PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_187
Name: AT1BOX
Description: AT-1 box (AT-rich element) found in the promoter region of the genes for tobacco chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element

Sequence: AATATTTTTATT
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_29	AP1	Not Available	80.10%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	66.67%
Motif_521	RBCSBOX3PS	rbcS box III; 5' upstream region (-114) of pea rbcS gene; binding with trans factor GT-1; one of GT-1 boxes	66.67%
Motif_547	AG BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	66.67%
Matrix_205	AGL15	Not Available	66.28%
Matrix_523	FUSCA3	Not Available	65.99%
Matrix_51	LFY	Not Available	64.26%
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	62.50%
Motif_55	MRNASTA1CRPSBD	mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located within the first 12 nucleotides of the leader region	58.33%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	58.33%
Motif_276	LREBOX3PSRBCS3	LRE (light-responsive element) Box III of pea rbcS-3A gene; GT-1 binding	58.33%
Motif_294	HSRENTHSR203J	HSRE(HSR203 responsive element) in tobacco responsible for the marked induction of the HSR203J gene during the HR (hypersensitive response); HSR203J is specifically activated during the early steps of incompatible plant/pathogen interactions	58.33%
Motif_38	RSEPVGRP1	RSE (root-specific element) of bean GRP1.8 gene; consensus sequence	58.33%
Motif_377	SURE2STPAT21	Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	58.33%
Motif_673	Bellringer/replumless/pennywise BS2 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	58.33%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	58.33%
Matrix_391	AHL20	Not Available	54.82%
Matrix_269	FHY3/FAR1	Not Available	53.07%
Matrix_88	AHL12	Not Available	52.05%
Matrix_240	AT4G29000	Not Available	51.85%
Matrix_318	ATHB16	Not Available	51.81%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	51.63%
Matrix_354	AHL12	Not Available	51.29%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	51.12%
Motif_631	MARARS	ARS element; Motif found in SAR (MAR)	51.12%
Matrix_185	AHL25	Not Available	50.99%
Matrix_383	CCA1	Not Available	50.52%
Matrix_435	ATHB51	Not Available	50.32%
Matrix_125	AHL12	Not Available	50.22%
Motif_295	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.00%
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	50.00%
Motif_253	S1FSORPL21	S1F binding site (S1 site) in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activity	50.00%
Motif_216	PYRIMIDINEBOXHVEPB1	Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction	50.00%
Motif_136	SEF4MOTIFGM7S	SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)	50.00%
Motif_126	5256BOXLELAT5256	52/56 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)52 and LAT56 promoters; Encompassing PB core motif (TGTGGTT), and is closely related to the box II sequence motif in the pea rbcS-3A gene promoter; Involved in modulating the activity of the LAT gene promoters in pollen; Dispensable for the developmental regulation of the LAT52 gene in pollen; 52/56 box may be a target for the binding of a member of the GT-1 transcription factor family	50.00%
Motif_66	ESPASGL01	ESP (endosperm specificity palindrome) element found in the promoter of oat (A.s.) globulin gene (AsGlo1)	50.00%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	50.00%
Motif_147	HDMOTIFPCPR2	HD (homeodomain) protein target site in parsley pathogenesis-related protein 2 (PR2); A potential in vivo target site	50.00%
Motif_229	D2GMAUX28	D2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -703 and -716; A/T-rich sequence	50.00%
Motif_166	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	50.00%
Motif_240	IBOXLSCMCUCUMISIN	I-box-like sequence found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; I-box-like sequence functions as a negative regulatory element	50.00%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.00%
Motif_601	D3GMAUX28	D3; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -750 and -760; A/T-rich sequence	50.00%
Motif_575	TATABOX3	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene	50.00%
Motif_62	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	50.00%
Motif_654	DR5GMGH3	DR5; A highly active synthetic auxin response element; Created by site-directed mutations in a natural composite AuxRE found in the soybean GH3 promoter; The DR5 showed greater auxin responsiveness; Binding site of ARF1	50.00%
Motif_656	AG BS in SUP	Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS	50.00%
Motif_668	TCA1MOTIF	TCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoter	50.00%
Motif_667	TATABOXOSPAL	Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter	50.00%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	50.00%
Motif_458	ELEMENT2GMLBC3	Element 2 found in the promoter of soybean leghaemoglobin lbc3 gene; Binding site of nuclear extract from soybean nodules; Located at -161 to -176; Element 1 and Element 2 bind to the same nodule specific factor; Element 2 is highly conserved in other soybean lb gene promoter regions	50.00%
Motif_364	DE1PSPRA2	DE1 found in the pea(P.S) pra2 gene promoter; Involved in pra2 down-regulation by phytochrome A, phytochrome B and blue-light photoreceptors; pra2 encodes a small GTPase belonging to the YPT/rab family; DF1 has DNA-binding domain specifically binds to two types of DNA sequences, DE1 and GT2	50.00%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	50.00%
Motif_376	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	50.00%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	50.00%
Motif_424	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	50.00%
Motif_422	SP8BFIBSP8BIB	One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	50.00%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	50.00%
Motif_608	OBP-1-4-5 BS in GST6	OBP1, 4, and 5 (OBF binding protein) binding site found in the Arabidopsis GST6 gene promoter; Located between -398 and -388; OBP1 is able to stimulate the binding of OBF proteins to the GST6 promoter;Overexpression of OBP3 lead to severe growth defect with altered root development and yellowish leaves; All OBP proteins contain transcriptional activation domains in their C-term. region; Dof protein play important roles in plant growth and development;The promoter of a H202-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding RT	50.00%
Motif_25	GLUTAACAOS	glutelin common motif; AACA motif; Conserved in all member of rice glutelin	50.00%
Motif_39	CYTOSITECSHPRA	13 bp sequence of unknown function found in cucumber hydroxypyruvate reductase (hprA) gene promoter; Protein binding site; Required for cytokinin responsiveness; See AS1LIKECSHPRA found in the same region; Also involved in light responsiveness	50.00%
Motif_49	TATAPVTRNALEU	TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)	50.00%