PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_256
Name: RHE_element
Description: Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns

Sequence: TGNNKCACGW
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_395	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	90.00%
Motif_650	SITEIIAOSPCNA	Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4	64.09%
Matrix_38	SPL14	Not Available	61.35%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	60.73%
Matrix_196	TCP20; AT5G41030	Not Available	60.53%
Motif_379	ABRECE1HVA22	CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1	60.43%
Motif_139	RHERPATEXPA7	Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns	60.00%
Motif_122	TGTCACACMCUCUMISIN	TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene	60.00%
Matrix_475	AT5G64220	Not Available	58.84%
Matrix_99	DOF4.7	Not Available	56.70%
Matrix_142	ZFP8	Not Available	56.66%
Motif_26	GRF7	Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A	56.34%
Motif_189	CMSRE1IBSPOA	CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene	56.34%
Matrix_12	EIN3; EIL2	Not Available	56.33%
Matrix_52	ZAT18	Not Available	55.82%
Motif_467	VOZ binding site	Not Available	55.56%
Matrix_216	TCP16	Not Available	55.55%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	55.36%
Motif_576	TGACGTVMAMY	TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds	55.00%
Matrix_177	ADOF2	Not Available	54.27%
Motif_552	MRE1	MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1	54.22%
Motif_604	EMHVCHORD	Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter	54.09%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	54.09%
Motif_59	CEREGLUBOX3PSLEGA	cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements	54.09%
Motif_508	CEREGLUBOX1PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	54.09%
Motif_12	CEREGLUBOX2PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	54.09%
Matrix_17	WRKY22	Not Available	53.94%
Motif_443	KN1; BP	The knotted1-like homeobox gene BREVIPEDICELLUS regulates cell differentiation by modulating metabolic pathways. Selective interaction of plant homeodomain proteins mediates high DNA-binding affinity	53.88%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	53.88%
Matrix_3	WRKY48	Not Available	53.82%
Matrix_78	AT3G45610	Not Available	53.64%
Matrix_75	WRKY29	Not Available	53.47%
Matrix_411	DOF5.6	Not Available	53.35%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	53.34%
Matrix_482	AT2G25650; AT4G00270	Not Available	53.21%
Motif_16	-300ELEMENT	Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF	53.19%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	53.18%
Matrix_380	ATMYR1	Not Available	53.08%
Motif_405	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	52.75%
Motif_52	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	52.75%
Motif_80	AP1SV40	AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	52.75%
Motif_351	GARE1OSREP1	Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice	52.75%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	52.75%
Motif_199	GCN4OSGLUB1	GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression	52.75%
Motif_100	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	52.75%
Matrix_102	WRKY21	Not Available	52.50%
Matrix_333	GATA3	Not Available	52.46%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	52.35%
Matrix_470	WRKY18	Not Available	52.33%
Matrix_423	AT3G04030	Not Available	52.28%
Matrix_384	ATWRKY17	Not Available	52.21%
Matrix_370	WRKY50; WRKY51	Not Available	52.06%
Matrix_294	MEE35	Not Available	51.94%
Matrix_220	WRKY18	Not Available	51.85%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	51.77%
Matrix_341	HMGA	Not Available	51.62%
Matrix_59	AT4G00238; AT4G00250	Not Available	51.53%
Matrix_61	ATCBF3	Not Available	51.49%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	51.47%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	51.43%
Matrix_248	ZFP5	Not Available	51.42%
Matrix_206	CUC1; ANAC100	Not Available	51.39%
Motif_653	INTRONLOWER	3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns	51.34%
Matrix_494	OBP4	Not Available	51.05%
Matrix_197	NAP	Not Available	51.00%
Matrix_418	KNAT6; KNAT2	Not Available	50.93%
Matrix_416	ASL5	Not Available	50.89%
Matrix_410	TOE2	Not Available	50.79%
Matrix_360	ORA59	Not Available	50.77%
Matrix_41	anac058	Not Available	50.72%
Matrix_287	ERF2	Not Available	50.66%
Matrix_101	ERF5	Not Available	50.66%
Matrix_427	ZAT14	Not Available	50.63%
Matrix_348	AT5G51910	Not Available	50.62%
Matrix_431	ATHB21; HB-3	Not Available	50.59%
Matrix_295	ERF1	Not Available	50.52%
Motif_663	E2F binding site motif; E2F/DP BS in AtCDC6	Not Available	50.43%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	50.43%
Motif_512	GLMHVCHORD	GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter	50.34%
Matrix_406	ATERF-7	Not Available	50.24%
Matrix_457	TGA2	Not Available	50.21%
Matrix_14	ZCW32; AT5G62610	Not Available	50.19%
Matrix_487	AT1G29160	Not Available	50.15%
Matrix_110	ATABI4; AT3G57600	Not Available	50.12%
Matrix_432	AT1G77920	Not Available	50.07%
Matrix_517	ERF12	Not Available	50.04%
Motif_586	ASF1MOTIFCAMV	ASF-1 binding site in CaMV 35S promoter; ASF-1 binds to two TGACG motifs; Found in HBP-1 binding site of wheat histone H3 gene; TGACG motifs are found in many promoters and are involved in transcriptional activation of several genes by auxin and/or salicylic acid; May be relevant to light regulation; Binding site of tobacco TGA1a; TGA1a and b show homology to CREB; TGA6 is a new member of the TGA family; Abiotic and biotic stress differentially stimulate as-1 element activity	50.00%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	50.00%