Motif_256 | RHE_element | Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns | | 90.91% |
Matrix_216 | TCP16 | Not Available | | 60.77% |
Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 60.76% |
Matrix_38 | SPL14 | Not Available | | 60.59% |
Motif_650 | SITEIIAOSPCNA | Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4 | | 60.57% |
Matrix_432 | AT1G77920 | Not Available | | 58.97% |
Matrix_196 | TCP20; AT5G41030 | Not Available | | 58.67% |
Matrix_475 | AT5G64220 | Not Available | | 58.43% |
Matrix_128 | TGA2 | Not Available | | 58.06% |
Motif_379 | ABRECE1HVA22 | CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1 | | 57.24% |
Motif_619 | SITEIIBOSPCNA | Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes | | 57.24% |
Motif_100 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 57.24% |
Motif_405 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 57.24% |
Matrix_142 | ZFP8 | Not Available | | 57.17% |
Matrix_399 | TGA1 | Not Available | | 57.15% |
Matrix_99 | DOF4.7 | Not Available | | 56.99% |
Matrix_311 | TGA1 | Not Available | | 56.46% |
Matrix_232 | TCP23 | Not Available | | 56.43% |
Motif_467 | VOZ binding site | Not Available | | 56.07% |
Motif_99 | DREB1A; DREB1C; DREB1B | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit | | 56.03% |
Matrix_297 | TCP15 | Not Available | | 55.91% |
Motif_425 | ANAC013; ANAC016; ANAC017; ANAC053; ANAC078 | A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation involved in oxidative stress responses in Arabidopsis thaliana | | 55.88% |
Matrix_507 | TCP3 | Not Available | | 55.60% |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 55.43% |
Matrix_12 | EIN3; EIL2 | Not Available | | 55.30% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 55.22% |
Matrix_52 | ZAT18 | Not Available | | 55.14% |
Matrix_3 | WRKY48 | Not Available | | 54.55% |
Motif_122 | TGTCACACMCUCUMISIN | TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene | | 54.55% |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | | 54.55% |
Matrix_439 | AP3 | Not Available | | 54.52% |
Matrix_419 | TGA9; PAN; TGA6; bZIP65 | Not Available | | 54.46% |
Matrix_17 | WRKY22 | Not Available | | 54.18% |
Matrix_75 | WRKY29 | Not Available | | 53.96% |
Matrix_380 | ATMYR1 | Not Available | | 53.81% |
Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 53.78% |
Matrix_416 | ASL5 | Not Available | | 53.66% |
Matrix_271 | AT3G16350 | Not Available | | 53.44% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 53.37% |
Matrix_410 | TOE2 | Not Available | | 53.30% |
Matrix_78 | AT3G45610 | Not Available | | 53.28% |
Matrix_102 | WRKY21 | Not Available | | 52.93% |
Matrix_177 | ADOF2 | Not Available | | 52.93% |
Matrix_370 | WRKY50; WRKY51 | Not Available | | 52.90% |
Matrix_166 | TGA4 | Not Available | | 52.75% |
Motif_135 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 52.70% |
Motif_59 | CEREGLUBOX3PSLEGA | cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements | | 52.70% |
Motif_362 | TGA2 octamer | palindromic octamer found enriched in chip-chip regions for TGA2 | | 52.70% |
Motif_386 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 52.70% |
Motif_456 | FUS3; ABI3 | Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product | | 52.70% |
Motif_508 | CEREGLUBOX1PSLEGA | cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element) | | 52.70% |
Matrix_220 | WRKY18 | Not Available | | 52.66% |
Matrix_357 | WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72 | Not Available | | 52.65% |
Matrix_423 | AT3G04030 | Not Available | | 52.65% |
Matrix_352 | LEC2 | Not Available | | 52.56% |
Matrix_61 | ATCBF3 | Not Available | | 52.56% |
Motif_167 | SBP-box promoter motif | Molecular characterisation of the Arabidopsis SBP-box genes | | 52.50% |
Matrix_348 | AT5G51910 | Not Available | | 52.33% |
Matrix_333 | GATA3 | Not Available | | 52.30% |
Matrix_470 | WRKY18 | Not Available | | 52.29% |
Matrix_341 | HMGA | Not Available | | 52.29% |
Matrix_384 | ATWRKY17 | Not Available | | 52.26% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 52.24% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 52.14% |
Matrix_248 | ZFP5 | Not Available | | 52.08% |
Matrix_41 | anac058 | Not Available | | 52.08% |
Matrix_176 | MYB98 | Not Available | | 51.98% |
Matrix_301 | PIL5 | Not Available | | 51.88% |
Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 51.84% |
Matrix_151 | ASIL1 | Not Available | | 51.65% |
Matrix_411 | DOF5.6 | Not Available | | 51.49% |
Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 51.49% |
Motif_12 | CEREGLUBOX2PSLEGA | cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element) | | 51.48% |
Motif_264 | GCBP2ZMGAPC4 | Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285 | | 51.48% |
Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 51.48% |
Motif_132 | PIATGAPB | PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | | 51.48% |
Motif_604 | EMHVCHORD | Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter | | 51.48% |
Motif_293 | NONAMERATH4 | Nonamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | | 51.48% |
Motif_685 | PALINDROMICCBOXGM | Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence | | 51.48% |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | | 51.41% |
Matrix_197 | NAP | Not Available | | 51.33% |
Matrix_101 | ERF5 | Not Available | | 51.26% |
Matrix_287 | ERF2 | Not Available | | 51.25% |
Motif_26 | GRF7 | Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A | | 51.22% |
Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | | 51.22% |
Matrix_286 | GATA7 | Not Available | | 51.22% |
Matrix_6 | AT1G70000 | Not Available | | 51.19% |
Matrix_431 | ATHB21; HB-3 | Not Available | | 51.17% |
Matrix_418 | KNAT6; KNAT2 | Not Available | | 51.10% |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | | 50.66% |
Matrix_106 | AT5G47390 | Not Available | | 50.54% |
Matrix_14 | ZCW32; AT5G62610 | Not Available | | 50.54% |
Matrix_462 | ATERF-8 | Not Available | | 50.52% |
Matrix_402 | TOE1 | Not Available | | 50.48% |
Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 50.48% |
Matrix_406 | ATERF-7 | Not Available | | 50.26% |
Matrix_226 | GATA1 | Not Available | | 50.26% |
Matrix_230 | ARR11 | Not Available | | 50.15% |
Matrix_518 | AT2G21230 | Not Available | | 50.14% |
Matrix_427 | ZAT14 | Not Available | | 50.14% |
Matrix_148 | WRKY60 | Not Available | | 50.09% |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | | 50.00% |