PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_291
Name: EDF3
Description: N/A

#Associated genes: 307
#Associated MapMan terms: 119

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MapMan	Description	#Associated genes	ath	bra	gma	ptr	sly	vvi
27	RNA	64 (20.85%)	0	0	25	22	5	12
27.3	RNA.regulation of transcription	49 (15.96%)	0	0	20	15	3	11
29	protein	22 (7.17%)	0	0	9	9	1	3
29.4	protein.postranslational modification	18 (5.86%)	0	0	8	6	1	3
30	signalling	15 (4.89%)	0	0	5	4	2	4
34	transport	13 (4.23%)	0	0	3	6	2	2
31	cell	11 (3.58%)	1	0	4	4	0	2
27.4	RNA.RNA binding	10 (3.26%)	0	0	5	5	0	0
33	development	9 (2.93%)	0	0	1	5	1	2
33.99	development.unspecified	7 (2.28%)	0	0	1	3	1	2
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	6 (1.95%)	0	0	2	3	1	0
27.3.50	RNA.regulation of transcription.General Transcription	6 (1.95%)	0	0	4	1	0	1
27.3.99	RNA.regulation of transcription.unclassified	6 (1.95%)	0	0	2	2	1	1
11	lipid metabolism	5 (1.63%)	0	0	2	2	0	1
26	misc	5 (1.63%)	0	0	0	4	0	1
27.1	RNA.processing	5 (1.63%)	0	0	0	2	2	1
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	5 (1.63%)	0	0	4	0	1	0
30.11	signalling.light	5 (1.63%)	0	0	1	2	1	1
30.2	signalling.receptor kinases	5 (1.63%)	0	0	2	1	0	2
30.3	signalling.calcium	5 (1.63%)	0	0	2	1	1	1
31.1	cell.organisation	5 (1.63%)	0	0	1	3	0	1
31.4	cell.vesicle transport	5 (1.63%)	0	0	3	1	0	1
34.99	transport.misc	5 (1.63%)	0	0	3	1	0	1
10	cell wall	4 (1.30%)	0	2	1	0	0	1
11.9	lipid metabolism.lipid degradation	4 (1.30%)	0	0	2	1	0	1
17	hormone metabolism	4 (1.30%)	0	0	2	2	0	0
27.1.1	RNA.processing.splicing	4 (1.30%)	0	0	0	2	2	0
28	DNA	4 (1.30%)	0	1	2	1	0	0
1	PS	3 (0.98%)	0	0	1	2	0	0
1.1	PS.lightreaction	3 (0.98%)	0	0	1	2	0	0
10.8	cell wall.pectin*esterases	3 (0.98%)	0	2	0	0	0	1
10.8.2	cell wall.pectin*esterases.acetyl esterase	3 (0.98%)	0	2	0	0	0	1
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	3 (0.98%)	0	0	1	1	0	1
21	redox	3 (0.98%)	0	0	1	1	1	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	3 (0.98%)	0	0	2	1	0	0
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	3 (0.98%)	0	0	1	2	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	3 (0.98%)	0	0	1	0	0	2
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	3 (0.98%)	0	0	2	1	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	3 (0.98%)	0	0	1	1	0	1
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	3 (0.98%)	0	0	0	2	0	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	3 (0.98%)	0	0	0	2	0	1
29.4.1	protein.postranslational modification.kinase	3 (0.98%)	0	0	2	0	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	3 (0.98%)	0	0	2	0	0	1
29.5	protein.degradation	3 (0.98%)	0	0	0	3	0	0
34.1	transport.p- and v-ATPases	3 (0.98%)	0	0	0	1	1	1
1.1.5	PS.lightreaction.other electron carrier (ox/red)	2 (0.65%)	0	0	1	1	0	0
9	mitochondrial electron transport / ATP synthesis	2 (0.65%)	0	0	0	1	1	0
17.2	hormone metabolism.auxin	2 (0.65%)	0	0	2	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	2 (0.65%)	0	0	2	0	0	0
17.5	hormone metabolism.ethylene	2 (0.65%)	0	0	0	2	0	0
21.3	redox.heme	2 (0.65%)	0	0	1	1	0	0
26.12	misc.peroxidases	2 (0.65%)	0	0	0	1	0	1
26.5	misc.acyl transferases	2 (0.65%)	0	0	0	2	0	0
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	2 (0.65%)	0	0	1	0	0	1
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	2 (0.65%)	0	0	1	0	0	1
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	2 (0.65%)	0	0	1	0	0	1
28.1	DNA.synthesis/chromatin structure	2 (0.65%)	0	1	0	1	0	0
28.2	DNA.repair	2 (0.65%)	0	0	2	0	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	2 (0.65%)	0	1	0	1	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	2 (0.65%)	0	0	2	0	0	0
29.5.5	protein.degradation.serine protease	2 (0.65%)	0	0	0	2	0	0
30.2.17	signalling.receptor kinases.DUF 26	2 (0.65%)	0	0	0	0	0	2
30.2.99	signalling.receptor kinases.misc	2 (0.65%)	0	0	2	0	0	0
