PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_16
Name: AT3G04450;PHL1
Description: N/A

#Associated genes: 479
#Associated MapMan terms: 185

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	86 (17.95%)	7	9	6	19	15	12	5	13
27.3	RNA.regulation of transcription	77 (16.08%)	7	7	6	16	14	11	5	11
29	protein	52 (10.86%)	3	3	3	11	12	10	6	4
29.4	protein.postranslational modification	27 (5.64%)	2	2	1	6	7	6	2	1
17	hormone metabolism	20 (4.18%)	2	0	0	6	6	4	0	2
29.5	protein.degradation	20 (4.18%)	1	1	2	4	3	3	3	3
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	17 (3.55%)	0	2	1	2	5	2	3	2
30	signalling	17 (3.55%)	0	0	1	4	7	2	0	3
33	development	17 (3.55%)	2	0	1	5	4	1	1	3
33.99	development.unspecified	17 (3.55%)	2	0	1	5	4	1	1	3
20	stress	14 (2.92%)	1	2	0	6	3	1	0	1
31	cell	13 (2.71%)	1	1	1	6	1	0	1	2
26	misc	10 (2.09%)	0	1	2	2	3	1	0	1
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	10 (2.09%)	0	2	2	3	2	1	0	0
16	secondary metabolism	9 (1.88%)	0	0	1	4	2	1	0	1
27.3.40	RNA.regulation of transcription.Aux/IAA family	9 (1.88%)	0	1	1	3	2	1	0	1
28	DNA	9 (1.88%)	1	0	0	1	4	2	1	0
29.4.1	protein.postranslational modification.kinase	9 (1.88%)	0	0	1	2	3	2	0	1
34	transport	9 (1.88%)	0	1	2	1	1	1	0	3
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	8 (1.67%)	1	0	0	1	2	1	1	2
29.5.4	protein.degradation.aspartate protease	8 (1.67%)	0	0	0	4	0	1	2	1
16.1	secondary metabolism.isoprenoids	7 (1.46%)	0	0	0	4	1	1	0	1
17.2	hormone metabolism.auxin	7 (1.46%)	0	0	0	3	2	1	0	1
20.1	stress.biotic	7 (1.46%)	0	1	0	4	1	1	0	0
20.2	stress.abiotic	7 (1.46%)	1	1	0	2	2	0	0	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	7 (1.46%)	2	1	0	1	2	1	0	0
30.2	signalling.receptor kinases	7 (1.46%)	0	0	0	2	2	1	0	2
9	mitochondrial electron transport / ATP synthesis	6 (1.25%)	0	0	0	3	0	0	2	1
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	6 (1.25%)	0	0	0	3	0	0	2	1
17.6	hormone metabolism.gibberelin	6 (1.25%)	1	0	0	2	2	0	0	1
17.6.1	hormone metabolism.gibberelin.synthesis-degradation	6 (1.25%)	1	0	0	2	2	0	0	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	6 (1.25%)	0	0	0	2	0	1	2	1
27.3.99	RNA.regulation of transcription.unclassified	6 (1.25%)	1	1	0	0	1	0	1	2
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	6 (1.25%)	0	0	0	3	0	0	2	1
17.2.2	hormone metabolism.auxin.signal transduction	5 (1.04%)	0	0	0	3	0	1	0	1
17.6.1.1	hormone metabolism.gibberelin.synthesis-degradation.copalyl diphosphate synthase	5 (1.04%)	0	0	0	2	2	0	0	1
21	redox	5 (1.04%)	1	1	0	1	2	0	0	0
22	polyamine metabolism	5 (1.04%)	0	1	1	2	0	0	0	1
22.1	polyamine metabolism.synthesis	5 (1.04%)	0	1	1	2	0	0	0	1
22.1.2	polyamine metabolism.synthesis.SAM decarboxylase	5 (1.04%)	0	1	1	2	0	0	0	1
27.1	RNA.processing	5 (1.04%)	0	1	0	3	0	0	0	1
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	5 (1.04%)	1	0	1	0	2	0	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	5 (1.04%)	0	0	0	2	1	0	0	2
31.1	cell.organisation	5 (1.04%)	0	0	0	2	0	0	1	2
1	PS	4 (0.84%)	0	0	0	0	0	1	2	1
1.1	PS.lightreaction	4 (0.84%)	0	0	0	0	0	1	2	1
11	lipid metabolism	4 (0.84%)	0	0	0	1	1	0	0	2
13	amino acid metabolism	4 (0.84%)	1	1	0	0	2	0	0	0
13.1	amino acid metabolism.synthesis	4 (0.84%)	1	1	0	0	2	0	0	0
20.2.1	stress.abiotic.heat	4 (0.84%)	1	0	0	2	0	0	0	1
