PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_162
Name: AtPHR1
Description: N/A

#Associated genes: 537
#Associated MapMan terms: 203

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	87 (16.20%)	3	4	1	26	24	9	9	11
27.3	RNA.regulation of transcription	79 (14.71%)	3	3	1	24	22	9	8	9
29	protein	47 (8.75%)	1	1	0	13	9	7	9	7
17	hormone metabolism	27 (5.03%)	2	1	2	6	8	5	0	3
29.4	protein.postranslational modification	23 (4.28%)	1	1	0	4	5	5	4	3
28	DNA	16 (2.98%)	0	0	0	1	8	3	1	3
30	signalling	15 (2.79%)	0	0	1	5	5	1	0	3
34	transport	15 (2.79%)	0	1	0	6	5	0	2	1
29.5	protein.degradation	13 (2.42%)	0	0	0	5	2	2	3	1
31	cell	13 (2.42%)	1	0	0	5	3	0	2	2
33	development	13 (2.42%)	1	1	0	2	2	3	1	3
33.99	development.unspecified	13 (2.42%)	1	1	0	2	2	3	1	3
26	misc	12 (2.23%)	2	3	0	2	3	1	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	12 (2.23%)	0	1	0	7	2	0	1	1
16	secondary metabolism	11 (2.05%)	0	0	1	5	2	2	0	1
28.1	DNA.synthesis/chromatin structure	11 (2.05%)	0	0	0	1	6	2	1	1
20	stress	10 (1.86%)	0	0	0	3	5	1	0	1
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	10 (1.86%)	0	0	0	5	2	2	0	1
17.2	hormone metabolism.auxin	9 (1.68%)	1	0	0	2	3	1	0	2
16.1	secondary metabolism.isoprenoids	8 (1.49%)	0	0	0	4	1	2	0	1
29.3	protein.targeting	8 (1.49%)	0	0	0	4	1	0	0	3
29.5.4	protein.degradation.aspartate protease	8 (1.49%)	0	0	0	4	0	1	2	1
17.6	hormone metabolism.gibberelin	7 (1.30%)	1	0	0	2	2	1	0	1
17.6.1	hormone metabolism.gibberelin.synthesis-degradation	7 (1.30%)	1	0	0	2	2	1	0	1
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	7 (1.30%)	0	0	0	2	3	0	1	1
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	7 (1.30%)	0	0	1	1	5	0	0	0
29.3.1	protein.targeting.nucleus	7 (1.30%)	0	0	0	4	1	0	0	2
9	mitochondrial electron transport / ATP synthesis	6 (1.12%)	1	0	0	2	0	0	1	2
17.6.1.1	hormone metabolism.gibberelin.synthesis-degradation.copalyl diphosphate synthase	6 (1.12%)	0	0	0	2	2	1	0	1
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	6 (1.12%)	1	0	0	2	0	0	1	2
30.3	signalling.calcium	6 (1.12%)	0	0	0	2	1	1	0	2
31.1	cell.organisation	6 (1.12%)	0	0	0	3	0	0	2	1
31.3	cell.cycle	6 (1.12%)	1	0	0	1	3	0	0	1
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	6 (1.12%)	1	0	0	2	0	0	1	2
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	5 (0.93%)	1	0	0	1	3	0	0	0
17.4	hormone metabolism.cytokinin	5 (0.93%)	0	0	1	1	1	2	0	0
20.1	stress.biotic	5 (0.93%)	0	0	0	0	3	1	0	1
20.2	stress.abiotic	5 (0.93%)	0	0	0	3	2	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	5 (0.93%)	0	1	0	1	2	1	0	0
27.3.99	RNA.regulation of transcription.unclassified	5 (0.93%)	1	0	0	1	1	0	2	0
34.99	transport.misc	5 (0.93%)	0	0	0	2	3	0	0	0
1	PS	4 (0.74%)	0	0	0	0	0	0	3	1
1.1	PS.lightreaction	4 (0.74%)	0	0	0	0	0	0	3	1
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	4 (0.74%)	0	0	0	0	0	0	3	1
11	lipid metabolism	4 (0.74%)	0	0	0	1	0	0	0	3