34.12	transport.metal	2 (0.65%)	0	0	0	2	0	0
1.1.1	PS.lightreaction.photosystem II	1 (0.33%)	0	0	0	1	0	0
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	1 (0.33%)	0	0	0	1	0	0
1.1.5.2	PS.lightreaction.other electron carrier (ox/red).ferredoxin	1 (0.33%)	0	0	1	0	0	0
1.1.5.4	PS.lightreaction.other electron carrier (ox/red).ferredoxin oxireductase	1 (0.33%)	0	0	0	1	0	0
3	minor CHO metabolism	1 (0.33%)	0	0	1	0	0	0
7	OPP	1 (0.33%)	0	0	0	0	0	1
8	TCA / org transformation	1 (0.33%)	0	0	0	0	0	1
10.1	cell wall.precursor synthesis	1 (0.33%)	0	0	1	0	0	0
10.1.10	cell wall.precursor synthesis.UDP-glucose 4,6-dehydratase	1 (0.33%)	0	0	1	0	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.33%)	0	0	0	1	0	0
11.8.2	lipid metabolism.exotics (steroids, squalene etc).methylsterol monooxygenase	1 (0.33%)	0	0	0	1	0	0
11.9.2	lipid metabolism.lipid degradation.lipases	1 (0.33%)	0	0	1	0	0	0
11.9.2.1	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	1 (0.33%)	0	0	1	0	0	0
11.9.3.2	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	1 (0.33%)	0	0	0	1	0	0
13	amino acid metabolism	1 (0.33%)	0	0	0	1	0	0
13.2	amino acid metabolism.degradation	1 (0.33%)	0	0	0	1	0	0
13.2.3	amino acid metabolism.degradation.aspartate family	1 (0.33%)	0	0	0	1	0	0
13.2.3.5	amino acid metabolism.degradation.aspartate family.lysine	1 (0.33%)	0	0	0	1	0	0
13.2.3.5.1	mino acid metabolism.degradation.aspartate family.lysine.lysine decarboxylase	1 (0.33%)	0	0	0	1	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.33%)	0	0	0	1	0	0
17.5.1.1	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase	1 (0.33%)	0	0	0	1	0	0
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	1 (0.33%)	0	0	0	1	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.33%)	0	0	0	0	0	1
27.1.2	RNA.processing.RNA helicase	1 (0.33%)	0	0	0	0	0	1
27.3.14	RNA.regulation of transcription.CCAAT box binding factor family, HAP2	1 (0.33%)	0	0	0	0	0	1
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.33%)	0	0	0	1	0	0
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	1 (0.33%)	0	0	0	0	1	0
29.2.1.2.2.12	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L12	1 (0.33%)	0	0	0	1	0	0
29.2.1.2.2.17	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17	1 (0.33%)	0	0	0	1	0	0
29.2.1.2.2.27	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27	1 (0.33%)	0	0	0	1	0	0
29.2.3	protein.synthesis.initiation	1 (0.33%)	0	0	1	0	0	0
3.2	minor CHO metabolism.trehalose	1 (0.33%)	0	0	1	0	0	0
20	stress	1 (0.33%)	0	0	0	0	0	1
20.1	stress.biotic	1 (0.33%)	0	0	0	0	0	1
21.1	redox.thioredoxin	1 (0.33%)	0	0	0	0	1	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	1 (0.33%)	0	0	0	1	0	0
29.2	protein.synthesis	1 (0.33%)	0	0	1	0	0	0
3.2.1	minor CHO metabolism.trehalose.TPS	1 (0.33%)	0	0	1	0	0	0
30.11.1	signalling.light.COP9 signalosome	1 (0.33%)	0	0	0	1	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	1 (0.33%)	0	0	0	0	0	1
30.2.25	signalling.receptor kinases.wall associated kinase	1 (0.33%)	0	0	0	1	0	0
7.1	OPP.oxidative PP	1 (0.33%)	0	0	0	0	0	1
8.2	TCA / org transformation.other organic acid transformations	1 (0.33%)	0	0	0	0	0	1
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	1 (0.33%)	0	0	0	0	1	0
9.9	mitochondrial electron transport / ATP synthesis.F1-ATPase	1 (0.33%)	0	0	0	1	0	0
31.3	cell.cycle	1 (0.33%)	1	0	0	0	0	0
33.1	development.storage proteins	1 (0.33%)	0	0	0	1	0	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.33%)	0	0	0	1	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.33%)	0	0	0	1	0	0
34.2	transport.sugars	1 (0.33%)	0	0	0	0	1	0
34.23	transport.hormones	1 (0.33%)	0	0	0	1	0	0
34.23.1	transport.hormones.auxin	1 (0.33%)	0	0	0	1	0	0
7.1.2	OPP.oxidative PP.6-phosphogluconolactonase	1 (0.33%)	0	0	0	0	0	1
8.2.9	TCA / org transformation.other organic acid transformatons.cyt MDH	1 (0.33%)	0	0	0	0	0	1
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	1 (0.33%)	0	0	0	0	1	0