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	4 (0.84%)	0	0	2	0	0	1	0	1
27.4	RNA.RNA binding	4 (0.84%)	0	1	0	0	1	1	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	4 (0.84%)	0	0	0	1	2	1	0	0
29.5.1	protein.degradation.subtilases	4 (0.84%)	0	0	1	0	1	1	0	1
29.5.11	protein.degradation.ubiquitin	4 (0.84%)	0	1	1	0	1	1	0	0
31.2	cell.division	4 (0.84%)	0	0	1	3	0	0	0	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	3 (0.63%)	0	0	0	0	0	0	2	1
2	major CHO metabolism	3 (0.63%)	0	1	0	1	0	0	1	0
10	cell wall	3 (0.63%)	1	1	0	0	0	0	0	1
13.1.3	amino acid metabolism.synthesis.aspartate family	3 (0.63%)	1	1	0	0	1	0	0	0
16.1.4	secondary metabolism.isoprenoids.carotenoids	3 (0.63%)	0	0	0	2	1	0	0	0
16.1.4.3	secondary metabolism.isoprenoids.carotenoids.zeta-carotene desaturase	3 (0.63%)	0	0	0	2	1	0	0	0
2.2	major CHO metabolism.degradation	3 (0.63%)	0	1	0	1	0	0	1	0
17.4	hormone metabolism.cytokinin	3 (0.63%)	0	0	0	0	1	2	0	0
26.10	misc.cytochrome P450	3 (0.63%)	0	0	1	1	1	0	0	0
26.19	misc.plastocyanin-like	3 (0.63%)	0	0	1	0	1	1	0	0
27.3.50	RNA.regulation of transcription.General Transcription	3 (0.63%)	0	0	0	0	1	1	1	0
28.1	DNA.synthesis/chromatin structure	3 (0.63%)	1	0	0	0	2	0	0	0
28.2	DNA.repair	3 (0.63%)	0	0	0	1	1	1	0	0
28.99	DNA.unspecified	3 (0.63%)	0	0	0	0	1	1	1	0
29.5.5	protein.degradation.serine protease	3 (0.63%)	0	0	0	0	1	0	1	1
30.4	signalling.phosphinositides	3 (0.63%)	0	0	0	2	0	1	0	0
30.5	signalling.G-proteins	3 (0.63%)	0	0	0	0	2	0	0	1
11.8	lipid metabolism.exotics(steroids, squalene etc)	2 (0.42%)	0	0	0	0	1	0	0	1
11.9	lipid metabolism.lipid degradation	2 (0.42%)	0	0	0	1	0	0	0	1
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	2 (0.42%)	0	0	0	1	0	0	0	1
11.9.3.2	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	2 (0.42%)	0	0	0	1	0	0	0	1
13.1.3.1	amino acid metabolism.synthesis.aspartate family.asparagine	2 (0.42%)	1	0	0	0	1	0	0	0
13.1.3.1.1	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	2 (0.42%)	1	0	0	0	1	0	0	0
16.1.3	secondary metabolism.isoprenoids.tocopherol biosynthesis	2 (0.42%)	0	0	0	0	0	1	0	1
16.1.3.3	secondary metabolism.isoprenoids.tocopherol biosynthesis.MPBQ/MSBQ methyltransferase	2 (0.42%)	0	0	0	0	0	1	0	1
16.1.5	secondary metabolism.isoprenoids.terpenoids	2 (0.42%)	0	0	0	2	0	0	0	0
16.2	secondary metabolism.phenylpropanoids	2 (0.42%)	0	0	1	0	1	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	2 (0.42%)	0	0	0	0	2	0	0	0
17.3	hormone metabolism.brassinosteroid	2 (0.42%)	1	0	0	0	1	0	0	0
17.3.2	hormone metabolism.brassinosteroid.signal transduction	2 (0.42%)	1	0	0	0	1	0	0	0
17.4.2	hormone metabolism.cytokinin.signal transduction	2 (0.42%)	0	0	0	0	0	2	0	0
2.2.1	major CHO metabolism.degradation.sucrose	2 (0.42%)	0	1	0	1	0	0	0	0
2.2.1.3	major CHO metabolism.degradation.sucrose.invertases	2 (0.42%)	0	1	0	1	0	0	0	0
2.2.1.3.3	major CHO metabolism.degradation.sucrose.invertases.vacuolar	2 (0.42%)	0	1	0	1	0	0	0	0
18	Co-factor and vitamine metabolism	2 (0.42%)	0	0	1	0	1	0	0	0
20.2.3	stress.abiotic.drought/salt	2 (0.42%)	0	1	0	0	1	0	0	0
21.1	redox.thioredoxin	2 (0.42%)	0	0	0	0	2	0	0	0
21.2	redox.ascorbate and glutathione	2 (0.42%)	0	1	0	1	0	0	0	0
26.27	misc.calcineurin-like phosphoesterase family protein	2 (0.42%)	0	0	0	1	0	0	0	1
