	0	0	0	0	1	0
33.2	development.late embryogenesis abundant	1 (0.11%)	0	0	0	1	0	0	0	0
34.1	transport.p- and v-ATPases	1 (0.11%)	0	0	0	0	1	0	0	0
34.14	transport.unspecified cations	1 (0.11%)	0	0	0	1	0	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.11%)	0	0	0	1	0	0	0	0
34.2	transport.sugars	1 (0.11%)	0	0	0	0	0	0	1	0
34.22	transport.cyclic nucleotide or calcium regulated channels	1 (0.11%)	0	0	0	0	0	0	0	1
34.7	transport.phosphate	1 (0.11%)	0	0	0	0	0	1	0	0