PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_11
Name: TRFL5
Description: N/A

#Associated genes: 472
#Associated MapMan terms: 136

Show species without binding site experiments

Click table-header(s) to enable sorting

MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	98 (20.76%)	4	5	10	28	26	8	9	8
27.3	RNA.regulation of transcription	62 (13.14%)	2	5	7	19	16	4	5	4
29	protein	47 (9.96%)	2	2	0	16	8	6	7	6
27.1	RNA.processing	25 (5.30%)	1	0	1	7	8	2	3	3
29.5	protein.degradation	22 (4.66%)	1	0	0	8	3	3	2	5
27.1.1	RNA.processing.splicing	16 (3.39%)	1	0	0	6	4	2	2	1
33	development	16 (3.39%)	1	2	2	5	1	2	2	1
33.99	development.unspecified	15 (3.18%)	1	1	2	5	1	2	2	1
20	stress	13 (2.75%)	1	0	2	3	4	0	2	1
29.5.11	protein.degradation.ubiquitin	13 (2.75%)	1	0	0	6	1	1	2	2
31	cell	12 (2.54%)	2	0	0	2	6	1	0	1
28	DNA	11 (2.33%)	0	0	2	1	3	1	3	1
16	secondary metabolism	10 (2.12%)	0	0	0	1	2	6	1	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	10 (2.12%)	1	2	1	3	1	1	1	0
28.1	DNA.synthesis/chromatin structure	10 (2.12%)	0	0	2	1	2	1	3	1
29.4	protein.postranslational modification	10 (2.12%)	0	0	0	7	0	1	1	1
16.1	secondary metabolism.isoprenoids	9 (1.91%)	0	0	0	0	2	6	1	0
20.2	stress.abiotic	9 (1.91%)	1	0	1	2	3	0	2	0
26	misc	9 (1.91%)	0	0	2	2	2	1	2	0
29.6	protein.folding	8 (1.69%)	1	2	0	0	2	1	2	0
30	signalling	8 (1.69%)	0	2	1	0	3	1	0	1
16.1.5	secondary metabolism.isoprenoids.terpenoids	7 (1.48%)	0	0	0	0	1	6	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	7 (1.48%)	0	0	0	5	2	0	0	0
27.4	RNA.RNA binding	7 (1.48%)	1	0	1	0	2	2	0	1
31.1	cell.organisation	7 (1.48%)	1	0	0	2	3	1	0	0
34	transport	7 (1.48%)	0	1	0	0	3	1	2	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	6 (1.27%)	0	0	0	5	1	0	0	0
29.2.1.2.2.34	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34	6 (1.27%)	0	2	0	0	0	1	2	1
20.2.1	stress.abiotic.heat	5 (1.06%)	1	0	0	0	3	0	1	0
27.1.2	RNA.processing.RNA helicase	5 (1.06%)	0	0	1	1	2	0	0	1
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	5 (1.06%)	0	2	0	1	2	0	0	0
27.3.99	RNA.regulation of transcription.unclassified	5 (1.06%)	0	0	1	2	1	0	1	0
20.1	stress.biotic	4 (0.85%)	0	0	1	1	1	0	0	1
27.2	RNA.transcription	4 (0.85%)	0	0	1	2	0	0	1	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	4 (0.85%)	0	0	1	2	0	1	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	4 (0.85%)	0	0	0	0	3	1	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	4 (0.85%)	0	0	1	0	1	0	1	1
29.3	protein.targeting	4 (0.85%)	0	0	0	1	0	1	2	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	4 (0.85%)	0	0	0	2	1	1	0	0
8	TCA / org transformation	3 (0.64%)	0	0	0	2	1	0	0	0
9	mitochondrial electron transport / ATP synthesis	3 (0.64%)	0	0	0	0	0	0	2	1
20.2.2	stress.abiotic.cold	3 (0.64%)	0	0	1	1	0	0	1	0
23	nucleotide metabolism	3 (0.64%)	0	0	1	0	0	2	0	0
26.13	misc.acid and other phosphatases	3 (0.64%)	0	0	0	1	0	1	1	0
27.3.55	RNA.regulation of transcription.HDA	3 (0.64%)	0	0	1	1	0	0	1	0
27.3.57	RNA.regulation of transcription.JUMONJI family	3 (0.64%)	0	0	0	0	0	0	2	1
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	3 (0.64%)	0	0	1	0	1	1	0	0
29.2.1.2.1.27	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S27	3 (0.64%)	0	0	0	0	2	0	0	1