27.1.20	RNA.processing.degradation dicer	2 (0.42%)	0	0	0	2	0	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	2 (0.42%)	0	0	0	1	0	1	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	2 (0.42%)	0	1	0	0	0	1	0	0
27.3.52	RNA.regulation of transcription.Global transcription factor group	2 (0.42%)	0	0	0	2	0	0	0	0
29.2	protein.synthesis	2 (0.42%)	0	0	0	0	1	1	0	0
29.2.3	protein.synthesis.initiation	2 (0.42%)	0	0	0	0	1	1	0	0
29.3	protein.targeting	2 (0.42%)	0	0	0	1	1	0	0	0
29.5.11.2	protein.degradation.ubiquitin.E1	2 (0.42%)	0	1	1	0	0	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	2 (0.42%)	0	0	1	0	1	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	2 (0.42%)	0	0	0	0	1	1	0	0
30.3	signalling.calcium	2 (0.42%)	0	0	0	0	2	0	0	0
31.3	cell.cycle	2 (0.42%)	1	0	0	0	1	0	0	0
34.3	transport.amino acids	2 (0.42%)	0	0	1	0	0	1	0	0
34.99	transport.misc	2 (0.42%)	0	1	0	0	0	0	0	1
1.1.4	PS.lightreaction.ATP synthase	1 (0.21%)	0	0	0	0	0	1	0	0
1.1.4.4	PS.lightreaction.ATP synthase.gamma chain	1 (0.21%)	0	0	0	0	0	1	0	0
3	minor CHO metabolism	1 (0.21%)	1	0	0	0	0	0	0	0
10.2	cell wall.cellulose synthesis	1 (0.21%)	0	1	0	0	0	0	0	0
10.2.1	cell wall.cellulose synthesis.cellulose synthase	1 (0.21%)	0	1	0	0	0	0	0	0
10.5	cell wall.cell wall proteins	1 (0.21%)	1	0	0	0	0	0	0	0
10.5.1	cell wall.cell wall proteins.AGPs	1 (0.21%)	1	0	0	0	0	0	0	0
10.5.1.1	cell wall.cell wall proteins.AGPs.AGP	1 (0.21%)	1	0	0	0	0	0	0	0
10.6	cell wall.degradation	1 (0.21%)	0	0	0	0	0	0	0	1
10.6.2	cell wall.degradation.mannan-xylose-arabinose-fucose	1 (0.21%)	0	0	0	0	0	0	0	1
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	1 (0.21%)	0	0	0	0	0	0	0	1
11.8.1.3	lipid metabolism.exotics (steroids, squalene etc).sphingolipids.ceramide glucosyltransferase	1 (0.21%)	0	0	0	0	0	0	0	1
11.8.2	lipid metabolism.exotics (steroids, squalene etc).methylsterol monooxygenase	1 (0.21%)	0	0	0	0	1	0	0	0
12	N-metabolism	1 (0.21%)	0	1	0	0	0	0	0	0
12.4	N-metabolism.misc	1 (0.21%)	0	1	0	0	0	0	0	0
13.1.3.4	amino acid metabolism.synthesis.aspartate family.methionine	1 (0.21%)	0	1	0	0	0	0	0	0
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	1 (0.21%)	0	0	0	0	1	0	0	0
13.1.5.3	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine	1 (0.21%)	0	0	0	0	1	0	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	1 (0.21%)	0	0	1	0	0	0	0	0
16.2.1.3	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	1 (0.21%)	0	0	1	0	0	0	0	0
17.1	hormone metabolism.abscisic acid	1 (0.21%)	0	0	0	0	0	1	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	1 (0.21%)	0	0	0	0	0	1	0	0
17.3.2.1	hormone metabolism.brassinosteroid.signal transduction.BRI	1 (0.21%)	1	0	0	0	0	0	0	0
17.3.2.2	hormone metabolism.brassinosteroid.signal transduction.BZR	1 (0.21%)	0	0	0	0	1	0	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	1 (0.21%)	0	0	0	0	1	0	0	0
17.5	hormone metabolism.ethylene	1 (0.21%)	0	0	0	1	0	0	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	1 (0.21%)	0	0	0	1	0	0	0	0
17.6.1.12	hormone metabolism.gibberelin.synthesis-degradation.GA3 oxidase	1 (0.21%)	1	0	0	0	0	0	0	0
2.2.2	major CHO metabolism.degradation.starch	1 (0.21%)	0	0	0	0	0	0	1	0
2.2.2.10	major CHO metabolism.degradation.starch.laforin like phosphoglucan phosphatase (SEX4)	1 (0.21%)	0	0	0	0	0	0	1	0
20.1.1	stress.biotic.respiratory burst	1 (0.21%)	0	0	0	0	1	0	0	0
