PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_346
Name: SND1; VND6; VND7; NST1; NST2
Description: Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis

Sequence: WNNYBTNNNNNNNAMGNHW
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_3	ANAC059	ORS1, an H2O2-Responsive NAC Transcription Factor, Controls Senescence in Arabidopsis thaliana	65.16%
Motif_532	ANAC059	ORS1, an H2O2-Responsive NAC Transcription Factor, Controls Senescence in Arabidopsis thaliana	64.84%
Motif_303	VOZATVPP	VOZ-binding sequence found in the promoter of A. thaliana V-PPase (vacuolar H+-pyrophosphatase) gene; Involved in its expression during pollen development; one-zinc finger	64.38%
Motif_79	UPRMOTIFIIAT	Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc	64.13%
Motif_134	ANAC092	NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis	59.63%
Motif_689	ANAC092	NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis	59.51%
Matrix_105	SPL14	Not Available	59.36%
Matrix_358	AGL15	Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study	58.74%
Matrix_342	SPL14	Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance	58.51%
Motif_156	HBOXPVCHS15	Binding site of two bean protein factors, KAP-1 and KAP-2; KAP-1 is a 97 kDa polypeptide; KAP-2 comprises two polypeptides of 76 kDa and 56 kDa; Elicitation of bean cell with glutathione causes a rapid increase in specific activities of KAP-1 and KAP2	57.57%
Matrix_191	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	57.03%
Motif_504	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.98%
Motif_686	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.98%
Motif_527	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.98%
Motif_635	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.98%
Motif_289	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.98%
Motif_159	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.98%
Motif_425	ANAC013; ANAC016; ANAC017; ANAC053; ANAC078	A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation involved in oxidative stress responses in Arabidopsis thaliana	56.30%
Matrix_417	SEP4	Not Available	56.10%
Matrix_310	AGL3	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	56.10%
Matrix_2	SEP4	Not Available	56.10%
Matrix_121	SHP1	Not Available	55.89%
Matrix_386	AGL1	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	55.89%
Matrix_428	SEP4	Not Available	55.58%
Matrix_30	AtSPL8	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	55.56%
Matrix_468	ATHB9	The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteins	55.55%
Matrix_381	ATHB9	Not Available	55.55%
Matrix_459	ATHB9; CNA; PHB; ATHB-8; REV	Not Available	55.55%
Matrix_375	AtSPL8	Not Available	55.38%
Matrix_466	PRR5	Not Available	55.34%
Motif_411	PRECONSCRHSP70A	Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light	55.08%
Matrix_43	AG	Not Available	54.92%
Matrix_98	AG	Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS	54.92%
Matrix_445	AG	Not Available	54.92%
Matrix_28	SEP1	Not Available	54.89%
Matrix_222	AGL2	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	54.89%
Matrix_189	WRI1	An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis	54.82%
Matrix_485	SVP; AGL24	Not Available	54.23%
Matrix_250	ADAP; AT1G79700; WRI1; ANT	Not Available	54.06%
Matrix_267	FLM; FLC; MAF2; FCL3; AGL69; AGL68	Not Available	54.04%
Matrix_107	AtSPL3	Not Available	53.99%
Matrix_356	PRR5	Not Available	53.81%
Matrix_304	AtSPL3	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	53.62%
Motif_110	AGATCONSENSUS	Binding consensus sequence for the product of the Arabidopsis floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development	53.38%
Matrix_414	AGL15	Not Available	53.10%
Motif_691	HBOXCONSENSUSPVCHS	H-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigen	52.85%
Matrix_464	AGL15; AGL71	Not Available	52.41%
Matrix_15	PIF3_1	Direct targeting of light signals to a promoter element-bound transcription factor	52.25%
Matrix_24	POC1	Not Available	52.25%
Matrix_18	AP3	Not Available	52.21%
Matrix_301	PIL5	Not Available	52.07%
Matrix_338	AP2	Not Available	51.66%
Motif_280	OCSELEMENTAT	OCS element in octopine synthase gene (OCS) of Ti-plasmid of Agrobacterium; Binding with nuclear protein isolated from tobacco; See OCS motif; ocs-like element; Also found in Arabidopsis glutathione S-transferase gene (GST6); OBF (ocs element binding factor)-binding site; See S000346; Tandem OCSTF binding-sites are essential for the activity of the Ocs-element; The Ocs-element occures rarely in plant gene promoters	51.60%
Matrix_95	LFY	Not Available	51.13%
Matrix_118	PIF3_2	Direct targeting of light signals to a promoter element-bound transcription factor	51.05%
Matrix_345	POC1	Not Available	51.05%
Matrix_251	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	50.93%
Matrix_49	FHY3/FAR1	Not Available	50.73%
Motif_180	AGL2 binding site motif	Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer	50.60%
Matrix_488	ABF1	Not Available	50.60%
Motif_327	AGAMOUSATCONSENSUS	Binding consensus sequence of Arabidopsis AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338	50.50%
Matrix_305	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	50.49%
Motif_360	OCS promoter motif	The ocs-element is a component of the promoters of several T-DNA and plant viral genes	50.24%
Motif_30	HSELIKENTACIDICPR1	HSE-like motif in -56 region of acidic PR1 gene of tobacco; not found in basic PR1 gene	50.21%