Matrix_390 | GT-1 | Not Available | | 74.85% |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | | 66.67% |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | | 66.67% |
Motif_126 | 5256BOXLELAT5256 | 52/56 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)52 and LAT56 promoters; Encompassing PB core motif (TGTGGTT), and is closely related to the box II sequence motif in the pea rbcS-3A gene promoter; Involved in modulating the activity of the LAT gene promoters in pollen; Dispensable for the developmental regulation of the LAT52 gene in pollen; 52/56 box may be a target for the binding of a member of the GT-1 transcription factor family | | 66.67% |
Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | | 66.67% |
Motif_284 | GT-2 | DNA binding factor GT-2 from Arabidopsis | | 66.67% |
Motif_123 | GT-1 | Molecular dissection of GT-1 from Arabidopsis | | 66.67% |
Matrix_245 | WRKY62; WRKY38 | Not Available | | 63.79% |
Matrix_235 | WRKY67; WRKY64; WRKY63; WRKY66 | Not Available | | 60.99% |
Matrix_289 | WRKY25 | Not Available | | 59.02% |
Matrix_325 | WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2 | Not Available | | 58.08% |
Matrix_368 | ATWRKY56; WRKY45; WRKY75; WRKY24 | Not Available | | 57.86% |
Motif_207 | MAMMALENHAN | Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene | | 57.04% |
Motif_285 | HDZIP2ATATHB2 | Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene | | 57.04% |
Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 56.11% |
Motif_489 | SORLREP3AT | one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 55.56% |
Motif_500 | D1GMAUX28 | D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner | | 55.56% |
Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | | 55.56% |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | | 55.56% |
Motif_562 | -300CORE | TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors | | 55.56% |
Motif_210 | REBETALGLHCB21 | REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation | | 55.56% |
Motif_442 | GT2OSPHYA | GT-2 (a rice nuclear protein) binding site in a rice phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements;The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter | | 55.56% |
Motif_604 | EMHVCHORD | Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter | | 55.56% |
Motif_122 | TGTCACACMCUCUMISIN | TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene | | 55.56% |
Motif_253 | S1FSORPL21 | S1F binding site (S1 site) in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activity | | 55.56% |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 55.56% |
Motif_475 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 55.56% |
Motif_485 | NRRBNEXTA | NRR (negative regulatory region) in promoter region of Brassica napus extA extensin gene; Removal of this region leads to expression in all tissues within the stem internode, petiole and root | | 55.56% |
Motif_260 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 55.56% |
Motif_508 | CEREGLUBOX1PSLEGA | cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element) | | 55.56% |
Motif_324 | MYBST1 | Core motif of MybSt1 (a potato MYB homolog) binding site; MybSt1 cDNA clone was isolated by using CaMV 35S promoter domain A as a probe; The Myb motif of the MybSt1 protein is distinct from the plant Myb DNA binding domain described so far | | 55.56% |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | | 55.56% |
Motif_624 | ATHB6 binding site motif | Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis | | 55.56% |
Motif_27 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 55.56% |
Motif_323 | MYB1LEPR | Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG)) | | 55.56% |
Matrix_197 | NAP | Not Available | | 55.28% |
Matrix_276 | AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660 | Not Available | | 54.26% |
Matrix_415 | WRKY27 | Not Available | | 52.81% |
Matrix_470 | WRKY18 | Not Available | | 52.36% |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | | 52.12% |
Matrix_240 | AT4G29000 | Not Available | | 51.58% |
Matrix_220 | WRKY18 | Not Available | | 51.34% |
Matrix_175 | Dof5.7 | Not Available | | 51.33% |
Matrix_170 | AT5G47660 | Not Available | | 51.24% |
Matrix_504 | WRKY40 | Not Available | | 51.03% |
Matrix_238 | WRKY59; WRKY23; WRKY68 | Not Available | | 50.82% |
Matrix_54 | AHL20 | Not Available | | 50.41% |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | | 50.00% |
Motif_165 | AP3SV40 | AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2 | | 50.00% |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | | 50.00% |