13	amino acid metabolism	4 (0.74%)	1	1	0	2	0	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	4 (0.74%)	0	0	0	1	0	1	0	2
21	redox	4 (0.74%)	1	0	0	1	2	0	0	0
26.13	misc.acid and other phosphatases	4 (0.74%)	1	0	0	0	2	0	0	1
26.7	misc.oxidases - copper, flavone etc	4 (0.74%)	1	1	0	0	1	1	0	0
27.1	RNA.processing	4 (0.74%)	0	0	0	2	1	0	0	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	4 (0.74%)	0	0	0	0	2	0	1	1
27.3.29	RNA.regulation of transcription.TCP transcription factor family	4 (0.74%)	0	0	0	3	1	0	0	0
29.4.1	protein.postranslational modification.kinase	4 (0.74%)	0	0	0	0	2	1	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	4 (0.74%)	0	0	0	0	2	1	0	1
2	major CHO metabolism	3 (0.56%)	0	0	0	2	0	0	1	0
10	cell wall	3 (0.56%)	1	1	0	1	0	0	0	0
13.1	amino acid metabolism.synthesis	3 (0.56%)	1	1	0	1	0	0	0	0
13.1.3	amino acid metabolism.synthesis.aspartate family	3 (0.56%)	1	1	0	1	0	0	0	0
13.1.3.4	amino acid metabolism.synthesis.aspartate family.methionine	3 (0.56%)	1	1	0	1	0	0	0	0
16.1.4	secondary metabolism.isoprenoids.carotenoids	3 (0.56%)	0	0	0	2	1	0	0	0
16.1.4.3	secondary metabolism.isoprenoids.carotenoids.zeta-carotene desaturase	3 (0.56%)	0	0	0	2	1	0	0	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	3 (0.56%)	0	0	0	2	0	1	0	0
2.2	major CHO metabolism.degradation	3 (0.56%)	0	0	0	2	0	0	1	0
16.2	secondary metabolism.phenylpropanoids	3 (0.56%)	0	0	1	1	1	0	0	0
17.1.1.1.10	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	3 (0.56%)	0	0	0	0	2	0	0	1
17.4.2	hormone metabolism.cytokinin.signal transduction	3 (0.56%)	0	0	1	0	0	2	0	0
21.1	redox.thioredoxin	3 (0.56%)	0	0	0	1	2	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	3 (0.56%)	0	0	0	0	0	1	0	2
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	3 (0.56%)	0	0	0	2	0	1	0	0
27.3.50	RNA.regulation of transcription.General Transcription	3 (0.56%)	0	0	0	0	1	1	1	0
27.3.73	RNA.regulation of transcription.Zn-finger(CCHC)	3 (0.56%)	1	2	0	0	0	0	0	0
27.4	RNA.RNA binding	3 (0.56%)	0	1	0	0	1	0	0	1
28.99	DNA.unspecified	3 (0.56%)	0	0	0	0	1	1	0	1
29.5.11	protein.degradation.ubiquitin	3 (0.56%)	0	0	0	1	1	1	0	0
30.5	signalling.G-proteins	3 (0.56%)	0	0	0	0	2	0	0	1
4	glycolysis	2 (0.37%)	0	0	0	1	1	0	0	0
11.9	lipid metabolism.lipid degradation	2 (0.37%)	0	0	0	1	0	0	0	1
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	2 (0.37%)	0	0	0	1	0	0	0	1
11.9.3.2	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	2 (0.37%)	0	0	0	1	0	0	0	1
13.1.3.4.1	amino acid metabolism.synthesis.aspartate family.methionine.cystathionine gamma-synthase	2 (0.37%)	1	0	0	1	0	0	0	0
16.1.3	secondary metabolism.isoprenoids.tocopherol biosynthesis	2 (0.37%)	0	0	0	0	0	1	0	1
16.1.3.3	secondary metabolism.isoprenoids.tocopherol biosynthesis.MPBQ/MSBQ methyltransferase	2 (0.37%)	0	0	0	0	0	1	0	1
17.3.2	hormone metabolism.brassinosteroid.signal transduction	2 (0.37%)	0	0	1	0	1	0	0	0
