PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_47
Name: CARGNCAT
Description: Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo

Sequence: CCWWWWWWWWGG
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	83.33%
Motif_198	CARGATCONSENSUS	CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)	83.33%
Motif_572	AGL15 BS in AtGA2ox6	The Embryo MADS Domain Protein AGAMOUS-LIKE15 Directly Regulates Expression of a Gene Encoding an Enzyme Involved in Gibberellin Metabolism	66.67%
Matrix_212	ATHB-12	Not Available	61.24%
Matrix_136	SEP3	Not Available	60.79%
Matrix_125	AHL12	Not Available	60.51%
Motif_656	AG BS in SUP	Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS	58.33%
Matrix_168	AHL25	Not Available	57.97%
Matrix_354	AHL12	Not Available	57.61%
Matrix_521	AHL20	Not Available	57.41%
Motif_455	AG binding site motif	Nucleotide sequences recognized by the AGAMOUS MADS domain of Arabidopsis thaliana in vitro	57.04%
Matrix_185	AHL25	Not Available	56.35%
Matrix_88	AHL12	Not Available	56.18%
Motif_547	AG BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	54.17%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	54.17%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	54.17%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	54.17%
Matrix_444	AT1G19485; AT4G17950	Not Available	53.99%
Matrix_32	AHL25	Not Available	53.61%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	53.47%
Matrix_308	INO	Not Available	52.88%
Matrix_213	ATHB22	Not Available	52.67%
Matrix_495	HD-GL2-1; ANL2	Not Available	52.45%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	52.14%
Matrix_259	AT1G50680; AT1G51120	Not Available	51.89%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	51.74%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	51.72%
Matrix_54	AHL20	Not Available	51.70%
Matrix_341	HMGA	Not Available	51.68%
Matrix_204	WOX13	Not Available	51.48%
Motif_480	ABRE2HVA1	ABA responsive element, ABRE2, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	51.42%
Matrix_46	AT4G21895	Not Available	50.98%
Matrix_461	ATHB12	Not Available	50.68%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.00%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	50.00%