PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_449
Name: AGL25; SVP
Description: FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis

Sequence: CCAAAAATAGAAA
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_44	AGL25	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis	92.31%
Motif_45	AGL25; SOC1	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	92.31%
Matrix_132	SOC1	Not Available	69.53%
Matrix_149	PI	Not Available	66.99%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	62.57%
Matrix_136	SEP3	Not Available	61.93%
Motif_588	TL1ATSAR	TL1, a consensus sequence overrepresented in the promoter regions of all 13 NPR1-responsive ER-resident genes surveyed; NPR1 is Nonexpressor of pathogenesis-related genes 1, also known as NIM1	61.54%
Motif_387	AG BS in SPL/NOZ	The homeotic protein AGAMOUS controls microsporogenesis by regulation of SPOROCYTELESS	61.54%
Matrix_464	AGL15; AGL71	Not Available	61.32%
Matrix_18	AP3	Not Available	59.91%
Matrix_13	HAT5	Not Available	59.86%
Matrix_364	FLC	Not Available	56.01%
Matrix_407	AP1	Not Available	55.33%
Matrix_184	AGL15	Not Available	55.31%
Motif_476	XYLAT	cis-element identified among the promoters of the core xylem gene set	53.85%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	53.85%
Motif_496	JASE1ATOPR1	JASE1found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -179 and -170; Involved in up-regulation by both senescence and JA;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis	53.85%
Motif_537	CONSERVED11NTZMATP1	Conserved 11 nt sequence found in the maize mitochondrial atp1 promoter; Located between -5 and +6; Essential for the expression	53.85%
Motif_549	TBF1	The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition	53.85%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	53.85%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	53.85%
Motif_475	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	53.85%
Motif_240	IBOXLSCMCUCUMISIN	I-box-like sequence found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; I-box-like sequence functions as a negative regulatory element	53.85%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	53.85%
Motif_296	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	53.85%
Motif_551	BOX1PVCHS15	Box 1 of bean chs15 promoter; one of SBF-1 binding sites in chs15 promoter; Located at -318 to -305; Involved in organ-specific expression in plant development; Functions as a transcriptional silencer in electroporated protoplasts derived from undifferentiated suspension-cultured soybean cells; Resemble the binding site for the GT-1 factor in light-responsive elements	53.85%
Motif_294	HSRENTHSR203J	HSRE(HSR203 responsive element) in tobacco responsible for the marked induction of the HSR203J gene during the HR (hypersensitive response); HSR203J is specifically activated during the early steps of incompatible plant/pathogen interactions	53.85%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	53.85%
Motif_76	SURE1STPAT21	Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	53.85%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	53.85%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	53.85%
Motif_416	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	53.85%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	53.85%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	53.85%
Motif_679	SB1NPABC1	Sclareol box1 (SB1) found at -827 of a plasma membrane ATP binding cassette (ABC) transporter gene (NpABC1) in N. plumbaginifolia; Mutation in SB3 completely abolished sclareolide-mediated expression	53.85%
Motif_646	AACAOSGLUB1	AACA motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Highly conserved in the 5'-flanking region of glutelin genes	53.85%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	53.85%
Matrix_262	ATGRP2B; CSDP2	Not Available	53.44%
Matrix_353	HAT5	Not Available	53.38%
Matrix_25	AP3	Not Available	52.87%
Matrix_523	FUSCA3	Not Available	52.82%
Matrix_205	AGL15	Not Available	52.73%
Matrix_51	LFY	Not Available	52.55%
Matrix_412	GL1	Not Available	52.12%
Motif_143	VND6	Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation	52.12%
Matrix_72	CDF2	Not Available	51.81%
Matrix_124	AtHB23; ATHB13; ATHB20; ATHB5	Not Available	51.00%
Matrix_208	AP1	Not Available	50.36%
Matrix_501	DAG2	Not Available	50.22%
Motif_105	AGL3 binding site motif	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	50.00%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.00%