17.3.2.2	hormone metabolism.brassinosteroid.signal transduction.BZR	2 (0.37%)	0	0	1	0	1	0	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	2 (0.37%)	0	0	0	1	1	0	0	0
2.2.2	major CHO metabolism.degradation.starch	2 (0.37%)	0	0	0	1	0	0	1	0
20.1.1	stress.biotic.respiratory burst	2 (0.37%)	0	0	0	0	1	1	0	0
20.2.1	stress.abiotic.heat	2 (0.37%)	0	0	0	1	1	0	0	0
20.2.3	stress.abiotic.drought/salt	2 (0.37%)	0	0	0	1	1	0	0	0
4.1	glycolysis.cytosolic branch	2 (0.37%)	0	0	0	1	1	0	0	0
4.1.12	glycolysis.cytosolic branch.phosphoglycerate mutase	2 (0.37%)	0	0	0	1	1	0	0	0
4.3	glycolysis.unclear/dually targeted	2 (0.37%)	0	0	0	1	1	0	0	0
17.1	hormone metabolism.abscisic acid	2 (0.37%)	0	0	0	1	0	1	0	0
17.3	hormone metabolism.brassinosteroid	2 (0.37%)	0	0	1	0	1	0	0	0
17.7	hormone metabolism.jasmonate	2 (0.37%)	0	1	0	0	1	0	0	0
4.3.12	glycolysis.unclear/dually targeted.phosphoglycerate mutase	2 (0.37%)	0	0	0	1	1	0	0	0
23	nucleotide metabolism	2 (0.37%)	0	0	0	1	0	1	0	0
25	C1-metabolism	2 (0.37%)	0	0	0	0	2	0	0	0
27.1.20	RNA.processing.degradation dicer	2 (0.37%)	0	0	0	2	0	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	2 (0.37%)	0	0	0	0	0	1	1	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	2 (0.37%)	0	0	0	2	0	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	2 (0.37%)	0	0	0	0	0	1	1	0
27.3.5	RNA.regulation of transcription.ARR	2 (0.37%)	0	0	0	2	0	0	0	0
27.3.52	RNA.regulation of transcription.Global transcription factor group	2 (0.37%)	0	0	0	2	0	0	0	0
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	2 (0.37%)	0	0	0	0	0	0	1	1
28.2	DNA.repair	2 (0.37%)	0	0	0	0	1	0	0	1
29.5.5	protein.degradation.serine protease	2 (0.37%)	0	0	0	0	1	0	1	0
30.2	signalling.receptor kinases	2 (0.37%)	0	0	0	1	1	0	0	0
30.4	signalling.phosphinositides	2 (0.37%)	0	0	0	2	0	0	0	0
34.15	transport.potassium	2 (0.37%)	0	1	0	0	0	0	1	0
10.1	cell wall.precursor synthesis	1 (0.19%)	0	0	0	1	0	0	0	0
10.2	cell wall.cellulose synthesis	1 (0.19%)	0	1	0	0	0	0	0	0
10.2.1	cell wall.cellulose synthesis.cellulose synthase	1 (0.19%)	0	1	0	0	0	0	0	0
10.5	cell wall.cell wall proteins	1 (0.19%)	1	0	0	0	0	0	0	0
10.5.1	cell wall.cell wall proteins.AGPs	1 (0.19%)	1	0	0	0	0	0	0	0
10.5.1.1	cell wall.cell wall proteins.AGPs.AGP	1 (0.19%)	1	0	0	0	0	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	1 (0.19%)	0	0	0	0	0	0	0	1
11.1.1	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation	1 (0.19%)	0	0	0	0	0	0	0	1
11.1.1.2	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation.heteromeric Complex	1 (0.19%)	0	0	0	0	0	0	0	1
11.1.1.2.3	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation.heteromeric Complex.Biotin Carboxyl Carrier Protein	1 (0.19%)	0	0	0	0	0	0	0	1
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.19%)	0	0	0	0	0	0	0	1
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	1 (0.19%)	0	0	0	0	0	0	0	1
11.8.1.3	lipid metabolism.exotics (steroids, squalene etc).sphingolipids.ceramide glucosyltransferase	1 (0.19%)	0	0	0	0	0	0	0	1