29.2.1.2.2.19	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L19	3 (0.64%)	0	0	1	1	0	0	1	0
29.3.4	protein.targeting.secretory pathway	3 (0.64%)	0	0	0	1	0	1	1	0
29.3.4.1	protein.targeting.secretory pathway.ER	3 (0.64%)	0	0	0	1	0	1	1	0
29.5.11.20	protein.degradation.ubiquitin.proteasom	3 (0.64%)	0	0	0	2	0	0	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	3 (0.64%)	0	0	0	0	2	1	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	3 (0.64%)	0	1	0	1	0	1	0	0
29.5.3	protein.degradation.cysteine protease	3 (0.64%)	0	0	0	0	1	1	0	1
29.5.5	protein.degradation.serine protease	3 (0.64%)	0	0	0	1	0	1	0	1
8.1	TCA / org transformation.TCA	3 (0.64%)	0	0	0	2	1	0	0	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	3 (0.64%)	0	0	0	0	0	0	2	1
30.2	signalling.receptor kinases	3 (0.64%)	0	1	0	0	1	0	0	1
31.2	cell.division	3 (0.64%)	1	0	0	0	2	0	0	0
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	3 (0.64%)	0	0	0	0	0	0	2	1
1	PS	2 (0.42%)	0	0	0	0	0	0	2	0
1.1	PS.lightreaction	2 (0.42%)	0	0	0	0	0	0	2	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	2 (0.42%)	0	0	0	0	0	0	2	0
16.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway	2 (0.42%)	0	0	0	0	1	0	1	0
16.1.1.10	secondary metabolism.isoprenoids.non-mevalonate pathway.geranylgeranyl pyrophosphate synthase	2 (0.42%)	0	0	0	0	1	0	1	0
16.1.2	secondary metabolism.isoprenoids.mevalonate pathway	2 (0.42%)	0	0	0	0	2	0	0	0
16.1.2.8	secondary metabolism.isoprenoids.mevalonate pathway.geranyl diphosphate synthase	2 (0.42%)	0	0	0	0	2	0	0	0
23.5	nucleotide metabolism.deoxynucleotide metabolism	2 (0.42%)	0	0	1	0	0	1	0	0
23.5.3	nucleotide metabolism.deoxynucleotide metabolism.cytosine deaminase	2 (0.42%)	0	0	1	0	0	1	0	0
26.17	misc.dynamin	2 (0.42%)	0	0	0	0	1	0	1	0
26.21	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	2 (0.42%)	0	0	2	0	0	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	2 (0.42%)	0	0	0	0	2	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	2 (0.42%)	0	1	0	0	0	0	0	1
27.3.52	RNA.regulation of transcription.Global transcription factor group	2 (0.42%)	0	0	0	2	0	0	0	0
29.2.1.2.1.15	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S15	2 (0.42%)	0	0	0	1	1	0	0	0
29.2.1.2.2.80	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P0	2 (0.42%)	0	0	0	1	0	0	0	1
29.4.1	protein.postranslational modification.kinase	2 (0.42%)	0	0	0	1	0	0	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	2 (0.42%)	0	0	0	1	0	0	0	1
29.5.9	protein.degradation.AAA type	2 (0.42%)	0	0	0	1	0	0	0	1
29.7	protein.glycosylation	2 (0.42%)	0	0	0	0	2	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	2 (0.42%)	0	0	0	0	1	0	0	1
30.5	signalling.G-proteins	2 (0.42%)	0	1	0	0	1	0	0	0
34.1	transport.p- and v-ATPases	2 (0.42%)	0	0	0	0	1	1	0	0
34.16	transport.ABC transporters and multidrug resistance systems	2 (0.42%)	0	1	0	0	0	0	1	0
8.1.7	TCA / org transformation.TCA.succinate dehydrogenase	2 (0.42%)	0	0	0	2	0	0	0	0
10	cell wall	1 (0.21%)	0	0	0	1	0	0	0	0
10.8	cell wall.pectin*esterases	1 (0.21%)	0	0	0	1	0	0	0	0
10.8.1	cell wall.pectin*esterases.PME	1 (0.21%)	0	0	0	1	0	0	0	0
13	amino acid metabolism	1 (0.21%)	0	0	0	1	0	0	0	0
13.2	amino acid metabolism.degradation	1 (0.21%)	0	0	0	1	0	0	0	0
13.2.4	amino acid metabolism.degradation.branched chain group	1 (0.21%)	0	0	0	1	0	0	0	0
