PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_637
Name: SARD1; CBP60g
Description: Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors

Sequence: GAAATTTGG
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_214	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	77.78%
Motif_18	5659BOXLELAT5659	56/59 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)56 and LAT59 promoters; Found in -103 to -94 in LAT56 and in -114 to -105 in LAT59; Involved in modulating the activity of the LAT gene promoters in pollen	72.22%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	66.67%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	66.67%
Motif_673	Bellringer/replumless/pennywise BS2 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	66.67%
Motif_347	OPAQUE2ZMB32	opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)	62.60%
Motif_656	AG BS in SUP	Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS	55.56%
Motif_91	SORLIP4AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.56%
Motif_542	ABI5; AtMYC2; HY5	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	55.56%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	55.56%
Motif_608	OBP-1-4-5 BS in GST6	OBP1, 4, and 5 (OBF binding protein) binding site found in the Arabidopsis GST6 gene promoter; Located between -398 and -388; OBP1 is able to stimulate the binding of OBF proteins to the GST6 promoter;Overexpression of OBP3 lead to severe growth defect with altered root development and yellowish leaves; All OBP proteins contain transcriptional activation domains in their C-term. region; Dof protein play important roles in plant growth and development;The promoter of a H202-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding RT	55.56%
Motif_190	WUSATAg	Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis	55.56%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	55.56%
Motif_536	TBOXATGAPB	Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	55.56%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	55.18%
Matrix_67	GLK1	Not Available	54.99%
Matrix_327	ARR11	Not Available	54.49%
Matrix_471	KAN4	Not Available	53.69%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	53.14%
Motif_503	EECCRCAH1	EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1	53.06%
Motif_115	HSEs binding site motif	Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need?	53.06%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	53.06%
Matrix_435	ATHB51	Not Available	52.42%
Matrix_366	ARR14	Not Available	52.41%
Matrix_505	GATA8	Not Available	52.17%
Matrix_347	WOX14; WOX10	Not Available	51.95%
Matrix_178	HSFB2A	Not Available	51.95%
Matrix_21	HSFC1	Not Available	51.17%
Matrix_429	KAN4	Not Available	50.67%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	50.21%
Matrix_255	cdf3	Not Available	50.18%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.00%
Motif_207	MAMMALENHAN	Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene	50.00%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	50.00%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	50.00%