13.2	amino acid metabolism.degradation	1 (0.19%)	0	0	0	1	0	0	0	0
13.2.6	amino acid metabolism.degradation.aromatic aa	1 (0.19%)	0	0	0	1	0	0	0	0
13.2.6.2	amino acid metabolism.degradation.aromatic aa.tyrosine	1 (0.19%)	0	0	0	1	0	0	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	1 (0.19%)	0	0	1	0	0	0	0	0
16.2.1.3	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	1 (0.19%)	0	0	1	0	0	0	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	1 (0.19%)	0	0	0	0	0	1	0	0
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	1 (0.19%)	0	0	0	1	0	0	0	0
17.6.1.12	hormone metabolism.gibberelin.synthesis-degradation.GA3 oxidase	1 (0.19%)	1	0	0	0	0	0	0	0
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	1 (0.19%)	0	0	0	0	1	0	0	0
17.7.1.5	hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase	1 (0.19%)	0	0	0	0	1	0	0	0
17.7.2	hormone metabolism.jasmonate.signal transduction	1 (0.19%)	0	1	0	0	0	0	0	0
19.40	tetrapyrrole synthesis.regulation	1 (0.19%)	0	0	0	0	1	0	0	0
2.2.1	major CHO metabolism.degradation.sucrose	1 (0.19%)	0	0	0	1	0	0	0	0
2.2.1.3	major CHO metabolism.degradation.sucrose.invertases	1 (0.19%)	0	0	0	1	0	0	0	0
2.2.1.3.3	major CHO metabolism.degradation.sucrose.invertases.vacuolar	1 (0.19%)	0	0	0	1	0	0	0	0
2.2.2.1	major CHO metabolism.degradation.starch.starch cleavage	1 (0.19%)	0	0	0	1	0	0	0	0
2.2.2.1.2	major CHO metabolism.degradation.starch.starch cleavage.beta amylase	1 (0.19%)	0	0	0	1	0	0	0	0
2.2.2.10	major CHO metabolism.degradation.starch.laforin like phosphoglucan phosphatase (SEX4)	1 (0.19%)	0	0	0	0	0	0	1	0
3	minor CHO metabolism	1 (0.19%)	0	0	0	1	0	0	0	0
19	tetrapyrrole synthesis	1 (0.19%)	0	0	0	0	1	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.19%)	0	0	0	0	1	0	0	0
20.2.99	stress.abiotic.unspecified	1 (0.19%)	0	0	0	1	0	0	0	0
21.1.1	redox.thioredoxin.PDIL	1 (0.19%)	0	0	0	1	0	0	0	0
21.4	redox.glutaredoxins	1 (0.19%)	1	0	0	0	0	0	0	0
22	polyamine metabolism	1 (0.19%)	0	0	1	0	0	0	0	0
22.1	polyamine metabolism.synthesis	1 (0.19%)	0	0	1	0	0	0	0	0
22.1.2	polyamine metabolism.synthesis.SAM decarboxylase	1 (0.19%)	0	0	1	0	0	0	0	0
23.1	nucleotide metabolism.synthesis	1 (0.19%)	0	0	0	1	0	0	0	0
23.1.3	nucleotide metabolism.synthesis.PRS-PP	1 (0.19%)	0	0	0	1	0	0	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	1 (0.19%)	0	0	0	0	0	1	0	0
23.4.2	nucleotide metabolism.phosphotransfer and pyrophosphatases.guanylate kinase	1 (0.19%)	0	0	0	0	0	1	0	0
25.2	C1-metabolism.formate-tetrahydrofolate ligase	1 (0.19%)	0	0	0	0	1	0	0	0
26.10	misc.cytochrome P450	1 (0.19%)	0	0	0	1	0	0	0	0
26.17	misc.dynamin	1 (0.19%)	0	1	0	0	0	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.19%)	0	0	0	1	0	0	0	0
26.24	misc.GCN5-related N-acetyltransferase	1 (0.19%)	0	1	0	0	0	0	0	0
27.1.2	RNA.processing.RNA helicase	1 (0.19%)	0	0	0	0	1	0	0	0
27.2	RNA.transcription	1 (0.19%)	0	0	0	0	0	0	1	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	1 (0.19%)	0	0	0	0	1	0	0	0
