PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_198
Name: CARGATCONSENSUS
Description: CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)

Sequence: CCWWWWWWGG
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	82.68%
Motif_47	CARGNCAT	Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo	80.00%
Motif_656	AG BS in SUP	Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS	70.00%
Matrix_212	ATHB-12	Not Available	63.85%
Matrix_136	SEP3	Not Available	61.62%
Matrix_125	AHL12	Not Available	61.35%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	60.00%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	60.00%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	60.00%
Motif_455	AG binding site motif	Nucleotide sequences recognized by the AGAMOUS MADS domain of Arabidopsis thaliana in vitro	60.00%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	59.73%
Matrix_521	AHL20	Not Available	59.05%
Matrix_168	AHL25	Not Available	58.26%
Matrix_259	AT1G50680; AT1G51120	Not Available	57.41%
Matrix_185	AHL25	Not Available	57.32%
Matrix_308	INO	Not Available	56.56%
Matrix_88	AHL12	Not Available	56.23%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	55.97%
Matrix_46	AT4G21895	Not Available	55.85%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	55.76%
Matrix_99	DOF4.7	Not Available	55.67%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	55.41%
Matrix_341	HMGA	Not Available	55.19%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	55.00%
Matrix_435	ATHB51	Not Available	53.98%
Matrix_354	AHL12	Not Available	53.96%
Matrix_444	AT1G19485; AT4G17950	Not Available	53.79%
Matrix_286	GATA7	Not Available	53.63%
Matrix_32	AHL25	Not Available	53.49%
Matrix_461	ATHB12	Not Available	53.08%
Matrix_204	WOX13	Not Available	52.69%
Motif_367	FUS3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	52.68%
Motif_101	MYB61	AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network	52.68%
Motif_465	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	52.68%
Motif_384	SITEIOSPCNA	Site I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation	52.68%
Motif_473	ABREOSRGA1	ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia	52.68%
Motif_456	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	52.68%
Matrix_431	ATHB21; HB-3	Not Available	52.53%
Matrix_8	KAN1	Not Available	52.52%
Matrix_70	GATA26	Not Available	52.39%
Matrix_227	AT1G64620	Not Available	51.83%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	51.46%
Matrix_54	AHL20	Not Available	51.46%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	51.34%
Matrix_411	DOF5.6	Not Available	51.23%
Matrix_441	ATHB5	Not Available	51.19%
Matrix_142	ZFP8	Not Available	51.14%
Matrix_143	GATA14; GATA6; GATA5	Not Available	51.07%
Matrix_177	ADOF2	Not Available	51.00%
Matrix_17	WRKY22	Not Available	50.74%
Matrix_141	AT3G25990	Not Available	50.70%
Matrix_333	GATA3	Not Available	50.59%
Matrix_271	AT3G16350	Not Available	50.55%
Matrix_226	GATA1	Not Available	50.28%
Matrix_10	STY1	Not Available	50.28%
Matrix_328	AT1G76580	Not Available	50.21%
Matrix_97	APRR2	Not Available	50.20%
Matrix_182	ATHB6	Not Available	50.18%
Matrix_100	AT1G48610	Not Available	50.11%
Matrix_12	EIN3; EIL2	Not Available	50.11%
Matrix_206	CUC1; ANAC100	Not Available	50.05%
Motif_572	AGL15 BS in AtGA2ox6	The Embryo MADS Domain Protein AGAMOUS-LIKE15 Directly Regulates Expression of a Gene Encoding an Enzyme Involved in Gibberellin Metabolism	50.00%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	50.00%
Motif_637	SARD1; CBP60g	Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors	50.00%
Motif_547	AG BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	50.00%