20.2.99	stress.abiotic.unspecified	1 (0.21%)	0	0	0	0	1	0	0	0
3.5	minor CHO metabolism.others	1 (0.21%)	1	0	0	0	0	0	0	0
21.4	redox.glutaredoxins	1 (0.21%)	1	0	0	0	0	0	0	0
23	nucleotide metabolism	1 (0.21%)	0	0	0	0	0	1	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	1 (0.21%)	0	0	0	0	0	1	0	0
23.4.2	nucleotide metabolism.phosphotransfer and pyrophosphatases.guanylate kinase	1 (0.21%)	0	0	0	0	0	1	0	0
26.12	misc.peroxidases	1 (0.21%)	0	0	0	0	1	0	0	0
26.7	misc.oxidases - copper, flavone etc	1 (0.21%)	0	1	0	0	0	0	0	0
27.1.1	RNA.processing.splicing	1 (0.21%)	0	1	0	0	0	0	0	0
27.1.2	RNA.processing.RNA helicase	1 (0.21%)	0	0	0	1	0	0	0	0
27.3.17	RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family	1 (0.21%)	0	0	0	0	0	0	0	1
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.21%)	0	0	0	0	0	0	0	1
27.3.29	RNA.regulation of transcription.TCP transcription factor family	1 (0.21%)	0	0	0	1	0	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.21%)	0	0	0	0	1	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.21%)	0	1	0	0	0	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.21%)	1	0	0	0	0	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.21%)	0	0	0	0	0	1	0	0
27.3.57	RNA.regulation of transcription.JUMONJI family	1 (0.21%)	0	0	0	0	0	1	0	0
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	1 (0.21%)	0	0	0	0	1	0	0	0
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	1 (0.21%)	0	0	0	0	0	0	0	1
27.3.68	RNA.regulation of transcription.PWWP domain protein	1 (0.21%)	1	0	0	0	0	0	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	1 (0.21%)	0	0	0	1	0	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.21%)	0	0	0	0	1	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	1 (0.21%)	0	0	0	0	1	0	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	1 (0.21%)	0	0	0	0	1	0	0	0
29.2.1.1.1.1.7	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S7	1 (0.21%)	0	0	0	0	0	0	1	0
29.2.1.1.1.2.2	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L2	1 (0.21%)	0	0	0	0	1	0	0	0
29.2.1.2.2.99	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.unknown	1 (0.21%)	0	1	0	0	0	0	0	0
29.3.1	protein.targeting.nucleus	1 (0.21%)	0	0	0	1	0	0	0	0
29.3.3	protein.targeting.chloroplast	1 (0.21%)	0	0	0	0	1	0	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.21%)	0	0	0	0	1	0	0	0
29.5.11.4.5.2	protein.degradation.ubiquitin.E3.BTB/POZ Cullin3.BTB/POZ	1 (0.21%)	0	0	0	1	0	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.21%)	1	0	0	0	0	0	0	0
29.6	protein.folding	1 (0.21%)	0	0	0	0	0	0	1	0
30.10	signalling.phosphorelay	1 (0.21%)	0	0	1	0	0	0	0	0
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	1 (0.21%)	0	0	0	0	0	1	0	0
30.8	signalling.misc	1 (0.21%)	0	0	0	0	1	0	0	0
31.4	cell.vesicle transport	1 (0.21%)	0	1	0	0	0	0	0	0
31.5	cell.cell death	1 (0.21%)	0	0	0	1	0	0	0	0
31.5.1	cell.cell death.plants	1 (0.21%)	0	0	0	1	0	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.21%)	0	0	0	1	0	0	0	0
34.2	transport.sugars	1 (0.21%)	0	0	0	0	1	0	0	0
34.5	transport.ammonium	1 (0.21%)	0	0	0	0	0	0	0	1
34.8	transport.metabolite transporters at the envelope membrane	1 (0.21%)	0	0	0	0	0	0	0	1
34.9	transport.metabolite transporters at the mitochondrial membrane	1 (0.21%)	0	0	1	0	0	0	0	0