13.2.4.4	amino acid metabolism.degradation.branched chain group.leucine	1 (0.21%)	0	0	0	1	0	0	0	0
14	S-assimilation	1 (0.21%)	0	0	0	0	0	0	0	1
14.15	S-assimilation.AKN	1 (0.21%)	0	0	0	0	0	0	0	1
16.4	secondary metabolism.N misc	1 (0.21%)	0	0	0	1	0	0	0	0
16.4.2	secondary metabolism.N misc.betaine	1 (0.21%)	0	0	0	1	0	0	0	0
16.4.2.1	secondary metabolism.N misc.betaine.betaine-aldehyde dehydrogenase	1 (0.21%)	0	0	0	1	0	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.21%)	0	0	0	0	1	0	0	0
23.3	nucleotide metabolism.salvage	1 (0.21%)	0	0	0	0	0	1	0	0
23.3.2	nucleotide metabolism.salvage.nucleoside kinases	1 (0.21%)	0	0	0	0	0	1	0	0
23.3.2.2	nucleotide metabolism.salvage.nucleoside kinases.uridine kinase	1 (0.21%)	0	0	0	0	0	1	0	0
26.10	misc.cytochrome P450	1 (0.21%)	0	0	0	1	0	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.21%)	0	0	0	0	1	0	0	0
27.3.10	RNA.regulation of transcription.C2C2(Zn) YABBY family	1 (0.21%)	0	0	0	0	1	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.21%)	0	0	0	0	0	0	0	1
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	1 (0.21%)	0	0	0	0	1	0	0	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	1 (0.21%)	0	0	1	0	0	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.21%)	0	0	0	0	0	0	0	1
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.21%)	0	0	0	0	1	0	0	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.21%)	0	0	1	0	0	0	0	0
27.3.68	RNA.regulation of transcription.PWWP domain protein	1 (0.21%)	1	0	0	0	0	0	0	0
28.1.1	DNA.synthesis/chromatin structure.retrotransposon/transposase	1 (0.21%)	0	0	0	1	0	0	0	0
28.1.1.4	DNA.synthesis/chromatin structure.retrotransposon/transposase.hat-like transposase	1 (0.21%)	0	0	0	1	0	0	0	0
28.2	DNA.repair	1 (0.21%)	0	0	0	0	1	0	0	0
29.2	protein.synthesis	1 (0.21%)	0	0	0	0	1	0	0	0
29.2.1.2.1.25	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S25	1 (0.21%)	0	0	0	0	1	0	0	0
29.2.1.2.2.3	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L3	1 (0.21%)	0	1	0	0	0	0	0	0
29.2.1.2.2.31	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L31	1 (0.21%)	0	0	0	0	1	0	0	0
29.2.1.2.2.510	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10A	1 (0.21%)	0	0	0	1	0	0	0	0
29.2.5	protein.synthesis.release	1 (0.21%)	0	0	0	0	1	0	0	0
29.3.2	protein.targeting.mitochondria	1 (0.21%)	0	0	0	0	0	0	1	0
29.5.11.1	protein.degradation.ubiquitin.ubiquitin	1 (0.21%)	0	0	0	1	0	0	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.21%)	1	0	0	0	0	0	0	0
30.1	signalling.in sugar and nutrient physiology	1 (0.21%)	0	0	0	0	0	1	0	0
30.10	signalling.phosphorelay	1 (0.21%)	0	0	0	0	1	0	0	0
30.11	signalling.light	1 (0.21%)	0	0	1	0	0	0	0	0
30.2.24	signalling.receptor kinases.S-locus glycoprotein like	1 (0.21%)	0	1	0	0	0	0	0	0
31.3	cell.cycle	1 (0.21%)	0	0	0	0	0	0	0	1
31.4	cell.vesicle transport	1 (0.21%)	0	0	0	0	1	0	0	0
33.30	development.multitarget	1 (0.21%)	0	1	0	0	0	0	0	0
33.30.1	development.multitarget.target of rapamycin	1 (0.21%)	0	1	0	0	0	0	0	0
34.15	transport.potassium	1 (0.21%)	0	0	0	0	1	0	0	0
34.3	transport.amino acids	1 (0.21%)	0	0	0	0	1	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	1 (0.21%)	0	0	0	0	0	0	1	0
8.1.3	TCA / org transformation.TCA.aconitase	1 (0.21%)	0	0	0	0	1	0	0	0