27.3.17	RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family	1 (0.19%)	0	0	0	0	0	0	0	1
27.3.2	RNA.regulation of transcription.Alfin-like	1 (0.19%)	0	0	0	0	0	0	0	1
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.19%)	0	0	0	1	0	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.19%)	0	0	0	0	1	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.19%)	1	0	0	0	0	0	0	0
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	1 (0.19%)	0	0	0	0	1	0	0	0
27.3.62	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	1 (0.19%)	0	0	0	0	0	0	0	1
27.3.68	RNA.regulation of transcription.PWWP domain protein	1 (0.19%)	0	0	0	1	0	0	0	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	1 (0.19%)	0	0	0	0	0	1	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.19%)	0	0	0	0	1	0	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	1 (0.19%)	0	0	0	0	1	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.19%)	0	0	0	0	1	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	1 (0.19%)	0	0	0	0	1	0	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	1 (0.19%)	0	0	0	0	1	0	0	0
29.2	protein.synthesis	1 (0.19%)	0	0	0	0	1	0	0	0
29.2.1.1.2.1.3	protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.30S subunit.S3	1 (0.19%)	0	0	0	0	0	0	1	0
29.2.1.2.2.34	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34	1 (0.19%)	0	0	0	1	0	0	0	0
29.2.1.2.2.99	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.unknown	1 (0.19%)	0	1	0	0	0	0	0	0
29.2.3	protein.synthesis.initiation	1 (0.19%)	0	0	0	0	1	0	0	0
29.3.4	protein.targeting.secretory pathway	1 (0.19%)	0	0	0	0	0	0	0	1
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.19%)	0	0	0	0	0	0	0	1
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.19%)	0	0	0	0	1	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.19%)	0	0	1	0	0	0	0	0
29.5.11.4.5.2	protein.degradation.ubiquitin.E3.BTB/POZ Cullin3.BTB/POZ	1 (0.19%)	0	0	0	1	0	0	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.19%)	0	0	0	1	0	0	0	0
3.5	minor CHO metabolism.others	1 (0.19%)	0	0	0	1	0	0	0	0
29.6	protein.folding	1 (0.19%)	0	0	0	0	0	0	1	0
29.8	protein.assembly and cofactor ligation	1 (0.19%)	0	0	0	0	0	0	1	0
30.10	signalling.phosphorelay	1 (0.19%)	0	0	1	0	0	0	0	0
30.11	signalling.light	1 (0.19%)	0	0	0	0	1	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	1 (0.19%)	0	0	0	1	0	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.19%)	0	0	0	0	1	0	0	0
31.3.1	cell.cycle.peptidylprolyl isomerase	1 (0.19%)	0	0	0	0	0	0	0	1
31.4	cell.vesicle transport	1 (0.19%)	0	0	0	1	0	0	0	0
34.11	transport.NDP-sugars at the ER	1 (0.19%)	0	0	0	1	0	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.19%)	0	0	0	1	0	0	0	0
34.2	transport.sugars	1 (0.19%)	0	0	0	0	1	0	0	0
34.4	transport.nitrate	1 (0.19%)	0	0	0	0	0	0	1	0
34.5	transport.ammonium	1 (0.19%)	0	0	0	0	0	0	0	1
34.98	transport.membrane system unknown	1 (0.19%)	0	0	0	0	1	0	0	0